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Iron in PDB 9imn: Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii

Enzymatic activity of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii

All present enzymatic activity of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii:
1.10.3.9;

Other elements in 9imn:

The structure of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Magnesium (Mg) 70 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii (pdb code 9imn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii, PDB code: 9imn:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 9imn

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Iron binding site 1 out of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:90.0
occ:1.00
NE2 D:HIS214 2.2 55.9 1.0
NE2 A:HIS215 2.2 58.9 1.0
NE2 D:HIS268 2.3 59.0 1.0
NE2 A:HIS272 2.3 62.2 1.0
O3 D:BCT402 2.3 66.4 1.0
O2 D:BCT402 2.3 72.5 1.0
C D:BCT402 2.8 70.1 1.0
CE1 A:HIS272 3.0 66.6 1.0
CE1 A:HIS215 3.1 60.1 1.0
CD2 D:HIS214 3.1 59.4 1.0
CE1 D:HIS268 3.1 65.8 1.0
CE1 D:HIS214 3.3 58.5 1.0
CD2 A:HIS215 3.4 56.9 1.0
CD2 D:HIS268 3.4 52.0 1.0
CD2 A:HIS272 3.4 69.2 1.0
O1 D:BCT402 4.0 72.4 1.0
ND1 A:HIS272 4.2 61.2 1.0
ND1 A:HIS215 4.2 57.2 1.0
CG D:HIS214 4.3 49.3 1.0
ND1 D:HIS268 4.3 53.2 1.0
ND1 D:HIS214 4.3 53.1 1.0
CG A:HIS272 4.4 62.5 1.0
CG A:HIS215 4.4 57.1 1.0
CG D:HIS268 4.4 44.3 1.0
CG2 A:VAL219 4.6 65.8 1.0
CG2 D:VAL218 4.8 64.8 1.0

Iron binding site 2 out of 4 in 9imn

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Iron binding site 2 out of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe102

b:159.2
occ:1.00
FE F:HEM102 0.0 159.2 1.0
NA F:HEM102 2.0 139.0 1.0
NC F:HEM102 2.0 135.9 1.0
NB F:HEM102 2.0 139.7 1.0
ND F:HEM102 2.1 141.0 1.0
NE2 E:HIS23 2.1 151.4 1.0
NE2 F:HIS23 2.1 131.3 1.0
CE1 F:HIS23 2.4 130.2 1.0
CE1 E:HIS23 2.7 150.0 1.0
C1A F:HEM102 3.0 137.5 1.0
C4A F:HEM102 3.0 134.6 1.0
C1B F:HEM102 3.1 137.5 1.0
C1C F:HEM102 3.1 133.5 1.0
C4D F:HEM102 3.1 137.7 1.0
C1D F:HEM102 3.1 137.1 1.0
C4C F:HEM102 3.1 136.6 1.0
C4B F:HEM102 3.1 135.9 1.0
CD2 E:HIS23 3.2 149.5 1.0
CD2 F:HIS23 3.3 127.7 1.0
CHA F:HEM102 3.4 138.1 1.0
CHB F:HEM102 3.4 134.4 1.0
CHC F:HEM102 3.4 133.1 1.0
CHD F:HEM102 3.4 137.4 1.0
ND1 F:HIS23 3.5 126.0 1.0
ND1 E:HIS23 3.9 151.2 1.0
CG F:HIS23 3.9 125.2 1.0
CG E:HIS23 4.2 149.6 1.0
C2A F:HEM102 4.2 136.2 1.0
C3A F:HEM102 4.2 134.6 1.0
C3D F:HEM102 4.3 135.7 1.0
C2B F:HEM102 4.3 137.0 1.0
C2D F:HEM102 4.3 134.7 1.0
C3B F:HEM102 4.3 136.0 1.0
C2C F:HEM102 4.3 134.6 1.0
C3C F:HEM102 4.3 134.8 1.0
NE1 F:TRP19 4.5 132.1 1.0
CD1 F:TRP19 5.0 132.6 1.0

