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Iron in PDB 9msz: 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7

Protein crystallography data

The structure of 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7, PDB code: 9msz was solved by L.Zafreen, L.-S.Huang, P.Luemmen, E.A.Berry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.58 / 1.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.038, 59.682, 52.127, 90, 106.87, 90
R / Rfree (%) 13.1 / 15.1

Iron Binding Sites:

The binding sites of Iron atom in the 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7 (pdb code 9msz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7, PDB code: 9msz:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9msz

Go back to Iron Binding Sites List in 9msz
Iron binding site 1 out of 2 in the 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:6.6
occ:1.00
FE A:HEC201 0.0 6.6 1.0
NC A:HEC201 2.0 7.0 1.0
NE2 A:HIS18 2.0 6.4 1.0
NB A:HEC201 2.0 6.8 1.0
NA A:HEC201 2.0 7.0 1.0
ND A:HEC201 2.0 7.1 1.0
SD A:MET80 2.2 9.8 1.0
CE1 A:HIS18 2.9 6.2 1.0
C4C A:HEC201 3.0 7.0 1.0
C1B A:HEC201 3.0 6.6 1.0
C1D A:HEC201 3.0 7.5 1.0
C4A A:HEC201 3.0 6.9 1.0
C1C A:HEC201 3.0 7.0 1.0
C4B A:HEC201 3.0 6.9 1.0
C4D A:HEC201 3.0 7.1 1.0
C1A A:HEC201 3.0 6.8 1.0
CD2 A:HIS18 3.1 6.3 1.0
HE1 A:HIS18 3.1 7.5 1.0
HG3 A:MET80 3.2 12.5 1.0
HD2 A:HIS18 3.3 7.6 1.0
CG A:MET80 3.3 10.4 1.0
CE A:MET80 3.4 11.8 1.0
CHD A:HEC201 3.4 7.9 1.0
CHB A:HEC201 3.4 7.1 1.0
CHC A:HEC201 3.4 7.3 1.0
CHA A:HEC201 3.4 7.2 1.0
HE1 A:MET80 3.5 14.2 1.0
HE3 A:MET80 3.5 14.2 1.0
HB2 A:MET80 3.8 13.4 1.0
HH A:TYR67 3.9 15.9 1.0
ND1 A:HIS18 4.1 6.7 1.0
HG2 A:MET80 4.1 12.5 1.0
CB A:MET80 4.2 11.2 1.0
CG A:HIS18 4.2 6.8 1.0
HE2 A:MET80 4.2 14.2 1.0
C2D A:HEC201 4.2 8.0 1.0
C3C A:HEC201 4.3 8.2 1.0
C3B A:HEC201 4.3 6.9 1.0
C2B A:HEC201 4.3 7.0 1.0
C3D A:HEC201 4.3 7.4 1.0
C3A A:HEC201 4.3 7.1 1.0
C2A A:HEC201 4.3 7.4 1.0
C2C A:HEC201 4.3 8.0 1.0
HHD A:HEC201 4.4 9.5 1.0
HHB A:HEC201 4.4 8.5 1.0
HHC A:HEC201 4.4 8.8 1.0
HHA A:HEC201 4.4 8.7 1.0
HD2 A:PRO30 4.6 9.7 1.0
HA3 A:GLY29 4.6 10.3 1.0
OH A:TYR67 4.7 13.2 1.0
HE2 A:TYR67 4.7 12.5 1.0
HB2 A:CYS17 4.7 10.1 1.0
HB3 A:MET80 4.8 13.4 1.0
HD1 A:HIS18 4.9 8.1 1.0
HA A:MET80 4.9 14.2 1.0

Iron binding site 2 out of 2 in 9msz

Go back to Iron Binding Sites List in 9msz
Iron binding site 2 out of 2 in the 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 1.1 A Crystal Structure of Housefly Cytochrome C at pH 9.7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:8.4
occ:1.00
FE B:HEC201 0.0 8.4 1.0
NB B:HEC201 2.0 8.1 1.0
NC B:HEC201 2.0 9.3 1.0
ND B:HEC201 2.0 10.0 1.0
NA B:HEC201 2.0 9.0 1.0
NE2 B:HIS18 2.0 8.4 1.0
SD B:MET80 2.3 11.5 1.0
CE1 B:HIS18 3.0 8.3 1.0
C1B B:HEC201 3.0 7.9 1.0
C4C B:HEC201 3.0 9.7 1.0
C1D B:HEC201 3.0 9.9 1.0
C4A B:HEC201 3.0 8.8 1.0
C4B B:HEC201 3.0 7.7 1.0
C1C B:HEC201 3.1 8.8 1.0
C4D B:HEC201 3.1 10.2 1.0
C1A B:HEC201 3.1 9.2 1.0
CD2 B:HIS18 3.1 8.5 1.0
HE1 B:HIS18 3.1 10.0 1.0
HG3 B:MET80 3.3 14.8 1.0
HD2 B:HIS18 3.3 10.2 1.0
CHD B:HEC201 3.4 10.0 1.0
CHB B:HEC201 3.4 8.6 1.0
CE B:MET80 3.4 12.9 1.0
CHC B:HEC201 3.4 8.7 1.0
CHA B:HEC201 3.4 10.1 1.0
CG B:MET80 3.4 12.3 1.0
HE3 B:MET80 3.5 15.5 1.0
HE1 B:MET80 3.5 15.5 1.0
HB2 B:MET80 3.9 17.1 1.0
HH B:TYR67 4.0 20.3 1.0
ND1 B:HIS18 4.1 8.7 1.0
HG2 B:MET80 4.2 14.8 1.0
CG B:HIS18 4.2 8.7 1.0
C2D B:HEC201 4.2 11.9 1.0
C3C B:HEC201 4.2 10.2 1.0
C2B B:HEC201 4.2 8.1 1.0
CB B:MET80 4.3 14.2 1.0
C3D B:HEC201 4.3 11.5 1.0
C3B B:HEC201 4.3 8.1 1.0
HE2 B:MET80 4.3 15.5 1.0
C2A B:HEC201 4.3 9.8 1.0
C3A B:HEC201 4.3 9.4 1.0
C2C B:HEC201 4.3 10.1 1.0
HHD B:HEC201 4.4 12.0 1.0
HHC B:HEC201 4.4 10.4 1.0
HHB B:HEC201 4.4 10.4 1.0
HHA B:HEC201 4.4 12.2 1.0
HD2 B:PRO30 4.6 14.7 1.0
HA3 B:GLY29 4.6 15.0 1.0
HE2 B:TYR67 4.7 14.9 1.0
OH B:TYR67 4.8 16.9 1.0
HB2 B:CYS17 4.8 12.9 1.0
HD1 B:HIS18 4.9 10.5 1.0
HB3 B:MET80 4.9 17.1 1.0

Reference:

L.Zafreen, L.-S.Huang, P.Luemmen, E.A.Berry. Crystal Structure of Insect Cytochrome C at Different pH Values. To Be Published.
Page generated: Tue Feb 25 10:02:48 2025

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