Iron in PDB 9mt0: 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11
Protein crystallography data
The structure of 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11, PDB code: 9mt0
was solved by
L.Zafreen,
L.-S.Huang,
P.Luemmen,
E.A.Berry,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.81 /
1.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
33.876,
58.634,
51.674,
90,
106.77,
90
|
R / Rfree (%)
|
12.6 /
16.5
|
Iron Binding Sites:
The binding sites of Iron atom in the 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11
(pdb code 9mt0). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
1.2 A Crystal Structure of Housefly Cytochrome C at pH 11, PDB code: 9mt0:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 9mt0
Go back to
Iron Binding Sites List in 9mt0
Iron binding site 1 out
of 2 in the 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:11.5
occ:1.00
|
FE
|
A:HEC201
|
0.0
|
11.5
|
1.0
|
NC
|
A:HEC201
|
2.0
|
12.3
|
1.0
|
NA
|
A:HEC201
|
2.0
|
11.7
|
1.0
|
NE2
|
A:HIS18
|
2.0
|
10.5
|
1.0
|
NB
|
A:HEC201
|
2.1
|
10.8
|
1.0
|
ND
|
A:HEC201
|
2.1
|
11.3
|
1.0
|
SD
|
A:MET80
|
2.3
|
14.6
|
1.0
|
CE1
|
A:HIS18
|
3.0
|
10.9
|
1.0
|
C4C
|
A:HEC201
|
3.0
|
12.0
|
1.0
|
C4A
|
A:HEC201
|
3.0
|
10.8
|
1.0
|
C1B
|
A:HEC201
|
3.0
|
11.2
|
1.0
|
CD2
|
A:HIS18
|
3.0
|
10.0
|
1.0
|
C1C
|
A:HEC201
|
3.1
|
12.5
|
1.0
|
C1D
|
A:HEC201
|
3.1
|
11.4
|
1.0
|
C1A
|
A:HEC201
|
3.1
|
11.2
|
1.0
|
C4B
|
A:HEC201
|
3.1
|
11.4
|
1.0
|
C4D
|
A:HEC201
|
3.1
|
11.9
|
1.0
|
HE1
|
A:HIS18
|
3.2
|
13.1
|
1.0
|
HD2
|
A:HIS18
|
3.2
|
12.1
|
1.0
|
HG3
|
A:MET80
|
3.3
|
18.6
|
1.0
|
CE
|
A:MET80
|
3.4
|
15.1
|
1.0
|
CHB
|
A:HEC201
|
3.4
|
11.4
|
1.0
|
CHD
|
A:HEC201
|
3.4
|
13.2
|
1.0
|
CG
|
A:MET80
|
3.4
|
15.5
|
1.0
|
CHC
|
A:HEC201
|
3.4
|
12.6
|
1.0
|
HE1
|
A:MET80
|
3.5
|
18.1
|
1.0
|
CHA
|
A:HEC201
|
3.5
|
10.9
|
1.0
|
HE3
|
A:MET80
|
3.5
|
18.1
|
1.0
|
HB2
|
A:MET80
|
3.8
|
19.9
|
1.0
|
HH
|
A:TYR67
|
4.0
|
18.7
|
1.0
|
ND1
|
A:HIS18
|
4.1
|
11.8
|
1.0
|
HG2
|
A:MET80
|
4.2
|
18.6
|
1.0
|
CG
|
A:HIS18
|
4.2
|
11.3
|
1.0
|
CB
|
A:MET80
|
4.2
|
16.6
|
1.0
|
HE2
|
A:MET80
|
4.2
|
18.1
|
1.0
|
C3C
|
A:HEC201
|
4.2
|
14.0
|
1.0
|
C2B
|
A:HEC201
|
4.2
|
12.2
|
1.0
|
C3A
|
A:HEC201
|
4.3
|
11.4
|
1.0
|
C2C
|
A:HEC201
|
4.3
|
13.8
|
1.0
|
C2A
|
A:HEC201
|
4.3
|
11.4
|
1.0
|
C3B
|
A:HEC201
|
4.3
|
12.4
|
1.0
|
C2D
|
A:HEC201
|
4.3
|
12.6
|
1.0
|
C3D
|
A:HEC201
|
4.3
|
11.6
|
1.0
|
HHB
|
A:HEC201
|
4.4
|
13.7
|
1.0
|
HHD
|
A:HEC201
|
4.4
|
15.8
|
1.0
|
HHC
|
A:HEC201
|
4.4
|
15.2
|
1.0
|
HHA
|
A:HEC201
|
4.4
|
13.2
|
1.0
|
HD2
|
A:PRO30
|
4.6
|
15.8
|
1.0
|
HA3
|
A:GLY29
|
4.6
|
15.8
|
1.0
|
HE2
|
A:TYR67
|
