Iron in PDB 9mly: Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil

All present enzymatic activity of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil:
1.18.6.1;

The structure of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil also contains other interesting chemical elements:

Molybdenum

(Mo)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil (pdb code 9mly). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil, PDB code: 9mly:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:32.6 occ:1.00 FE1 A:ICS502 0.0 32.6 1.0 S2A A:ICS502 2.3 17.3 1.0 S4A A:ICS502 2.3 17.9 1.0 S1A A:ICS502 2.3 14.8 1.0 SG A:CYS275 2.4 20.9 1.0 FE4 A:ICS502 2.6 27.7 1.0 FE2 A:ICS502 2.7 28.9 1.0 FE3 A:ICS502 2.7 29.4 1.0 CX A:ICS502 3.5 25.2 1.0 CB A:CYS275 3.5 22.0 1.0 CB A:LEU358 4.1 21.4 1.0 OG A:SER278 4.2 24.0 1.0 CB A:SER278 4.5 20.4 1.0 N A:LEU358 4.6 22.1 1.0 CE2 A:TYR229 4.7 20.6 1.0 CA A:CYS275 4.7 23.7 1.0 CD2 A:LEU358 4.8 23.3 1.0 S3A A:ICS502 4.8 17.8 1.0 S2B A:ICS502 4.8 16.7 1.0 S5A A:ICS502 4.8 20.2 1.0 FE6 A:ICS502 5.0 29.2 1.0

Iron binding site 2 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:28.9 occ:1.00 FE2 A:ICS502 0.0 28.9 1.0 CX A:ICS502 2.0 25.2 1.0 S2B A:ICS502 2.2 16.7 1.0 S2A A:ICS502 2.2 17.3 1.0 S1A A:ICS502 2.3 14.8 1.0 FE6 A:ICS502 2.6 29.2 1.0 FE4 A:ICS502 2.7 27.7 1.0 FE1 A:ICS502 2.7 32.6 1.0 FE3 A:ICS502 2.7 29.4 1.0 FE5 A:ICS502 3.7 27.4 1.0 FE7 A:ICS502 3.7 26.7 1.0 S4A A:ICS502 3.9 17.9 1.0 CE1 A:HIS195 4.0 17.9 1.0 S1B A:ICS502 4.2 20.6 1.0 S3B A:ICS502 4.2 24.9 1.0 CZ A:PHE381 4.2 22.5 1.0 O A:GLY356 4.3 25.9 1.0 NE2 A:HIS195 4.3 19.4 1.0 S3A A:ICS502 4.5 17.8 1.0 CG1 A:VAL70 4.6 20.7 1.0 CE1 A:PHE381 4.6 20.7 1.0 S5A A:ICS502 4.6 20.2 1.0 SG A:CYS275 4.8 20.9 1.0 CG2 A:VAL70 4.9 19.1 1.0

Iron binding site 3 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:29.4 occ:1.00 FE3 A:ICS502 0.0 29.4 1.0 CX A:ICS502 2.0 25.2 1.0 S5A A:ICS502 2.2 20.2 1.0 S4A A:ICS502 2.2 17.9 1.0 S2A A:ICS502 2.3 17.3 1.0 FE7 A:ICS502 2.6 26.7 1.0 FE4 A:ICS502 2.6 27.7 1.0 FE1 A:ICS502 2.7 32.6 1.0 FE2 A:ICS502 2.7 28.9 1.0 FE6 A:ICS502 3.7 29.2 1.0 FE5 A:ICS502 3.7 27.4 1.0 S1A A:ICS502 3.9 14.8 1.0 O A:HOH787 3.9 22.1 1.0 NH2 A:ARG96 4.0 19.2 1.0 S3B A:ICS502 4.2 24.9 1.0 S4B A:ICS502 4.2 20.2 1.0 CD2 A:TYR229 4.3 21.0 1.0 CE2 A:TYR229 4.4 20.6 1.0 S3A A:ICS502 4.4 17.8 1.0 S2B A:ICS502 4.5 16.7 1.0 NH2 A:ARG359 4.7 24.7 1.0 O A:HOH643 4.9 29.5 1.0 SG A:CYS275 4.9 20.9 1.0

Iron binding site 4 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:27.7 occ:1.00 FE4 A:ICS502 0.0 27.7 1.0 CX A:ICS502 2.0 25.2 1.0 S3A A:ICS502 2.2 17.8 1.0 S4A A:ICS502 2.3 17.9 1.0 S1A A:ICS502 2.3 14.8 1.0 FE3 A:ICS502 2.6 29.4 1.0 FE5 A:ICS502 2.6 27.4 1.0 FE1 A:ICS502 2.6 32.6 1.0 FE2 A:ICS502 2.7 28.9 1.0 O A:GLY356 3.4 25.9 1.0 FE7 A:ICS502 3.7 26.7 1.0 FE6 A:ICS502 3.7 29.2 1.0 S2A A:ICS502 3.8 17.3 1.0 N A:LEU358 4.0 22.1 1.0 S4B A:ICS502 4.3 20.2 1.0 S1B A:ICS502 4.3 20.6 1.0 CB A:LEU358 4.3 21.4 1.0 N A:ARG359 4.4 23.8 1.0 S5A A:ICS502 4.4 20.2 1.0 S2B A:ICS502 4.5 16.7 1.0 C A:GLY356 4.6 22.7 1.0 CA A:LEU358 4.7 21.4 1.0 NE A:ARG359 4.7 22.2 1.0 SG A:CYS275 4.8 20.9 1.0 C A:GLY357 5.0 21.5 1.0

