Iron in PDB 9is4: Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
Enzymatic activity of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
All present enzymatic activity of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii:
1.10.3.9;
Other elements in 9is4:
The structure of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
(pdb code 9is4). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii, PDB code: 9is4:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 9is4
Go back to
Iron Binding Sites List in 9is4
Iron binding site 1 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe401
b:77.2
occ:1.00
|
NE2
|
D:HIS214
|
2.2
|
45.2
|
1.0
|
NE2
|
A:HIS215
|
2.2
|
55.5
|
1.0
|
NE2
|
A:HIS272
|
2.3
|
53.1
|
1.0
|
NE2
|
D:HIS268
|
2.3
|
50.0
|
1.0
|
O2
|
D:BCT403
|
2.3
|
79.4
|
1.0
|
O3
|
D:BCT403
|
2.3
|
73.7
|
1.0
|
C
|
D:BCT403
|
2.8
|
77.8
|
1.0
|
CE1
|
A:HIS272
|
3.0
|
48.4
|
1.0
|
CE1
|
A:HIS215
|
3.1
|
55.2
|
1.0
|
CE1
|
D:HIS268
|
3.1
|
49.5
|
1.0
|
CE1
|
D:HIS214
|
3.2
|
44.3
|
1.0
|
CD2
|
D:HIS214
|
3.2
|
48.1
|
1.0
|
CD2
|
A:HIS215
|
3.3
|
47.7
|
1.0
|
CD2
|
D:HIS268
|
3.4
|
52.8
|
1.0
|
CD2
|
A:HIS272
|
3.4
|
57.2
|
1.0
|
O1
|
D:BCT403
|
4.0
|
73.2
|
1.0
|
ND1
|
A:HIS272
|
4.2
|
49.2
|
1.0
|
ND1
|
A:HIS215
|
4.3
|
53.6
|
1.0
|
ND1
|
D:HIS268
|
4.3
|
52.2
|
1.0
|
ND1
|
D:HIS214
|
4.3
|
42.9
|
1.0
|
CG
|
D:HIS214
|
4.4
|
43.1
|
1.0
|
CG
|
A:HIS215
|
4.4
|
49.1
|
1.0
|
CG
|
D:HIS268
|
4.5
|
47.6
|
1.0
|
CG
|
A:HIS272
|
4.5
|
52.5
|
1.0
|
CG2
|
A:VAL219
|
4.5
|
51.7
|
1.0
|
OH
|
D:TYR244
|
4.8
|
70.2
|
1.0
|
CG2
|
D:VAL218
|
4.9
|
52.3
|
1.0
|
|
Iron binding site 2 out
of 4 in 9is4
Go back to
Iron Binding Sites List in 9is4
Iron binding site 2 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe101
b:156.7
occ:1.00
|
FE
|
F:HEM101
|
0.0
|
156.7
|
1.0
|
NC
|
F:HEM101
|
2.1
|
136.4
|
1.0
|
ND
|
F:HEM101
|
2.1
|
139.2
|
1.0
|
NA
|
F:HEM101
|
2.1
|
136.5
|
1.0
|
NB
|
F:HEM101
|
2.1
|
138.1
|
1.0
|
NE2
|
E:HIS23
|
2.1
|
141.8
|
1.0
|
NE2
|
F:HIS23
|
2.1
|
131.9
