Iron in PDB 9h8t: Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
Enzymatic activity of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
All present enzymatic activity of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome:
7.1.1.8;
Other elements in 9h8t:
The structure of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
(pdb code 9h8t). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome, PDB code: 9h8t:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 1 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:39.4
occ:1.00
|
FE
|
D:HEC401
|
0.0
|
39.4
|
1.0
|
NE2
|
D:HIS125
|
2.0
|
18.1
|
1.0
|
NA
|
D:HEC401
|
2.1
|
21.5
|
1.0
|
NC
|
D:HEC401
|
2.1
|
23.0
|
1.0
|
NB
|
D:HEC401
|
2.1
|
23.6
|
1.0
|
ND
|
D:HEC401
|
2.1
|
23.8
|
1.0
|
CE1
|
D:HIS125
|
2.8
|
18.0
|
1.0
|
SD
|
D:MET244
|
2.8
|
25.7
|
1.0
|
HE1
|
D:HIS125
|
2.9
|
18.3
|
1.0
|
C1A
|
D:HEC401
|
3.1
|
21.0
|
1.0
|
C4D
|
D:HEC401
|
3.1
|
21.1
|
1.0
|
C4B
|
D:HEC401
|
3.1
|
22.1
|
1.0
|
C1C
|
D:HEC401
|
3.1
|
21.6
|
1.0
|
C4C
|
D:HEC401
|
3.1
|
18.8
|
1.0
|
C4A
|
D:HEC401
|
3.1
|
21.2
|
1.0
|
C1D
|
D:HEC401
|
3.1
|
21.8
|
1.0
|
C1B
|
D:HEC401
|
3.1
|
22.1
|
1.0
|
CD2
|
D:HIS125
|
3.1
|
19.9
|
1.0
|
CHA
|
D:HEC401
|
3.4
|
20.8
|
1.0
|
HD2
|
D:HIS125
|
3.4
|
21.7
|
1.0
|
CHD
|
D:HEC401
|
3.4
|
20.0
|
1.0
|
CHC
|
D:HEC401
|
3.4
|
21.2
|
1.0
|
CHB
|
D:HEC401
|
3.5
|
19.3
|
1.0
|
ND1
|
D:HIS125
|
4.0
|
19.1
|
1.0
|
HB2
|
D:MET244
|
4.0
|
28.4
|
1.0
|
HG3
|
D:MET244
|
4.0
|
28.2
|
1.0
|
HE1
|
D:MET244
|
4.0
|
26.6
|
1.0
|
CG
|
D:MET244
|
4.1
|
28.2
|
1.0
|
CE
|
D:MET244
|
4.1
|
26.5
|
1.0
|
HB3
|
D:PRO194
|
4.1
|
23.1
|
1.0
|
CG
|
D:HIS125
|
4.2
|
20.3
|
1.0
|
C2A
|
D:HEC401
|
4.3
|
21.1
|
1.0
|
C3A
|
D:HEC401
|
4.3
|
21.3
|
1.0
|
C2C
|
D:HEC401
|
4.3
|
23.5
|
1.0
|
C3B
|
D:HEC401
|
4.3
|
24.8
|
1.0
|
C2B
|
D:HEC401
|
4.3
|
25.7
|
1.0
|
C3C
|
D:HEC401
|
4.3
|
23.6
|
1.0
|
HE2
|
D:MET244
|
4.3
|
27.8
|
1.0
|
C3D
|
D:HEC401
|
4.3
|
24.1
|
1.0
|
C2D
|
D:HEC401
|
4.3
|
22.4
|
1.0
|
HHA
|
D:HEC401
|
4.4
|
23.1
|
1.0
|
HHD
|
D:HEC401
|
4.4
|
22.9
|
1.0
|
HHC
|
D:HEC401
|
4.4
|
23.7
|
1.0
|
HHB
|
D:HEC401
|
4.4
|
20.9
|
1.0
|
HB2
|
D:CYS124
|
4.5
|
26.7
|
1.0
|
CB
|
D:MET244
|
4.6
|
26.8
|
1.0
|
HD2
|
D:PRO195
|
4.7
|
21.3
|
1.0
|
HD1
|
D:HIS125
|
4.7
|
19.6
|
1.0
|
HD21
|
D:LEU197
|
4.8
|
18.0
|
1.0
|
HG2
|
D:MET244
|
4.9
|
28.8
|
1.0
|
HE3
|
D:MET244
|
4.9
|
27.9
|
1.0
|
HB3
|
D:MET244
|
4.9
|
29.4
|
1.0
|
|
Iron binding site 2 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 2 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe300
b:39.1
occ:1.00
|
FE1
|
A:FES300
|
0.0
|
39.1
|
1.0
|
S1
|
A:FES300
|
2.2
|
13.6
|
1.0
|
S2
|
A:FES300
|
2.2
|
12.5