Iron binding site 5 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:27.4 occ:1.00 FE5 A:ICS502 0.0 27.4 1.0 CX A:ICS502 2.0 25.2 1.0 S3A A:ICS502 2.2 17.8 1.0 S4B A:ICS502 2.2 20.2 1.0 S1B A:ICS502 2.3 20.6 1.0 FE7 A:ICS502 2.6 26.7 1.0 FE6 A:ICS502 2.6 29.2 1.0 FE4 A:ICS502 2.6 27.7 1.0 MO1 A:ICS502 2.7 35.4 1.0 FE2 A:ICS502 3.7 28.9 1.0 FE3 A:ICS502 3.7 29.4 1.0 O A:GLY356 3.7 25.9 1.0 S3B A:ICS502 3.8 24.9 1.0 ND1 A:HIS442 3.9 23.8 1.0 CE1 A:HIS442 4.3 21.0 1.0 S1A A:ICS502 4.3 14.8 1.0 S4A A:ICS502 4.4 17.9 1.0 S5A A:ICS502 4.4 20.2 1.0 S2B A:ICS502 4.4 16.7 1.0 CD A:ARG359 4.7 21.6 1.0 N A:GLY356 4.7 24.7 1.0 NE A:ARG359 4.7 22.2 1.0 O7 A:HCA501 4.8 28.7 1.0 C A:GLY356 4.8 22.7 1.0 CG A:HIS442 4.8 22.3 1.0 CZ A:ARG359 4.8 23.3 1.0 CG2 A:ILE355 4.9 23.3 1.0 NH1 A:ARG359 4.9 25.7 1.0

Iron binding site 6 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:29.2 occ:1.00 FE6 A:ICS502 0.0 29.2 1.0 CX A:ICS502 2.0 25.2 1.0 S2B A:ICS502 2.2 16.7 1.0 S3B A:ICS502 2.2 24.9 1.0 S1B A:ICS502 2.2 20.6 1.0 FE2 A:ICS502 2.6 28.9 1.0 FE7 A:ICS502 2.6 26.7 1.0 FE5 A:ICS502 2.6 27.4 1.0 MO1 A:ICS502 2.7 35.4 1.0 FE3 A:ICS502 3.7 29.4 1.0 FE4 A:ICS502 3.7 27.7 1.0 S4B A:ICS502 3.8 20.2 1.0 O7 A:HCA501 4.1 28.7 1.0 CZ A:PHE381 4.2 22.5 1.0 S2A A:ICS502 4.2 17.3 1.0 S1A A:ICS502 4.3 14.8 1.0 CG2 A:VAL70 4.3 19.1 1.0 S5A A:ICS502 4.5 20.2 1.0 S3A A:ICS502 4.5 17.8 1.0 O A:HOH697 4.6 28.2 1.0 O A:GLY356 4.6 25.9 1.0 CE2 A:PHE381 4.9 21.9 1.0 O5 A:HCA501 5.0 25.0 1.0 FE1 A:ICS502 5.0 32.6 1.0 ND1 A:HIS442 5.0 23.8 1.0

Iron binding site 7 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:26.7 occ:1.00 FE7 A:ICS502 0.0 26.7 1.0 CX A:ICS502 2.0 25.2 1.0 S5A A:ICS502 2.2 20.2 1.0 S4B A:ICS502 2.2 20.2 1.0 S3B A:ICS502 2.3 24.9 1.0 FE3 A:ICS502 2.6 29.4 1.0 FE6 A:ICS502 2.6 29.2 1.0 FE5 A:ICS502 2.6 27.4 1.0 MO1 A:ICS502 2.7 35.4 1.0 O A:HOH636 3.7 22.1 1.0 FE4 A:ICS502 3.7 27.7 1.0 FE2 A:ICS502 3.7 28.9 1.0 S1B A:ICS502 3.8 20.6 1.0 NE A:ARG96 3.9 22.3 1.0 NH2 A:ARG96 4.1 19.2 1.0 O5 A:HCA501 4.1 25.0 1.0 S2A A:ICS502 4.3 17.3 1.0 S4A A:ICS502 4.3 17.9 1.0 S2B A:ICS502 4.4 16.7 1.0 S3A A:ICS502 4.4 17.8 1.0 CZ A:ARG96 4.5 19.5 1.0 NH2 A:ARG359 4.6 24.7 1.0 CZ A:ARG359 4.6 23.3 1.0 O7 A:HCA501 4.7 28.7 1.0 NH1 A:ARG359 4.7 25.7 1.0 CD A:ARG96 5.0 21.1 1.0

