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Iron in PDB 9ihf: Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase

Iron Binding Sites:

The binding sites of Iron atom in the Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase (pdb code 9ihf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase, PDB code: 9ihf:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 9ihf

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Iron binding site 1 out of 3 in the Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Fe601

b:62.8
occ:1.00
FE L:HEM601 0.0 62.8 1.0
NB L:HEM601 2.0 56.7 1.0
NC L:HEM601 2.0 53.9 1.0
ND L:HEM601 2.0 52.7 1.0
NA L:HEM601 2.1 62.9 1.0
NE2 L:HIS336 2.4 55.7 1.0
C4B L:HEM601 3.0 51.1 1.0
C1B L:HEM601 3.0 61.8 1.0
C1C L:HEM601 3.0 44.5 1.0
C1A L:HEM601 3.0 65.9 1.0
C1D L:HEM601 3.1 51.0 1.0
C4D L:HEM601 3.1 65.8 1.0
C4A L:HEM601 3.1 59.3 1.0
C4C L:HEM601 3.1 52.1 1.0
CE1 L:HIS336 3.1 58.4 1.0
CHC L:HEM601 3.4 42.1 1.0
CHA L:HEM601 3.4 70.9 1.0
CHD L:HEM601 3.4 52.1 1.0
CHB L:HEM601 3.4 59.2 1.0
CD2 L:HIS336 3.5 48.5 1.0
C2B L:HEM601 4.2 64.5 1.0
C3B L:HEM601 4.2 61.5 1.0
C2A L:HEM601 4.3 64.4 1.0
C3A L:HEM601 4.3 61.5 1.0
C2D L:HEM601 4.3 64.7 1.0
C3D L:HEM601 4.3 72.8 1.0
C2C L:HEM601 4.3 39.5 1.0
C3C L:HEM601 4.3 43.3 1.0
ND1 L:HIS336 4.3 45.0 1.0
CG L:HIS336 4.5 42.7 1.0

Iron binding site 2 out of 3 in 9ihf

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Iron binding site 2 out of 3 in the Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe601

b:62.7
occ:1.00
FE N:HEM601 0.0 62.7 1.0
NC N:HEM601 2.0 49.0 1.0
NB N:HEM601 2.0 54.0 1.0
ND N:HEM601 2.0 53.5 1.0
NA N:HEM601 2.0 50.3 1.0
NE2 N:HIS336 2.2 65.9 1.0
C4A N:HEM601 3.0 50.7 1.0
C1A N:HEM601 3.0 47.9 1.0
C1B N:HEM601 3.0 53.0 1.0
C4D N:HEM601 3.0 54.7 1.0
C1C N:HEM601 3.0 49.0 1.0
C4C N:HEM601 3.1 51.0 1.0
C1D N:HEM601 3.1 54.1 1.0
C4B N:HEM601 3.1 50.8 1.0
CE1 N:HIS336 3.1 70.6 1.0
CD2 N:HIS336 3.3 72.2 1.0
CHB N:HEM601 3.4 53.1 1.0
CHA N:HEM601 3.4 52.8 1.0
CHD N:HEM601 3.4 53.0 1.0
CHC N:HEM601 3.4 49.7 1.0
C3A N:HEM601 4.2 48.9 1.0
C2A N:HEM601 4.2 46.7 1.0
C2B N:HEM601 4.3 49.6 1.0
C3D N:HEM601 4.3 58.5 1.0
C2C N:HEM601 4.3 49.4 1.0
C2D N:HEM601 4.3 55.9 1.0
ND1 N:HIS336 4.3 59.4 1.0
C3B N:HEM601 4.3 52.5 1.0
C3C N:HEM601 4.3 50.9 1.0
CG N:HIS336 4.4 60.4 1.0

Iron binding site 3 out of 3 in 9ihf

Go back to Iron Binding Sites List in 9ihf
Iron binding site 3 out of 3 in the Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Nucleosome Core Particle Bound By One Monomer and One Dimer of of Dtt- Reduced Native Myeloperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe601

b:75.1
occ:1.00
FE P:HEM601 0.0 75.1 1.0
NC P:HEM601 2.0 62.4 1.0
NB P:HEM601 2.0 60.1 1.0
NA P:HEM601 2.1 66.8 1.0
ND P:HEM601 2.1 61.6 1.0
NE2 P:HIS336 2.3 71.5 1.0
C4A P:HEM601 3.0 62.6 1.0
C1A P:HEM601 3.0 67.0 1.0
C4C P:HEM601 3.1 65.0 1.0
C1B P:HEM601 3.1 57.1 1.0
C1D P:HEM601 3.1 62.5 1.0
C1C P:HEM601 3.1 56.6 1.0
C4D P:HEM601 3.1 65.9 1.0
C4B P:HEM601 3.1 58.8 1.0
CE1 P:HIS336 3.3 76.5 1.0
CD2 P:HIS336 3.3 74.4 1.0
CHB P:HEM601 3.4 59.5 1.0
CHD P:HEM601 3.4 66.5 1.0
CHA P:HEM601 3.4 70.5 1.0
CHC P:HEM601 3.4 59.3 1.0
C3A P:HEM601 4.2 63.2 1.0
C2A P:HEM601 4.2 66.9 1.0
C2C P:HEM601 4.3 54.8 1.0
C3C P:HEM601 4.3 59.7 1.0
C2B P:HEM601 4.3 56.4 1.0
C2D P:HEM601 4.3 63.4 1.0
C3B P:HEM601 4.3 57.3 1.0
C3D P:HEM601 4.3 66.9 1.0
ND1 P:HIS336 4.4 70.4 1.0
OE1 O:GLN91 4.4 68.5 1.0
CG P:HIS336 4.4 67.7 1.0

Reference:

G.L.Burn, T.Raisch, S.Tacke, M.Winkler, D.Prumbaum, S.Thee, S.Raunser, A.Zychlinsky. Myeloperoxidase Transforms Chromatin Into Neutrophil Extracellular Traps To Be Published.
Page generated: Sat Aug 23 03:19:34 2025

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