|
1.0
|
CE1
|
F:HIS23
|
2.5
|
129.3
|
1.0
|
CE1
|
E:HIS23
|
3.0
|
140.9
|
1.0
|
C4A
|
F:HEM101
|
3.0
|
134.9
|
1.0
|
C1D
|
F:HEM101
|
3.0
|
135.3
|
1.0
|
CD2
|
E:HIS23
|
3.0
|
141.9
|
1.0
|
C1A
|
F:HEM101
|
3.0
|
135.5
|
1.0
|
C4D
|
F:HEM101
|
3.0
|
136.5
|
1.0
|
C4C
|
F:HEM101
|
3.0
|
133.6
|
1.0
|
C1B
|
F:HEM101
|
3.0
|
135.9
|
1.0
|
C1C
|
F:HEM101
|
3.1
|
134.6
|
1.0
|
C4B
|
F:HEM101
|
3.1
|
135.2
|
1.0
|
CD2
|
F:HIS23
|
3.3
|
128.9
|
1.0
|
CHD
|
F:HEM101
|
3.4
|
133.2
|
1.0
|
CHB
|
F:HEM101
|
3.4
|
133.3
|
1.0
|
CHA
|
F:HEM101
|
3.4
|
135.3
|
1.0
|
CHC
|
F:HEM101
|
3.5
|
131.7
|
1.0
|
ND1
|
F:HIS23
|
3.7
|
126.9
|
1.0
|
ND1
|
E:HIS23
|
4.0
|
142.5
|
1.0
|
CG
|
F:HIS23
|
4.1
|
127.8
|
1.0
|
CG
|
E:HIS23
|
4.1
|
142.0
|
1.0
|
C3A
|
F:HEM101
|
4.2
|
136.7
|
1.0
|
C2A
|
F:HEM101
|
4.2
|
136.8
|
1.0
|
C2D
|
F:HEM101
|
4.2
|
134.5
|
1.0
|
C3D
|
F:HEM101
|
4.2
|
135.1
|
1.0
|
C2B
|
F:HEM101
|
4.2
|
136.7
|
1.0
|
C2C
|
F:HEM101
|
4.2
|
135.7
|
1.0
|
C3C
|
F:HEM101
|
4.2
|
135.3
|
1.0
|
C3B
|
F:HEM101
|
4.2
|
137.2
|
1.0
|
NE1
|
F:TRP19
|
4.9
|
127.7
|
1.0
|
|
Iron binding site 3 out
of 4 in 9is4
Go back to
Iron Binding Sites List in 9is4
Iron binding site 3 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe401
b:72.3
occ:1.00
|
NE2
|
d:HIS214
|
2.2
|
31.6
|
1.0
|
NE2
|
a:HIS215
|
2.2
|
43.9
|
1.0
|
NE2
|
d:HIS268
|
2.3
|
36.7
|
1.0
|
NE2
|
a:HIS272
|
2.3
|
38.9
|
1.0
|
O3
|
a:BCT409
|
2.3
|
51.5
|
1.0
|
O2
|
a:BCT409
|
2.3
|
58.5
|
1.0
|
C
|
a:BCT409
|
2.7
|
55.3
|
1.0
|
CE1
|
d:HIS268
|
3.1
|
35.9
|
1.0
|
CE1
|
a:HIS272
|
3.1
|
38.8
|
1.0
|
CE1
|
d:HIS214
|
3.1
|
23.6
|
1.0
|
CD2
|
a:HIS215
|
3.2
|
31.2
|
1.0
|
CE1
|
a:HIS215
|
3.3
|
39.5
|
1.0
|
CD2
|
d:HIS214
|
3.3
|
40.7
|
1.0
|
CD2
|
a:HIS272
|
3.4
|
36.0
|
1.0
|
CD2
|
d:HIS268
|
3.4
|
42.9
|
1.0
|
O1
|
a:BCT409
|
3.9
|
50.0
|
1.0
|
ND1
|
d:HIS214
|
4.3
|
24.6
|
1.0
|
ND1
|
d:HIS268
|
4.3
|
36.3
|
1.0
|
ND1
|
a:HIS272
|
4.3
|
39.7
|
1.0
|
CG
|
a:HIS215
|
4.3
|
29.0
|
1.0
|
ND1
|
a:HIS215
|
4.3
|
34.9
|
1.0
|
CG
|
d:HIS214