|
1.0
|
SG
|
A:CYS236
|
2.3
|
19.1
|
1.0
|
SG
|
A:CYS217
|
2.3
|
21.6
|
1.0
|
FE2
|
A:FES300
|
2.7
|
37.9
|
1.0
|
HG
|
A:CYS217
|
3.1
|
17.9
|
1.0
|
HB3
|
A:HIS219
|
3.1
|
15.0
|
1.0
|
HG
|
A:CYS236
|
3.2
|
15.8
|
1.0
|
HB3
|
A:CYS217
|
3.3
|
16.7
|
1.0
|
CB
|
A:CYS217
|
3.3
|
15.7
|
1.0
|
HG
|
A:SER241
|
3.4
|
22.4
|
1.0
|
HB3
|
A:CYS236
|
3.4
|
20.5
|
1.0
|
HB2
|
A:CYS222
|
3.5
|
14.8
|
1.0
|
HB2
|
A:CYS217
|
3.5
|
16.2
|
1.0
|
CB
|
A:CYS236
|
3.5
|
21.1
|
1.0
|
HB2
|
A:CYS238
|
3.6
|
15.3
|
1.0
|
HB2
|
A:CYS236
|
3.8
|
19.0
|
1.0
|
H
|
A:LEU220
|
3.9
|
14.1
|
1.0
|
H
|
A:HIS239
|
3.9
|
15.9
|
1.0
|
H
|
A:CYS222
|
3.9
|
12.7
|
1.0
|
CB
|
A:HIS219
|
4.0
|
13.3
|
1.0
|
OG
|
A:SER241
|
4.2
|
22.8
|
1.0
|
H
|
A:HIS219
|
4.2
|
18.1
|
1.0
|
HB2
|
A:HIS219
|
4.2
|
13.7
|
1.0
|
ND1
|
A:HIS219
|
4.4
|
16.4
|
1.0
|
CB
|
A:CYS222
|
4.4
|
15.7
|
1.0
|
HB2
|
A:SER241
|
4.4
|
22.0
|
1.0
|
ND1
|
A:HIS239
|
4.4
|
15.8
|
1.0
|
H
|
A:GLY221
|
4.5
|
14.7
|
1.0
|
H
|
A:CYS238
|
4.5
|
16.2
|
1.0
|
CB
|
A:CYS238
|
4.5
|
12.6
|
1.0
|
H
|
A:SER241
|
4.6
|
22.3
|
1.0
|
N
|
A:HIS239
|
4.6
|
17.6
|
1.0
|
N
|
A:CYS222
|
4.7
|
11.9
|
1.0
|
HB2
|
A:HIS239
|
4.7
|
14.3
|
1.0
|
N
|
A:LEU220
|
4.7
|
13.0
|
1.0
|
CG
|
A:HIS219
|
4.7
|
14.9
|
1.0
|
HB3
|
A:CYS238
|
4.8
|
12.6
|
1.0
|
CA
|
A:CYS217
|
4.8
|
15.8
|
1.0
|
H
|
A:GLY240
|
4.8
|
18.5
|
1.0
|
CB
|
A:SER241
|
4.8
|
21.9
|
1.0
|
CA
|
A:CYS236
|
4.9
|
19.0
|
1.0
|
N
|
A:HIS219
|
4.9
|
18.1
|
1.0
|
HB3
|
A:CYS222
|
5.0
|
14.8
|
1.0
|
|
Iron binding site 3 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 3 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe300
b:37.9
occ:1.00
|
FE2
|
A:FES300
|
0.0
|
37.9
|
1.0
|
ND1
|
A:HIS239
|
2.1
|
15.8
|
1.0
|
ND1
|
A:HIS219
|
2.2
|
16.4
|
1.0
|
S1
|
A:FES300
|
2.2
|
13.6
|
1.0
|
S2
|
A:FES300
|
2.2
|
12.5
|
1.0
|
FE1
|
A:FES300
|
2.7
|
39.1
|
1.0
|
HB3
|
A:HIS219
|
2.8
|
15.0
|
1.0
|
HB2
|
A:HIS239
|
2.8
|
14.3
|
1.0
|
CG
|
A:HIS239
|
3.1
|
12.6
|
1.0
|
CE1
|
A:HIS239
|
3.1
|
10.9
|
1.0
|
CG
|
A:HIS219
|
3.1
|
14.9
|
1.0
|
CE1
|
A:HIS219
|
3.1
|
9.8
|
1.0
|
HE1
|
A:HIS239
|
3.3
|
11.9
|
1.0
|
HE1
|
A:HIS219
|
3.3
|
10.1
|
1.0
|
CB
|
A:HIS219
|
3.4
|
13.3
|
1.0
|
CB
|
A:HIS239
|
3.4
|
13.9
|
1.0
|
HB2
|
A:LEU220
|
3.5
|
11.8
|
1.0
|
H
|
A:HIS239
|
3.5
|
15.9
|
1.0
|
H
|
A:LEU220
|
3.6
|
14.1
|
1.0
|
HB2
|
A:CYS238
|
3.8
|
15.3
|
1.0
|
HB2
|
A:HIS219
|
3.9
|
13.7
|
1.0
|
N
|
A:HIS239
|
3.9
|
17.6
|
1.0
|
N
|
A:LEU220
|
4.1
|
13.0
|
1.0
|
HG2
|
A:PRO253
|
4.1
|
16.5
|
1.0
|
HB3
|
A:CYS238
|
4.1
|
12.6
|
1.0
|
HG
|
A:SER241
|
4.1
|
22.4
|
1.0
|
HB3
|
A:HIS239
|
4.2
|
13.2
|
1.0
|
CA
|
A:HIS239
|
4.2
|
14.9
|
1.0
|
NE2
|
A:HIS239
|
4.2
|
10.2
|
1.0
|
CD2
|
