Iron in PDB 9ixl: Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei
Protein crystallography data
The structure of Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei, PDB code: 9ixl
was solved by
M.M.Qin,
Y.P.Jiang,
Z.Q.Cong,
P.X.Zhao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
55.96 /
2.10
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
100.64,
102.02,
223.86,
90,
90,
90
|
R / Rfree (%)
|
19.6 /
21.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei
(pdb code 9ixl). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei, PDB code: 9ixl:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 9ixl
Go back to
Iron Binding Sites List in 9ixl
Iron binding site 1 out
of 2 in the Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:38.7
occ:1.00
|
FE
|
B:HEM501
|
0.0
|
38.7
|
1.0
|
ND
|
B:HEM501
|
1.9
|
36.9
|
1.0
|
O
|
B:HOH647
|
2.0
|
39.4
|
0.3
|
NA
|
B:HEM501
|
2.0
|
37.6
|
1.0
|
NC
|
B:HEM501
|
2.1
|
40.0
|
1.0
|
NB
|
B:HEM501
|
2.1
|
38.1
|
1.0
|
SG
|
B:CYS422
|
2.6
|
37.3
|
1.0
|
C4D
|
B:HEM501
|
2.9
|
35.0
|
1.0
|
C1D
|
B:HEM501
|
2.9
|
36.2
|
1.0
|
C1A
|
B:HEM501
|
2.9
|
34.5
|
1.0
|
C4C
|
B:HEM501
|
3.0
|
38.1
|
1.0
|
C4A
|
B:HEM501
|
3.0
|
41.4
|
1.0
|
C1B
|
B:HEM501
|
3.1
|
34.3
|
1.0
|
C4B
|
B:HEM501
|
3.1
|
39.2
|
1.0
|
C1C
|
B:HEM501
|
3.1
|
40.5
|
1.0
|
CHA
|
B:HEM501
|
3.3
|
37.9
|
1.0
|
CHD
|
B:HEM501
|
3.4
|
38.9
|
1.0
|
CB
|
B:CYS422
|
3.4
|
32.8
|
1.0
|
CHB
|
B:HEM501
|
3.5
|
38.9
|
1.0
|
CHC
|
B:HEM501
|
3.5
|
46.5
|
1.0
|
CA
|
B:CYS422
|
4.0
|
38.7
|
1.0
|
O
|
B:GLY311
|
4.1
|
42.7
|
1.0
|
C3D
|
B:HEM501
|
4.1
|
40.6
|
1.0
|
C2D
|
B:HEM501
|
4.1
|
40.7
|
1.0
|
C2A
|
B:HEM501
|
4.1
|
31.6
|
1.0
|
C3A
|
B:HEM501
|
4.2
|
39.4
|
1.0
|
C3C
|
B:HEM501
|
4.2
|
40.0
|
1.0
|
C2C
|
B:HEM501
|
4.3
|
41.5
|
1.0
|
C2B
|
B:HEM501
|
4.3
|
39.7
|
1.0
|
C3B
|
B:HEM501
|
4.3
|
38.4
|
1.0
|
O2
|
B:DAO502
|
4.4
|
53.1
|
0.9
|
N
|
B:MET423
|
4.6
|
40.1
|
1.0
|
C
|
B:CYS422
|
4.6
|
42.7
|
1.0
|
C
|
B:GLY311
|
4.7
|
44.4
|
1.0
|
N
|
B:GLY424
|
4.7
|
36.7
|
1.0
|
C1
|
B:DAO502
|
4.8
|
54.0
|
0.9
|
CA
|
B:GLY311
|
4.8
|
42.7
|
1.0
|
|
Iron binding site 2 out
of 2 in 9ixl
Go back to
Iron Binding Sites List in 9ixl
Iron binding site 2 out
of 2 in the Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:38.8
occ:1.00
|
FE
|
A:HEM501
|
0.0
|
38.8
|
1.0
|
ND
|
A:HEM501
|
1.9
|
35.8
|
1.0
|
NA
|
A:HEM501
|
2.0
|
37.1
|
1.0
|
NC
|
A:HEM501
|
2.1
|
37.5
|
1.0
|
NB
|
A:HEM501
|
2.1
|
37.1
|
1.0
|
O
|
A:HOH611
|
2.5
|
37.5
|
0.5
|
SG
|
A:CYS422
|
2.7
|
40.9
|
1.0
|
C1D
|
A:HEM501
|
2.9
|
35.1
|
1.0
|
C4D
|
A:HEM501
|
2.9
|
35.1
|
1.0
|
C1A
|
A:HEM501
|
3.0
|
38.1
|
1.0
|
C4C
|
A:HEM501
|
3.0
|
36.1
|
1.0
|
C4A
|
A:HEM501
|
3.0
|
35.1
|
1.0
|
C1B
|
A:HEM501
|
3.1
|
37.3
|
1.0
|
C4B
|
A:HEM501
|
3.1
|
40.6
|
1.0
|
C1C
|
A:HEM501
|
3.1
|
36.8
|
1.0
|
CHA
|
A:HEM501
|
3.3
|
36.8
|
1.0
|
CHD
|
A:HEM501
|
3.4
|
34.6
|
1.0
|
CB
|
A:CYS422
|
3.4
|
30.6
|
1.0
|
CHB
|
A:HEM501
|
3.5
|
36.4
|
1.0
|
CHC
|
A:HEM501
|
3.5
|
37.4
|
1.0
|
O2
|
A:DAO502
|
3.9
|
55.2
|
1.0
|
O
|
A:GLY311
|
4.0
|
41.2
|
1.0
|
CA
|
A:CYS422
|
4.1
|
36.8
|
1.0
|
C2D
|
A:HEM501
|
4.1
|
36.5
|
1.0
|
C3D
|
A:HEM501
|
4.2
|
40.2
|
1.0
|
C2A
|
A:HEM501
|
4.2
|
38.6
|
1.0
|
C3A
|
A:HEM501
|
4.2
|
40.3
|
1.0
|
C3C
|
A:HEM501
|
4.3
|
39.8
|
1.0
|
C2C
|
A:HEM501
|
4.3
|
40.6
|
1.0
|
C2B
|
A:HEM501
|
4.4
|
37.4
|
1.0
|
C3B
|
A:HEM501
|
4.4
|
37.4
|
1.0
|
C1
|
A:DAO502
|
4.7
|
52.4
|
1.0
|
C
|
A:GLY311
|
4.7
|
41.2
|
1.0
|
C
|
A:CYS422
|
4.7
|
42.6
|
1.0
|
N
|
A:MET423
|
4.7
|
39.5
|
1.0
|
N
|
A:GLY424
|
4.8
|
39.5
|
1.0
|
CA
|
A:GLY311
|
4.8
|
43.5
|
1.0
|
|
Reference:
M.M.Qin,
Y.P.Jiang,
Z.Q.Cong,
P.X.Zhao.
Structure of the CYP153A Double Mutant L354T/V456G From Marinobacter Aquaeolei at 2.10 Angstroms Resolution To Be Published.
Page generated: Sat Aug 23 03:20:00 2025
|