Iron binding site 3 out of 4 in 9imn

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Iron binding site 3 out of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe401

b:95.5
occ:1.00
NE2 a:HIS215 2.2 57.3 1.0
NE2 d:HIS214 2.2 58.4 1.0
NE2 d:HIS268 2.2 61.4 1.0
NE2 a:HIS272 2.2 63.1 1.0
O3 d:BCT402 2.3 63.8 1.0
O2 d:BCT402 2.3 72.5 1.0
C d:BCT402 2.8 68.6 1.0
CE1 a:HIS215 3.0 56.4 1.0
CE1 a:HIS272 3.0 67.5 1.0
CD2 d:HIS214 3.1 60.8 1.0
CE1 d:HIS268 3.2 67.1 1.0
CD2 d:HIS268 3.3 53.0 1.0
CE1 d:HIS214 3.3 60.8 1.0
CD2 a:HIS272 3.3 62.6 1.0
CD2 a:HIS215 3.4 55.7 1.0
O1 d:BCT402 4.0 70.8 1.0
ND1 a:HIS272 4.2 61.2 1.0
ND1 a:HIS215 4.2 55.8 1.0
CG d:HIS214 4.3 52.0 1.0
ND1 d:HIS268 4.3 57.1 1.0
ND1 d:HIS214 4.3 53.7 1.0
CG a:HIS272 4.4 58.4 1.0
CG d:HIS268 4.4 46.5 1.0
CG a:HIS215 4.4 57.0 1.0
CG2 a:VAL219 4.6 67.3 1.0
CG2 d:VAL218 5.0 65.7 1.0

Iron binding site 4 out of 4 in 9imn

Go back to Iron Binding Sites List in 9imn
Iron binding site 4 out of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
e:Fe101

b:160.8
occ:1.00
FE e:HEM101 0.0 160.8 1.0
NC e:HEM101 2.0 136.1 1.0
NA e:HEM101 2.0 139.2 1.0
NB e:HEM101 2.1 140.3 1.0
ND e:HEM101 2.1 142.0 1.0
NE2 e:HIS23 2.1 153.9 1.0
NE2 f:HIS23 2.1 130.8 1.0
CE1 f:HIS23 2.5 129.1 1.0
CE1 e:HIS23 2.7 152.7 1.0
C4A e:HEM101 3.0 135.2 1.0
C1A e:HEM101 3.0 136.9 1.0
C1D e:HEM101 3.0 137.3 1.0
C4C e:HEM101 3.1 136.2 1.0
C1B e:HEM101 3.1 137.0 1.0
C4D e:HEM101 3.1 138.9 1.0
C1C e:HEM101 3.1 134.5 1.0
C4B e:HEM101 3.1 136.3 1.0
CD2 e:HIS23 3.2 151.5 1.0
CD2 f:HIS23 3.3 126.3 1.0
CHB e:HEM101 3.4 134.3 1.0
CHD e:HEM101 3.4 137.0 1.0
CHA e:HEM101 3.4 138.1 1.0
CHC e:HEM101 3.4 134.1 1.0
ND1 f:HIS23 3.7 124.6 1.0
ND1 e:HIS23 3.8 154.6 1.0
CG e:HIS23 4.1 152.4 1.0
CG f:HIS23 4.1 122.8 1.0
C3A e:HEM101 4.2 135.9 1.0
C2A e:HEM101 4.2 136.4 1.0
C2D e:HEM101 4.2 134.3 1.0
C3D e:HEM101 4.3 136.7 1.0
C2B e:HEM101 4.3 136.8 1.0
C3C e:HEM101 4.3 134.5 1.0
C2C e:HEM101 4.3 135.2 1.0
C3B e:HEM101 4.3 136.3 1.0
NE1 f:TRP19 4.5 133.2 1.0

Reference:

Y.Wang, C.Wang, A.Li, Z.Liu. TEF30 Fulfills Versatile Functions in the Photosystem II Repair Process To Be Published.
Page generated: Fri Aug 8 06:51:28 2025

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