A:HIS239
|
4.2
|
9.9
|
1.0
|
NE2
|
A:HIS219
|
4.2
|
10.3
|
1.0
|
CD2
|
A:HIS219
|
4.3
|
13.2
|
1.0
|
HG
|
A:LEU220
|
4.3
|
12.1
|
1.0
|
CB
|
A:LEU220
|
4.4
|
10.7
|
1.0
|
CB
|
A:CYS238
|
4.4
|
12.6
|
1.0
|
SG
|
A:CYS217
|
4.4
|
21.6
|
1.0
|
CA
|
A:HIS219
|
4.6
|
13.7
|
1.0
|
HD11
|
A:LEU220
|
4.6
|
9.5
|
1.0
|
SG
|
A:CYS236
|
4.6
|
19.1
|
1.0
|
C
|
A:HIS219
|
4.7
|
15.0
|
1.0
|
C
|
A:CYS238
|
4.7
|
15.1
|
1.0
|
HD12
|
A:LEU220
|
4.7
|
8.9
|
1.0
|
CG
|
A:LEU220
|
4.7
|
11.2
|
1.0
|
OG
|
A:SER241
|
4.7
|
22.8
|
1.0
|
CA
|
A:LEU220
|
4.8
|
10.4
|
1.0
|
HG3
|
A:PRO253
|
4.8
|
16.4
|
1.0
|
C
|
A:HIS239
|
4.9
|
18.1
|
1.0
|
CG
|
A:PRO253
|
4.9
|
15.9
|
1.0
|
CD1
|
A:LEU220
|
4.9
|
8.3
|
1.0
|
H
|
A:HIS219
|
4.9
|
18.1
|
1.0
|
HE2
|
A:HIS239
|
5.0
|
11.1
|
1.0
|
H
|
A:GLY240
|
5.0
|
18.5
|
1.0
|
HB2
|
A:CYS222
|
5.0
|
14.8
|
1.0
|
|
Iron binding site 4 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 4 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe405
b:19.0
occ:1.00
|
FE
|
J:HEM405
|
0.0
|
19.0
|
1.0
|
NB
|
J:HEM405
|
2.0
|
19.0
|
1.0
|
ND
|
J:HEM405
|
2.0
|
19.0
|
1.0
|
NA
|
J:HEM405
|
2.1
|
19.0
|
1.0
|
NC
|
J:HEM405
|
2.1
|
19.0
|
1.0
|
NE2
|
J:HIS83
|
2.2
|
9.9
|
1.0
|
NE2
|
J:HIS182
|
2.5
|
13.6
|
1.0
|
CE1
|
J:HIS83
|
2.9
|
8.5
|
1.0
|
HE1
|
J:HIS83
|
2.9
|
10.4
|
1.0
|
C4B
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C1A
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C4D
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C1C
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C4A
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C1B
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C1D
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
C4C
|
J:HEM405
|
3.1
|
19.0
|
1.0
|
HE1
|
J:HIS182
|
3.3
|
13.8
|
1.0
|
CE1
|
J:HIS182
|
3.3
|
11.6
|
1.0
|
CD2
|
J:HIS83
|
3.3
|
10.7
|
1.0
|
CHC
|
J:HEM405
|
3.4
|
19.0
|
1.0
|
CHA
|
J:HEM405
|
3.4
|
19.0
|
1.0
|
CHB
|
J:HEM405
|
3.5
|
19.0
|
1.0
|
CHD
|
J:HEM405
|
3.5
|
19.0
|
1.0
|
HD2
|
J:HIS83
|
3.6
|
11.7
|
1.0
|
CD2
|
J:HIS182
|
3.7
|
10.9
|
1.0
|
HD2
|
J:HIS182
|
3.9
|
12.1
|
1.0
|
ND1
|
J:HIS83
|
4.1
|
10.1
|
1.0
|
C2A
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C3D
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C3A
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C3B
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C2D
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C2C
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C2B
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
C3C
|
J:HEM405
|
4.3
|
19.0
|
1.0
|
CG
|
J:HIS83
|
4.4
|
12.3
|
1.0
|
HHC
|
J:HEM405
|
4.4
|
19.0
|
1.0
|
HHD
|
J:HEM405
|
4.4
|
19.0
|