Iron binding site 8 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:58.5 occ:1.00 OE1 D:GLU109 2.3 47.3 1.0 OD2 B:ASP357 2.4 33.8 1.0 OD2 B:ASP353 2.4 40.4 1.0 O D:ARG108 2.4 32.5 1.0 CG B:ASP353 3.1 34.7 1.0 OD1 B:ASP353 3.2 37.8 1.0 CG B:ASP357 3.3 32.6 1.0 CD D:GLU109 3.3 41.1 1.0 OD1 B:ASP357 3.5 36.6 1.0 C D:ARG108 3.5 24.3 1.0 CG D:GLU109 3.8 35.1 1.0 CA D:GLU109 4.3 26.5 1.0 CB D:ARG108 4.3 26.4 1.0 OE2 D:GLU109 4.3 39.4 1.0 N D:GLU109 4.3 23.6 1.0 CD1 C:PHE429 4.4 23.4 1.0 NZ C:LYS433 4.5 20.5 1.0 CA D:ARG108 4.6 26.6 1.0 CB B:ASP353 4.6 27.1 1.0 O B:ASP353 4.6 27.3 1.0 CB D:GLU109 4.6 30.5 1.0 CB B:ASP357 4.7 27.3 1.0 O D:PHE107 4.7 29.5 1.0 CE C:LYS433 4.7 19.9 1.0 O D:HOH702 4.8 38.6 1.0 CE1 C:PHE429 4.9 20.1 1.0 O D:HOH852 4.9 38.4 1.0 C B:ASP353 4.9 25.7 1.0 CG C:PHE429 4.9 22.8 1.0

Iron binding site 9 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe602 b:44.5 occ:1.00 FE1 B:CLF602 0.0 44.5 1.0 S3A B:CLF602 2.3 13.4 1.0 S2A B:CLF602 2.3 18.3 1.0 SG B:CYS95 2.3 21.5 1.0 S1 B:CLF602 2.5 33.6 1.0 FE2 B:CLF602 2.5 36.1 1.0 FE4 B:CLF602 2.6 43.9 1.0 FE3 B:CLF602 2.7 31.4 1.0 FE8 B:CLF602 3.0 39.1 1.0 N B:CYS95 3.2 18.9 1.0 CB B:CYS95 3.5 16.2 1.0 CA B:CYS95 3.6 15.6 1.0 S4A B:CLF602 3.7 20.7 1.0 C B:GLY94 3.9 16.5 1.0 S4B B:CLF602 4.1 19.1 1.0 O B:HOH901 4.2 15.6 1.0 CA B:GLY94 4.4 11.4 1.0 O B:GLY94 4.6 21.6 1.0 CB B:SER92 4.6 26.4 1.0 SG A:CYS154 4.7 23.4 1.0 N B:GLY94 4.7 18.1 1.0 SG A:CYS62 4.8 14.7 1.0 FE5 B:CLF602 4.9 45.4 1.0 O B:SER92 5.0 24.2 1.0

Iron binding site 10 out of 32 in the Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Azotobacter Vinelandii Reduced Mofep (C1 Symmetry) Obtained Using the Spt Labtech Chameleon of 5 Mm Sodium Dithionite Under Al'S Oil within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe602 b:36.1 occ:1.00 FE2 B:CLF602 0.0 36.1 1.0 S2A B:CLF602 2.3 18.3 1.0 S4A B:CLF602 2.3 20.7 1.0 SG A:CYS154 2.3 23.4 1.0 S1 B:CLF602 2.4 33.6 1.0 FE1 B:CLF602 2.5 44.5 1.0 FE4 B:CLF602 2.6 43.9 1.0 FE3 B:CLF602 2.8 31.4 1.0 CB A:CYS154 3.6 25.9 1.0 O B:HOH901 3.6 15.6 1.0 CA A:GLY185 3.7 20.8 1.0 S3A B:CLF602 3.8 13.4 1.0 N A:GLY185 4.0 24.2 1.0 SG B:CYS95 4.1 21.5 1.0 N A:CYS154 4.3 27.6 1.0 FE8 B:CLF602 4.4 39.1 1.0 CB B:SER92 4.5 26.4 1.0 CA A:CYS154 4.5 28.4 1.0 C A:GLY185 4.5 23.8 1.0 OG B:SER92 4.7 27.1 1.0 N A:PHE186 4.9 24.8 1.0 SG A:CYS62 4.9 14.7 1.0

B.D.Cook, S.M.Narehood, K.L.Mcguire, Y.Li, F.Akif Tezcan, M.A.Herzik Jr.. Preparation of Oxygen-Sensitive Proteins For High-Resolution Cryoem Structure Determination Using Blot-Free Vitrification. Nat Commun V. 16 3528 2025.
ISSN: ESSN 2041-1723
PubMed: 40229244
DOI: 10.1038/S41467-025-58243-1