|
4.4
|
28.2
|
1.0
|
CG2
|
a:VAL219
|
4.5
|
41.3
|
1.0
|
CG
|
a:HIS272
|
4.5
|
34.6
|
1.0
|
CG
|
d:HIS268
|
4.5
|
35.8
|
1.0
|
CG2
|
d:VAL218
|
4.9
|
48.7
|
1.0
|
|
Iron binding site 4 out
of 4 in 9is4
Go back to
Iron Binding Sites List in 9is4
Iron binding site 4 out
of 4 in the Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of A TEF30-Associated Intermediate C2S-Type Psii- Lhcii Supercomplex From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
f:Fe101
b:125.6
occ:1.00
|
FE
|
f:HEM101
|
0.0
|
125.6
|
1.0
|
NC
|
f:HEM101
|
2.0
|
102.8
|
1.0
|
NA
|
f:HEM101
|
2.1
|
109.0
|
1.0
|
ND
|
f:HEM101
|
2.1
|
105.2
|
1.0
|
NB
|
f:HEM101
|
2.1
|
105.2
|
1.0
|
NE2
|
e:HIS23
|
2.1
|
119.6
|
1.0
|
NE2
|
f:HIS23
|
2.1
|
106.7
|
1.0
|
CE1
|
f:HIS23
|
2.3
|
103.5
|
1.0
|
CE1
|
e:HIS23
|
2.9
|
121.2
|
1.0
|
C1D
|
f:HEM101
|
3.0
|
101.4
|
1.0
|
C4A
|
f:HEM101
|
3.0
|
104.9
|
1.0
|
C4D
|
f:HEM101
|
3.1
|
104.7
|
1.0
|
C4C
|
f:HEM101
|
3.1
|
101.7
|
1.0
|
C1A
|
f:HEM101
|
3.1
|
106.7
|
1.0
|
C1B
|
f:HEM101
|
3.1
|
102.8
|
1.0
|
C1C
|
f:HEM101
|
3.1
|
101.9
|
1.0
|
C4B
|
f:HEM101
|
3.1
|
101.8
|
1.0
|
CD2
|
e:HIS23
|
3.1
|
120.1
|
1.0
|
CD2
|
f:HIS23
|
3.2
|
99.8
|
1.0
|
CHD
|
f:HEM101
|
3.4
|
101.3
|
1.0
|
CHB
|
f:HEM101
|
3.4
|
101.6
|
1.0
|
CHA
|
f:HEM101
|
3.4
|
105.0
|
1.0
|
ND1
|
f:HIS23
|
3.4
|
99.7
|
1.0
|
CHC
|
f:HEM101
|
3.4
|
100.8
|
1.0
|
CG
|
f:HIS23
|
3.9
|
97.2
|
1.0
|
ND1
|
e:HIS23
|
4.1
|
123.1
|
1.0
|
CG
|
e:HIS23
|
4.2
|
120.8
|
1.0
|
C2D
|
f:HEM101
|
4.2
|
101.1
|
1.0
|
C3D
|
f:HEM101
|
4.2
|
103.9
|
1.0
|
C3A
|
f:HEM101
|
4.2
|
106.5
|
1.0
|
C2A
|
f:HEM101
|
4.3
|
107.7
|
1.0
|
C3C
|
f:HEM101
|
4.3
|
100.7
|
1.0
|
C2B
|
f:HEM101
|
4.3
|
103.7
|
1.0
|
C2C
|
f:HEM101
|
4.3
|
100.7
|
1.0
|
C3B
|
f:HEM101
|
4.3
|
103.2
|
1.0
|
NE1
|
f:TRP19
|
4.5
|
102.8
|
1.0
|
CD1
|
f:TRP19
|
5.0
|
103.8
|
1.0
|
|
Reference:
Y.Wang,
C.Wang,
A.Li,
Z.Liu.
TEF30 Fulfills Versatile Functions in the Photosystem II Repair Process To Be Published.
Page generated: Fri Aug 8 06:53:51 2025
|