1.0
|
HHA
|
J:HEM405
|
4.4
|
19.0
|
1.0
|
HHB
|
J:HEM405
|
4.4
|
19.0
|
1.0
|
ND1
|
J:HIS182
|
4.5
|
12.0
|
1.0
|
HA3
|
J:GLY130
|
4.6
|
13.8
|
1.0
|
HA3
|
J:GLY48
|
4.6
|
12.5
|
1.0
|
HE21
|
J:GLN44
|
4.6
|
12.2
|
1.0
|
HE22
|
J:GLN44
|
4.6
|
11.1
|
1.0
|
CG
|
J:HIS182
|
4.7
|
13.6
|
1.0
|
HA2
|
J:GLY48
|
4.7
|
11.8
|
1.0
|
NE2
|
J:GLN44
|
4.8
|
11.3
|
1.0
|
HD1
|
J:HIS83
|
4.9
|
12.0
|
1.0
|
|
Iron binding site 5 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 5 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe406
b:11.7
occ:1.00
|
FE
|
J:HEM406
|
0.0
|
11.7
|
1.0
|
ND
|
J:HEM406
|
2.0
|
11.7
|
1.0
|
NB
|
J:HEM406
|
2.0
|
11.7
|
1.0
|
NA
|
J:HEM406
|
2.1
|
11.7
|
1.0
|
NC
|
J:HEM406
|
2.1
|
11.7
|
1.0
|
NE2
|
J:HIS196
|
2.3
|
10.0
|
1.0
|
NE2
|
J:HIS97
|
2.7
|
15.6
|
1.0
|
C1D
|
J:HEM406
|
3.0
|
11.7
|
1.0
|
C1B
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
C4D
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
C4A
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
C4C
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
C4B
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
C1C
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
C1A
|
J:HEM406
|
3.1
|
11.7
|
1.0
|
CE1
|
J:HIS196
|
3.1
|
10.7
|
1.0
|
CD2
|
J:HIS196
|
3.2
|
13.0
|
1.0
|
HE1
|
J:HIS196
|
3.2
|
12.3
|
1.0
|
CHB
|
J:HEM406
|
3.4
|
11.7
|
1.0
|
CHD
|
J:HEM406
|
3.4
|
11.7
|
1.0
|
CE1
|
J:HIS97
|
3.4
|
12.1
|
1.0
|
CHC
|
J:HEM406
|
3.4
|
11.7
|
1.0
|
CHA
|
J:HEM406
|
3.5
|
11.7
|
1.0
|
HD2
|
J:HIS196
|
3.5
|
13.9
|
1.0
|
HE1
|
J:HIS97
|
3.5
|
14.2
|
1.0
|
CD2
|
J:HIS97
|
3.7
|
18.1
|
1.0
|
HD2
|
J:HIS97
|
3.9
|
17.8
|
1.0
|
ND1
|
J:HIS196
|
4.2
|
13.6
|
1.0
|
C2D
|
J:HEM406
|
4.2
|
11.7
|
1.0
|
C3D
|
J:HEM406
|
4.2
|
11.7
|
1.0
|
C2B
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
C3A
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
C3B
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
CG
|
J:HIS196
|
4.3
|
15.5
|
1.0
|
C3C
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
C2C
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
C2A
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
HHD
|
J:HEM406
|
4.3
|
11.7
|
1.0
|
HHB
|
J:HEM406
|
4.4
|
11.7
|
1.0
|
HHA
|
J:HEM406
|
4.4
|
11.7
|
1.0
|
HHC
|
J:HEM406
|
4.4
|
11.7
|
1.0
|
ND1
|
J:HIS97
|
4.6
|
12.1
|
1.0
|
HG22
|
J:THR112
|
4.6
|
13.6
|
1.0
|
CG
|
J:HIS97
|
4.7
|
14.5
|
1.0
|
HA2
|
J:GLY116
|
4.8
|
14.9
|
1.0
|
H2
|
J:HOH507
|
4.8
|
50.0
|
1.0
|
HD12
|
J:LEU119
|
4.9
|
13.7
|
1.0
|
HD1
|
J:HIS196
|
4.9
|
14.5
|
1.0
|
HA3
|
J:GLY116
|
5.0
|
15.3
|
1.0
|
|
Iron binding site 6 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 6 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
