Iron in PDB 9imn: Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
Enzymatic activity of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
All present enzymatic activity of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii:
1.10.3.9;
Other elements in 9imn:
The structure of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
(pdb code 9imn). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii, PDB code: 9imn:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 9imn
Go back to
Iron Binding Sites List in 9imn
Iron binding site 1 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe401
b:90.0
occ:1.00
|
NE2
|
D:HIS214
|
2.2
|
55.9
|
1.0
|
NE2
|
A:HIS215
|
2.2
|
58.9
|
1.0
|
NE2
|
D:HIS268
|
2.3
|
59.0
|
1.0
|
NE2
|
A:HIS272
|
2.3
|
62.2
|
1.0
|
O3
|
D:BCT402
|
2.3
|
66.4
|
1.0
|
O2
|
D:BCT402
|
2.3
|
72.5
|
1.0
|
C
|
D:BCT402
|
2.8
|
70.1
|
1.0
|
CE1
|
A:HIS272
|
3.0
|
66.6
|
1.0
|
CE1
|
A:HIS215
|
3.1
|
60.1
|
1.0
|
CD2
|
D:HIS214
|
3.1
|
59.4
|
1.0
|
CE1
|
D:HIS268
|
3.1
|
65.8
|
1.0
|
CE1
|
D:HIS214
|
3.3
|
58.5
|
1.0
|
CD2
|
A:HIS215
|
3.4
|
56.9
|
1.0
|
CD2
|
D:HIS268
|
3.4
|
52.0
|
1.0
|
CD2
|
A:HIS272
|
3.4
|
69.2
|
1.0
|
O1
|
D:BCT402
|
4.0
|
72.4
|
1.0
|
ND1
|
A:HIS272
|
4.2
|
61.2
|
1.0
|
ND1
|
A:HIS215
|
4.2
|
57.2
|
1.0
|
CG
|
D:HIS214
|
4.3
|
49.3
|
1.0
|
ND1
|
D:HIS268
|
4.3
|
53.2
|
1.0
|
ND1
|
D:HIS214
|
4.3
|
53.1
|
1.0
|
CG
|
A:HIS272
|
4.4
|
62.5
|
1.0
|
CG
|
A:HIS215
|
4.4
|
57.1
|
1.0
|
CG
|
D:HIS268
|
4.4
|
44.3
|
1.0
|
CG2
|
A:VAL219
|
4.6
|
65.8
|
1.0
|
CG2
|
D:VAL218
|
4.8
|
64.8
|
1.0
|
|
Iron binding site 2 out
of 4 in 9imn
Go back to
Iron Binding Sites List in 9imn
Iron binding site 2 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe102
b:159.2
occ:1.00
|
FE
|
F:HEM102
|
0.0
|
159.2
|
1.0
|
NA
|
F:HEM102
|
2.0
|
139.0
|
1.0
|
NC
|
F:HEM102
|
2.0
|
135.9
|
1.0
|
NB
|
F:HEM102
|
2.0
|
139.7
|
1.0
|
ND
|
F:HEM102
|
2.1
|
141.0
|
1.0
|
NE2
|
E:HIS23
|
2.1
|
151.4
|
1.0
|
NE2
|
F:HIS23
|
2.1
|
131.3
|
1.0
|
CE1
|
F:HIS23
|
2.4
|
130.2
|
1.0
|
CE1
|
E:HIS23
|
2.7
|
150.0
|
1.0
|
C1A
|
F:HEM102
|
3.0
|
137.5
|
1.0
|
C4A
|
F:HEM102
|
3.0
|
134.6
|
1.0
|
C1B
|
F:HEM102
|
3.1
|
137.5
|
1.0
|
C1C
|
F:HEM102
|
3.1
|
133.5
|
1.0
|
C4D
|
F:HEM102
|
3.1
|
137.7
|
1.0
|
C1D
|
F:HEM102
|
3.1
|
137.1
|
1.0
|
C4C
|
F:HEM102
|
3.1
|
136.6
|
1.0
|
C4B
|
F:HEM102
|
3.1
|
135.9
|
1.0
|
CD2
|
E:HIS23
|
3.2
|
149.5
|
1.0
|
CD2
|
F:HIS23
|
3.3
|
127.7
|
1.0
|
CHA
|
F:HEM102
|
3.4
|
138.1
|
1.0
|
CHB
|
F:HEM102
|
3.4
|
134.4
|
1.0
|
CHC
|
F:HEM102
|
3.4
|
133.1
|
1.0
|
CHD
|
F:HEM102
|
3.4
|
137.4
|
1.0
|
ND1
|
F:HIS23
|
3.5
|
126.0
|
1.0
|
ND1
|
E:HIS23
|
3.9
|
151.2
|
1.0
|
CG
|
F:HIS23
|
3.9
|
125.2
|
1.0
|
CG
|
E:HIS23
|
4.2
|
149.6
|
1.0
|
C2A
|
F:HEM102
|
4.2
|
136.2
|
1.0
|
C3A
|
F:HEM102
|
4.2
|
134.6
|
1.0
|
C3D
|
F:HEM102
|
4.3
|
135.7
|
1.0
|
C2B
|
F:HEM102
|
4.3
|
137.0
|
1.0
|
C2D
|
F:HEM102
|
4.3
|
134.7
|
1.0
|
C3B
|
F:HEM102
|
4.3
|
136.0
|
1.0
|
C2C
|
F:HEM102
|
4.3
|
134.6
|
1.0
|
C3C
|
F:HEM102
