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Iron in PDB 9hi3: C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1

Protein crystallography data

The structure of C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1, PDB code: 9hi3 was solved by M.Wojnowska, A.Bogucka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.42 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 66.678, 67.446, 85.969, 90, 90, 90
R / Rfree (%) 15.9 / 20.5

Other elements in 9hi3:

The structure of C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Potassium (K) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1 (pdb code 9hi3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1, PDB code: 9hi3:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9hi3

Go back to Iron Binding Sites List in 9hi3
Iron binding site 1 out of 2 in the C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:15.4
occ:1.00
FE1 A:FES301 0.0 15.4 1.0
S2 A:FES301 2.2 14.8 1.0
SG A:CYS190 2.2 15.9 1.0
S1 A:FES301 2.2 14.5 1.0
SG A:CYS160 2.3 16.4 1.0
FE2 A:FES301 2.8 15.8 1.0
CB A:CYS190 3.2 15.8 1.0
CB A:CYS160 3.4 15.4 1.0
N A:CYS190 4.1 16.9 1.0
CA A:CYS190 4.2 17.1 1.0
N A:GLY155 4.3 15.5 1.0
N A:CYS160 4.3 17.2 1.0
N A:ARG153 4.4 16.4 1.0
CA A:CYS160 4.5 15.7 1.0
SG A:CYS152 4.5 16.9 1.0
CA A:ARG153 4.5 16.5 1.0
CB A:LEU188 4.5 17.4 1.0
CA A:GLY155 4.6 15.8 1.0
SG A:CYS157 4.6 14.4 1.0
N A:ALA154 4.8 17.9 1.0
O A:CYS157 4.9 15.2 1.0
C A:ARG153 4.9 18.6 1.0
C A:CYS190 5.0 16.5 1.0

Iron binding site 2 out of 2 in 9hi3

Go back to Iron Binding Sites List in 9hi3
Iron binding site 2 out of 2 in the C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:15.8
occ:1.00
FE2 A:FES301 0.0 15.8 1.0
S1 A:FES301 2.2 14.5 1.0
S2 A:FES301 2.2 14.8 1.0
SG A:CYS157 2.2 14.4 1.0
SG A:CYS152 2.4 16.9 1.0
FE1 A:FES301 2.8 15.4 1.0
CB A:CYS157 3.4 12.1 1.0
N A:CYS157 3.5 18.4 1.0
N A:CYS152 3.6 14.2 1.0
CB A:CYS152 3.6 14.3 1.0
N A:ARG153 3.7 16.4 1.0
CA A:CYS157 3.8 15.1 1.0
CA A:CYS152 3.9 14.1 1.0
C A:CYS157 4.1 13.3 1.0
O A:CYS157 4.1 15.2 1.0
N A:SER156 4.2 17.3 1.0
C A:CYS152 4.3 14.8 1.0
SG A:CYS190 4.3 15.9 1.0
C A:SER156 4.3 17.2 1.0
N A:ALA154 4.4 17.9 1.0
N A:GLY155 4.5 15.5 1.0
N A:SER151 4.6 17.5 1.0
SG A:CYS160 4.6 16.4 1.0
OG A:SER151 4.6 24.3 1.0
CA A:ARG153 4.6 16.5 1.0
C A:SER151 4.6 16.7 1.0
N A:SER159 4.7 16.5 1.0
N A:SER158 4.7 14.3 1.0
CB A:SER159 4.8 18.2 1.0
CA A:SER156 4.9 16.6 1.0
CA A:GLY155 4.9 15.8 1.0
C A:GLY155 4.9 15.0 1.0

Reference:

M.Wojnowska, A.Bogucka. C-Terminal Domain of Pectobacterial Fusb in Complex with Spinach Ferredoxin 1 To Be Published.
Page generated: Fri Aug 8 06:45:24 2025

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