d:Fe401
b:39.4
occ:1.00
|
FE
|
d:HEC401
|
0.0
|
39.4
|
1.0
|
NE2
|
d:HIS125
|
2.0
|
18.1
|
1.0
|
NA
|
d:HEC401
|
2.1
|
21.5
|
1.0
|
NC
|
d:HEC401
|
2.1
|
23.0
|
1.0
|
NB
|
d:HEC401
|
2.1
|
23.6
|
1.0
|
ND
|
d:HEC401
|
2.1
|
23.8
|
1.0
|
CE1
|
d:HIS125
|
2.8
|
18.0
|
1.0
|
SD
|
d:MET244
|
2.8
|
25.7
|
1.0
|
HE1
|
d:HIS125
|
2.9
|
18.3
|
1.0
|
C1A
|
d:HEC401
|
3.1
|
21.0
|
1.0
|
C4D
|
d:HEC401
|
3.1
|
21.1
|
1.0
|
C4B
|
d:HEC401
|
3.1
|
22.1
|
1.0
|
C1C
|
d:HEC401
|
3.1
|
21.6
|
1.0
|
C4C
|
d:HEC401
|
3.1
|
18.8
|
1.0
|
C4A
|
d:HEC401
|
3.1
|
21.2
|
1.0
|
C1D
|
d:HEC401
|
3.1
|
21.8
|
1.0
|
C1B
|
d:HEC401
|
3.1
|
22.1
|
1.0
|
CD2
|
d:HIS125
|
3.1
|
19.9
|
1.0
|
CHA
|
d:HEC401
|
3.4
|
20.8
|
1.0
|
HD2
|
d:HIS125
|
3.4
|
21.7
|
1.0
|
CHD
|
d:HEC401
|
3.4
|
20.0
|
1.0
|
CHC
|
d:HEC401
|
3.4
|
21.2
|
1.0
|
CHB
|
d:HEC401
|
3.5
|
19.3
|
1.0
|
ND1
|
d:HIS125
|
4.0
|
19.1
|
1.0
|
HB2
|
d:MET244
|
4.0
|
28.4
|
1.0
|
HG3
|
d:MET244
|
4.0
|
28.2
|
1.0
|
HE1
|
d:MET244
|
4.0
|
26.6
|
1.0
|
CG
|
d:MET244
|
4.1
|
28.2
|
1.0
|
CE
|
d:MET244
|
4.1
|
26.5
|
1.0
|
HB3
|
d:PRO194
|
4.1
|
23.1
|
1.0
|
CG
|
d:HIS125
|
4.2
|
20.3
|
1.0
|
C2A
|
d:HEC401
|
4.3
|
21.1
|
1.0
|
C3A
|
d:HEC401
|
4.3
|
21.3
|
1.0
|
C2C
|
d:HEC401
|
4.3
|
23.5
|
1.0
|
C3B
|
d:HEC401
|
4.3
|
24.8
|
1.0
|
C2B
|
d:HEC401
|
4.3
|
25.7
|
1.0
|
C3C
|
d:HEC401
|
4.3
|
23.6
|
1.0
|
HE2
|
d:MET244
|
4.3
|
27.8
|
1.0
|
C3D
|
d:HEC401
|
4.3
|
24.1
|
1.0
|
C2D
|
d:HEC401
|
4.3
|
22.4
|
1.0
|
HHA
|
d:HEC401
|
4.4
|
23.1
|
1.0
|
HHD
|
d:HEC401
|
4.4
|
22.9
|
1.0
|
HHC
|
d:HEC401
|
4.4
|
23.7
|
1.0
|
HHB
|
d:HEC401
|
4.4
|
20.9
|
1.0
|
HB2
|
d:CYS124
|
4.5
|
26.7
|
1.0
|
CB
|
d:MET244
|
4.6
|
26.8
|
1.0
|
HD2
|
d:PRO195
|
4.7
|
21.3
|
1.0
|
HD1
|
d:HIS125
|
4.7
|
19.6
|
1.0
|
HD21
|
d:LEU197
|
4.8
|
18.0
|
1.0
|
HG2
|
d:MET244
|
4.9
|
28.8
|
1.0
|
HE3
|
d:MET244
|
4.9
|
27.9
|
1.0
|
HB3
|
d:MET244
|
4.9
|
29.4
|
1.0
|
|
Iron binding site 7 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 7 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe300
b:39.1
occ:1.00
|
FE1
|
a:FES300
|
0.0
|
39.1
|
1.0
|
S2
|
a:FES300
|
2.2
|
12.5
|
1.0
|
S1
|
a:FES300
|
2.2
|
13.6
|
1.0
|
SG
|
a:CYS236
|
2.3
|
19.1
|
1.0
|
SG
|
a:CYS217
|
2.3
|
21.6
|
1.0
|
FE2
|
a:FES300
|
2.7
|
37.9
|
1.0
|
HG
|
a:CYS217
|
3.1
|
17.9
|
1.0
|
HB3
|
a:HIS219
|
3.1
|
15.0
|
1.0
|
HG
|
a:CYS236
|
3.2
|
15.8
|
1.0
|
HB3
|
a:CYS217
|
3.3
|
16.7
|
1.0
|
CB
|
a:CYS217
|
3.3
|
15.7
|
1.0
|
HG
|
a:SER241
|
3.4
|
22.4
|
1.0
|
HB3
|
a:CYS236
|
3.4
|
20.5
|
1.0
|
HB2
|
a:CYS222
|
3.5
|
14.8
|
1.0
|
HB2
|
a:CYS217
|
3.5
|
16.2
|
1.0
|
CB
|
a:CYS236
|
3.5
|
21.1
|
1.0
|
HB2
|
a:CYS238
|
3.6
|
15.3
|
1.0