|
4.3
|
134.8
|
1.0
|
NE1
|
F:TRP19
|
4.5
|
132.1
|
1.0
|
CD1
|
F:TRP19
|
5.0
|
132.6
|
1.0
|
|
Iron binding site 3 out
of 4 in 9imn
Go back to
Iron Binding Sites List in 9imn
Iron binding site 3 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe401
b:95.5
occ:1.00
|
NE2
|
a:HIS215
|
2.2
|
57.3
|
1.0
|
NE2
|
d:HIS214
|
2.2
|
58.4
|
1.0
|
NE2
|
d:HIS268
|
2.2
|
61.4
|
1.0
|
NE2
|
a:HIS272
|
2.2
|
63.1
|
1.0
|
O3
|
d:BCT402
|
2.3
|
63.8
|
1.0
|
O2
|
d:BCT402
|
2.3
|
72.5
|
1.0
|
C
|
d:BCT402
|
2.8
|
68.6
|
1.0
|
CE1
|
a:HIS215
|
3.0
|
56.4
|
1.0
|
CE1
|
a:HIS272
|
3.0
|
67.5
|
1.0
|
CD2
|
d:HIS214
|
3.1
|
60.8
|
1.0
|
CE1
|
d:HIS268
|
3.2
|
67.1
|
1.0
|
CD2
|
d:HIS268
|
3.3
|
53.0
|
1.0
|
CE1
|
d:HIS214
|
3.3
|
60.8
|
1.0
|
CD2
|
a:HIS272
|
3.3
|
62.6
|
1.0
|
CD2
|
a:HIS215
|
3.4
|
55.7
|
1.0
|
O1
|
d:BCT402
|
4.0
|
70.8
|
1.0
|
ND1
|
a:HIS272
|
4.2
|
61.2
|
1.0
|
ND1
|
a:HIS215
|
4.2
|
55.8
|
1.0
|
CG
|
d:HIS214
|
4.3
|
52.0
|
1.0
|
ND1
|
d:HIS268
|
4.3
|
57.1
|
1.0
|
ND1
|
d:HIS214
|
4.3
|
53.7
|
1.0
|
CG
|
a:HIS272
|
4.4
|
58.4
|
1.0
|
CG
|
d:HIS268
|
4.4
|
46.5
|
1.0
|
CG
|
a:HIS215
|
4.4
|
57.0
|
1.0
|
CG2
|
a:VAL219
|
4.6
|
67.3
|
1.0
|
CG2
|
d:VAL218
|
5.0
|
65.7
|
1.0
|
|
Iron binding site 4 out
of 4 in 9imn
Go back to
Iron Binding Sites List in 9imn
Iron binding site 4 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of A TEF30-Associated Intermediate Psii Core Dimer Complex, Type I, From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Fe101
b:160.8
occ:1.00
|
FE
|
e:HEM101
|
0.0
|
160.8
|
1.0
|
NC
|
e:HEM101
|
2.0
|
136.1
|
1.0
|
NA
|
e:HEM101
|
2.0
|
139.2
|
1.0
|
NB
|
e:HEM101
|
2.1
|
140.3
|
1.0
|
ND
|
e:HEM101
|
2.1
|
142.0
|
1.0
|
NE2
|
e:HIS23
|
2.1
|
153.9
|
1.0
|
NE2
|
f:HIS23
|
2.1
|
130.8
|
1.0
|
CE1
|
f:HIS23
|
2.5
|
129.1
|
1.0
|
CE1
|
e:HIS23
|
2.7
|
152.7
|
1.0
|
C4A
|
e:HEM101
|
3.0
|
135.2
|
1.0
|
C1A
|
e:HEM101
|
3.0
|
136.9
|
1.0
|
C1D
|
e:HEM101
|
3.0
|
137.3
|
1.0
|
C4C
|
e:HEM101
|
3.1
|
136.2
|
1.0
|
C1B
|
e:HEM101
|
3.1
|
137.0
|
1.0
|
C4D
|
e:HEM101
|
3.1
|
138.9
|
1.0
|
C1C
|
e:HEM101
|
3.1
|
134.5
|
1.0
|
C4B
|
e:HEM101
|
3.1
|
136.3
|
1.0
|
CD2
|
e:HIS23
|
3.2
|
151.5
|
1.0
|
CD2
|
f:HIS23
|
3.3
|
126.3
|
1.0
|
CHB
|
e:HEM101
|
3.4
|
134.3
|
1.0
|
CHD
|
e:HEM101
|
3.4
|
137.0
|
1.0
|
CHA
|
e:HEM101
|
3.4
|
138.1
|
1.0
|
CHC
|
e:HEM101
|
3.4
|
134.1
|
1.0
|
ND1
|
f:HIS23
|
3.7
|
124.6
|
1.0
|
ND1
|
e:HIS23
|
3.8
|
154.6
|
1.0
|
CG
|
e:HIS23
|
4.1
|
152.4
|
1.0
|
CG
|
f:HIS23
|
4.1
|
122.8
|
1.0
|
C3A
|
e:HEM101
|
4.2
|
135.9
|
1.0
|
C2A
|
e:HEM101
|
4.2
|
136.4
|
1.0
|
C2D
|
e:HEM101
|
4.2
|
134.3
|
1.0
|
C3D
|
e:HEM101
|
4.3
|
136.7
|
1.0
|
C2B
|
e:HEM101
|
4.3
|
136.8
|
1.0
|
C3C
|
e:HEM101
|
4.3
|
134.5
|
1.0
|
C2C
|
e:HEM101
|
4.3
|
135.2
|
1.0
|
C3B
|
e:HEM101
|
4.3
|
136.3
|
1.0
|
NE1
|
f:TRP19
|
4.5
|
133.2
|
1.0
|
|
Reference:
Y.Wang,
C.Wang,
A.Li,
Z.Liu.
TEF30 Fulfills Versatile Functions in the Photosystem II Repair Process To Be Published.
Page generated: Fri Aug 8 06:51:28 2025
|