4.7
|
16.9
|
1.0
|
HB2
|
A:CYS17
|
4.8
|
16.0
|
1.0
|
OH
|
A:TYR67
|
4.8
|
15.6
|
1.0
|
HB3
|
A:MET80
|
4.8
|
19.9
|
1.0
|
HD1
|
A:HIS18
|
4.9
|
14.1
|
1.0
|
HD21
|
A:LEU32
|
4.9
|
16.3
|
1.0
|
HA
|
A:MET80
|
5.0
|
20.1
|
1.0
|
|
Iron binding site 2 out
of 2 in 9mt0
Go back to
Iron Binding Sites List in 9mt0
Iron binding site 2 out
of 2 in the 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 1.2 A Crystal Structure of Housefly Cytochrome C at pH 11 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:15.7
occ:1.00
|
FE
|
B:HEC201
|
0.0
|
15.7
|
1.0
|
NC
|
B:HEC201
|
2.0
|
15.7
|
1.0
|
NA
|
B:HEC201
|
2.0
|
15.0
|
1.0
|
NE2
|
B:HIS18
|
2.0
|
15.4
|
1.0
|
ND
|
B:HEC201
|
2.0
|
16.6
|
1.0
|
NB
|
B:HEC201
|
2.0
|
14.6
|
1.0
|
SD
|
B:MET80
|
2.3
|
17.6
|
1.0
|
CE1
|
B:HIS18
|
2.9
|
16.4
|
1.0
|
C4C
|
B:HEC201
|
3.0
|
16.2
|
1.0
|
C1C
|
B:HEC201
|
3.0
|
15.5
|
1.0
|
C4A
|
B:HEC201
|
3.0
|
14.1
|
1.0
|
C1A
|
B:HEC201
|
3.0
|
15.4
|
1.0
|
C1D
|
B:HEC201
|
3.0
|
17.2
|
1.0
|
C1B
|
B:HEC201
|
3.1
|
14.8
|
1.0
|
CD2
|
B:HIS18
|
3.1
|
15.5
|
1.0
|
HE1
|
B:HIS18
|
3.1
|
19.7
|
1.0
|
C4D
|
B:HEC201
|
3.1
|
16.3
|
1.0
|
C4B
|
B:HEC201
|
3.1
|
14.0
|
1.0
|
HG3
|
B:MET80
|
3.3
|
22.9
|
1.0
|
HD2
|
B:HIS18
|
3.3
|
18.6
|
1.0
|
CE
|
B:MET80
|
3.4
|
17.2
|
1.0
|
CHC
|
B:HEC201
|
3.4
|
16.1
|
1.0
|
CHD
|
B:HEC201
|
3.4
|
16.5
|
1.0
|
CHA
|
B:HEC201
|
3.4
|
16.2
|
1.0
|
CHB
|
B:HEC201
|
3.4
|
13.6
|
1.0
|
CG
|
B:MET80
|
3.4
|
19.0
|
1.0
|
HE1
|
B:MET80
|
3.5
|
20.7
|
1.0
|
HE3
|
B:MET80
|
3.5
|
20.7
|
1.0
|
HB2
|
B:MET80
|
3.9
|
25.7
|
1.0
|
ND1
|
B:HIS18
|
4.1
|
16.0
|
1.0
|
HH
|
B:TYR67
|
4.2
|
21.0
|
1.0
|
CG
|
B:HIS18
|
4.2
|
15.4
|
1.0
|
HG2
|
B:MET80
|
4.2
|
22.9
|
1.0
|
HE2
|
B:MET80
|
4.2
|
20.7
|
1.0
|
C3A
|
B:HEC201
|
4.3
|
14.9
|
1.0
|
C2A
|
B:HEC201
|
4.3
|
14.5
|
1.0
|
C3C
|
B:HEC201
|
4.3
|
17.7
|
1.0
|
C2C
|
B:HEC201
|
4.3
|
16.3
|
1.0
|
CB
|
B:MET80
|
4.3
|
21.4
|
1.0
|
C2D
|
B:HEC201
|
4.3
|
19.6
|
1.0
|
C3D
|
B:HEC201
|
4.3
|
17.6
|
1.0
|
C2B
|
B:HEC201
|
4.3
|
14.3
|
1.0
|
C3B
|
B:HEC201
|
4.3
|
14.0
|
1.0
|
HHA
|
B:HEC201
|
4.4
|
19.4
|
1.0
|
HHD
|
B:HEC201
|
4.4
|
19.8
|
1.0
|
HHC
|
B:HEC201
|
4.4
|
19.4
|
1.0
|
HHB
|
B:HEC201
|
4.4
|
16.4
|
1.0
|
HD2
|
B:PRO30
|
4.6
|
22.4
|
1.0
|
HE2
|
B:TYR67
|
4.6
|
19.3
|
1.0
|
HA3
|
B:GLY29
|
4.6
|
22.1
|
1.0
|
HD1
|
B:HIS18
|
4.8
|
19.2
|
1.0
|
HB2
|
B:CYS17
|
4.8
|
23.9
|
1.0
|
HB3
|
B:MET80
|
4.9
|
25.7
|
1.0
|
OH
|
B:TYR67
|
4.9
|
17.5
|
1.0
|
HD21
|
B:LEU32
|
5.0
|
23.1
|
1.0
|
|
Reference:
L.Zafreen,
L.-S.Huang,
P.Luemmen,
E.A.Berry.
Crystal Structure of Insect Cytochrome C at Different pH Values. To Be Published.
Page generated: Tue Feb 25 10:02:49 2025
|