|
HB2
|
a:CYS236
|
3.8
|
19.0
|
1.0
|
H
|
a:LEU220
|
3.9
|
14.1
|
1.0
|
H
|
a:HIS239
|
3.9
|
15.9
|
1.0
|
H
|
a:CYS222
|
3.9
|
12.7
|
1.0
|
CB
|
a:HIS219
|
4.0
|
13.3
|
1.0
|
OG
|
a:SER241
|
4.2
|
22.8
|
1.0
|
H
|
a:HIS219
|
4.2
|
18.1
|
1.0
|
HB2
|
a:HIS219
|
4.2
|
13.7
|
1.0
|
CB
|
a:CYS222
|
4.4
|
15.7
|
1.0
|
ND1
|
a:HIS219
|
4.4
|
16.4
|
1.0
|
HB2
|
a:SER241
|
4.4
|
22.0
|
1.0
|
ND1
|
a:HIS239
|
4.4
|
15.8
|
1.0
|
H
|
a:GLY221
|
4.5
|
14.7
|
1.0
|
H
|
a:CYS238
|
4.5
|
16.2
|
1.0
|
CB
|
a:CYS238
|
4.5
|
12.6
|
1.0
|
H
|
a:SER241
|
4.6
|
22.3
|
1.0
|
N
|
a:HIS239
|
4.6
|
17.6
|
1.0
|
N
|
a:CYS222
|
4.7
|
11.9
|
1.0
|
HB2
|
a:HIS239
|
4.7
|
14.3
|
1.0
|
N
|
a:LEU220
|
4.7
|
13.0
|
1.0
|
CG
|
a:HIS219
|
4.7
|
14.9
|
1.0
|
HB3
|
a:CYS238
|
4.8
|
12.6
|
1.0
|
CA
|
a:CYS217
|
4.8
|
15.8
|
1.0
|
H
|
a:GLY240
|
4.8
|
18.5
|
1.0
|
CB
|
a:SER241
|
4.8
|
21.9
|
1.0
|
CA
|
a:CYS236
|
4.9
|
19.0
|
1.0
|
N
|
a:HIS219
|
4.9
|
18.1
|
1.0
|
HB3
|
a:CYS222
|
5.0
|
14.8
|
1.0
|
|
Iron binding site 8 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 8 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe300
b:37.9
occ:1.00
|
FE2
|
a:FES300
|
0.0
|
37.9
|
1.0
|
ND1
|
a:HIS239
|
2.1
|
15.8
|
1.0
|
ND1
|
a:HIS219
|
2.2
|
16.4
|
1.0
|
S2
|
a:FES300
|
2.2
|
12.5
|
1.0
|
S1
|
a:FES300
|
2.2
|
13.6
|
1.0
|
FE1
|
a:FES300
|
2.7
|
39.1
|
1.0
|
HB3
|
a:HIS219
|
2.8
|
15.0
|
1.0
|
HB2
|
a:HIS239
|
2.8
|
14.3
|
1.0
|
CG
|
a:HIS239
|
3.1
|
12.6
|
1.0
|
CE1
|
a:HIS239
|
3.1
|
10.9
|
1.0
|
CG
|
a:HIS219
|
3.1
|
14.9
|
1.0
|
CE1
|
a:HIS219
|
3.1
|
9.8
|
1.0
|
HE1
|
a:HIS239
|
3.3
|
11.9
|
1.0
|
HE1
|
a:HIS219
|
3.3
|
10.1
|
1.0
|
CB
|
a:HIS219
|
3.4
|
13.3
|
1.0
|
CB
|
a:HIS239
|
3.4
|
13.9
|
1.0
|
HB2
|
a:LEU220
|
3.5
|
11.8
|
1.0
|
H
|
a:HIS239
|
3.5
|
15.9
|
1.0
|
H
|
a:LEU220
|
3.6
|
14.1
|
1.0
|
HB2
|
a:CYS238
|
3.8
|
15.3
|
1.0
|
HB2
|
a:HIS219
|
3.9
|
13.7
|
1.0
|
N
|
a:HIS239
|
3.9
|
17.6
|
1.0
|
N
|
a:LEU220
|
4.1
|
13.0
|
1.0
|
HG2
|
a:PRO253
|
4.1
|
16.5
|
1.0
|
HB3
|
a:CYS238
|
4.1
|
12.6
|
1.0
|
HG
|
a:SER241
|
4.1
|
22.4
|
1.0
|
HB3
|
a:HIS239
|
4.2
|
13.2
|
1.0
|
CA
|
a:HIS239
|
4.2
|
14.9
|
1.0
|
NE2
|
a:HIS239
|
4.2
|
10.2
|
1.0
|
CD2
|
a:HIS239
|
4.2
|
9.9
|
1.0
|
NE2
|
a:HIS219
|
4.2
|
10.3
|
1.0
|
CD2
|
a:HIS219
|
4.3
|
13.2
|
1.0
|
HG
|
a:LEU220
|
4.3
|
12.1
|
1.0
|
CB
|
a:LEU220
|
4.4
|
10.7
|
1.0
|
CB
|
a:CYS238
|
4.4
|
12.6
|
1.0
|
SG
|
a:CYS217
|
4.4
|
21.6
|
1.0
|
CA
|
a:HIS219
|
4.6
|
13.7
|
1.0
|
HD11
|
a:LEU220
|
4.6
|
9.5
|
1.0
|
SG
|
a:CYS236
|
4.6
|
19.1
|
1.0
|
C
|
a:HIS219
|
4.7
|
15.0
|
1.0
|
C
|
a:CYS238
|
4.7
|
15.1
|
1.0
|
HD12
|
a:LEU220
|
4.7
|
8.9
|
1.0
|
CG
|
a:LEU220
|
4.7
|
11.2
|
1.0
|
OG
|
a:SER241
|
4.7
|
22.8
|
1.0
|
CA
|
a:LEU220
|
4.8
|
10.4
|
1.0
|
HG3
|
a:PRO253
|
4.8
|
16.4
|
1.0
|
C
|
a:HIS239
|
4.9
|
18.1
|
1.0
|
CG
|
a:PRO253
|
4.9
|
15.9
|
1.0
|
CD1
|
a:LEU220
|
4.9
|
8.3
|
1.0
|
H
|
a:HIS219
|
4.9
|
18.1
|
1.0
|
HE2
|
a:HIS239
|
5.0
|
11.1
|
1.0
|
H
|
a:GLY240
|
5.0
|
18.5
|
1.0
|
HB2
|
a:CYS222
|
5.0
|
14.8
|
1.0
|
|
Iron binding site 9 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 9 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
j:Fe405
b:19.0
occ:1.00
|
FE
|
j:HEM405
|
0.0
|
19.0
|
1.0
|
NB
|
j:HEM405
|
2.0
|
19.0
|
1.0
|
ND
|
j:HEM405
|
2.0
|
19.0
|
1.0
|
NA
|
j:HEM405
|
2.1
|
19.0
|
1.0
|
NC
|
j:HEM405
|
2.1
|
19.0
|
1.0
|
NE2
|
j:HIS83
|
2.1
|
9.9
|
1.0
|
NE2
|
j:HIS182
|
2.6
|
13.6
|
1.0
|
CE1
|
j:HIS83
|
2.9
|
8.5
|
1.0
|
HE1
|
j:HIS83
|
2.9
|
10.4
|
1.0
|
C1A
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C4B
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C4D
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C1C
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C4A
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C1B
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C1D
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
C4C
|
j:HEM405
|
3.1
|
19.0
|
1.0
|
CD2
|
j:HIS83
|
3.3
|
10.7
|
1.0
|
HE1
|
j:HIS182
|
3.3
|
13.8
|
1.0
|
CE1
|
j:HIS182
|
3.4
|
11.6
|
1.0
|
CHC
|
j:HEM405
|
3.4
|
19.0
|
1.0
|
CHA
|
j:HEM405
|
3.4
|
19.0
|
1.0
|
CHB
|
j:HEM405
|
3.5
|
19.0
|
1.0
|
CHD
|
j:HEM405
|
3.5
|
19.0
|
1.0
|
HD2
|
j:HIS83
|
3.6
|
11.7
|
1.0
|
CD2
|
j:HIS182
|
3.7
|
10.9
|
1.0
|
HD2
|
j:HIS182
|
4.0
|
12.1
|
1.0
|
ND1
|
j:HIS83
|
4.1
|
10.1
|
1.0
|
C2A
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
C3D
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
C3A
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
C3B
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
CG
|
j:HIS83
|
4.3
|
12.3
|
1.0
|
C2D
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
C2C
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
C2B
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
C3C
|
j:HEM405
|
4.3
|
19.0
|
1.0
|
HHC
|
j:HEM405
|
4.4
|
19.0
|
1.0
|
HHA
|
j:HEM405
|
4.4
|
19.0
|
1.0
|
HHD
|
j:HEM405
|
4.4
|
19.0
|
1.0
|
HHB
|
j:HEM405
|
4.4
|
19.0
|
1.0
|
HA3
|
j:GLY48
|
4.5
|
12.5
|
1.0
|
ND1
|
j:HIS182
|
4.6
|
12.0
|
1.0
|
HA3
|
j:GLY130
|
4.6
|
13.8
|
1.0
|
HE22
|
j:GLN44
|
4.6
|
11.1
|
1.0
|
HE21
|
j:GLN44
|
4.6
|
12.2
|
1.0
|
HA2
|
j:GLY48
|
4.7
|
11.8
|
1.0
|
CG
|
j:HIS182
|
4.8
|
13.6
|
1.0
|
HD1
|
j:HIS83
|
4.8
|
12.0
|
1.0
|
NE2
|
j:GLN44
|
4.8
|
11.3
|
1.0
|
|
Iron binding site 10 out
of 10 in 9h8t
Go back to
Iron Binding Sites List in 9h8t
Iron binding site 10 out
of 10 in the Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of the Atovaquone-Inhibited Complex III From the Chlorocebus Sabaeus Respirasome within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
j:Fe406
b:11.7
occ:1.00
|
FE
|
j:HEM406
|
0.0
|
11.7
|
1.0
|
ND
|
j:HEM406
|
2.0
|
11.7
|
1.0
|
NB
|
j:HEM406
|
2.0
|
11.7
|
1.0
|
NA
|
j:HEM406
|
2.1
|
11.7
|
1.0
|
NC
|
j:HEM406
|
2.1
|
11.7
|
1.0
|
NE2
|
j:HIS196
|
2.3
|
10.0
|
1.0
|
NE2
|
j:HIS97
|
2.7
|
15.6
|
1.0
|
C1D
|
j:HEM406
|
3.0
|
11.7
|
1.0
|
C1B
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
C4D
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
C4A
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
C4C
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
C4B
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
C1C
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
C1A
|
j:HEM406
|
3.1
|
11.7
|
1.0
|
CE1
|
j:HIS196
|
3.2
|
10.7
|
1.0
|
CD2
|
j:HIS196
|
3.2
|
13.0
|
1.0
|
HE1
|
j:HIS196
|
3.3
|
12.3
|
1.0
|
CE1
|
j:HIS97
|
3.4
|
12.1
|
1.0
|
HD2
|
j:HIS196
|
3.4
|
13.9
|
1.0
|
CHB
|
j:HEM406
|
3.4
|
11.7
|
1.0
|
CHD
|
j:HEM406
|
3.4
|
11.7
|
1.0
|
HE1
|
j:HIS97
|
3.4
|
14.2
|
1.0
|
CHC
|
j:HEM406
|
3.4
|
11.7
|
1.0
|
CHA
|
j:HEM406
|
3.5
|
11.7
|
1.0
|
CD2
|
j:HIS97
|
3.7
|
18.1
|
1.0
|
HD2
|
j:HIS97
|
3.9
|
17.8
|
1.0
|
C2D
|
j:HEM406
|
4.2
|
11.7
|
1.0
|
ND1
|
j:HIS196
|
4.2
|
13.6
|
1.0
|
C3D
|
j:HEM406
|
4.2
|
11.7
|
1.0
|
C2B
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
C3A
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
C3B
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
CG
|
j:HIS196
|
4.3
|
15.5
|
1.0
|
C3C
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
C2C
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
C2A
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
HHD
|
j:HEM406
|
4.3
|
11.7
|
1.0
|
HHB
|
j:HEM406
|
4.4
|
11.7
|
1.0
|
HHA
|
j:HEM406
|
4.4
|
11.7
|
1.0
|
HHC
|
j:HEM406
|
4.4
|
11.7
|
1.0
|
ND1
|
j:HIS97
|
4.5
|
12.1
|
1.0
|
HG22
|
j:THR112
|
4.7
|
13.6
|
1.0
|
CG
|
j:HIS97
|
4.7
|
14.5
|
1.0
|
HA2
|
j:GLY116
|
4.9
|
14.9
|
1.0
|
HD12
|
j:LEU119
|
5.0
|
13.7
|
1.0
|
HD13
|
j:LEU37
|
5.0
|
16.3
|
1.0
|
HD1
|
j:HIS196
|
5.0
|
14.5
|
1.0
|
HH22
|
j:ARG100
|
5.0
|
16.5
|
1.0
|
|
Reference:
A.E.Maclean,
S.Shikha,
M.Ferreira Silva,
M.J.Gramelspacher,
A.Nilsen,
K.M.Liebman,
S.Pou,
R.W.Winter,
A.Meir,
M.K.Riscoe,
J.S.Doggett,
L.Sheiner,
A.Muhleip.
Structure, Assembly and Inhibition of the Toxoplasma Gondii Respiratory Chain Supercomplex. Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985
PubMed: 40389671
DOI: 10.1038/S41594-025-01531-7
Page generated: Fri Aug 8 06:41:58 2025
|