Iron in PDB 9nsv: Cryoem Structure of Ancestral Nitrogenase Mofe-Protein

The structure of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein also contains other interesting chemical elements:

Molybdenum

(Mo)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein (pdb code 9nsv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein, PDB code: 9nsv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:51.2 occ:1.00 FE1 A:ICS501 0.0 51.2 1.0 SG A:CYS275 2.2 36.6 1.0 S2A A:ICS501 2.3 30.0 1.0 S4A A:ICS501 2.3 30.2 1.0 S1A A:ICS501 2.3 32.2 1.0 FE4 A:ICS501 2.6 48.3 1.0 FE3 A:ICS501 2.7 45.5 1.0 FE2 A:ICS501 2.7 42.4 1.0 CB A:CYS275 3.2 32.6 1.0 CX A:ICS501 3.4 39.4 1.0 CB A:LEU358 3.9 34.1 1.0 CB A:SER278 4.1 29.2 1.0 CA A:CYS275 4.5 33.0 1.0 CE2 A:TYR229 4.5 26.9 1.0 N A:LEU358 4.6 36.1 1.0 N A:SER278 4.7 30.5 1.0 CD2 A:LEU358 4.7 33.1 1.0 S3A A:ICS501 4.8 32.3 1.0 S5A A:ICS501 4.8 34.0 1.0 S2B A:ICS501 4.8 31.9 1.0 CA A:LEU358 4.9 36.0 1.0 CG A:LEU358 5.0 36.2 1.0 FE7 A:ICS501 5.0 42.6 1.0 FE6 A:ICS501 5.0 45.5 1.0 FE5 A:ICS501 5.0 43.9 1.0

Iron binding site 2 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:42.4 occ:1.00 FE2 A:ICS501 0.0 42.4 1.0 CX A:ICS501 2.0 39.4 1.0 S2B A:ICS501 2.2 31.9 1.0 S2A A:ICS501 2.2 30.0 1.0 S1A A:ICS501 2.3 32.2 1.0 FE6 A:ICS501 2.6 45.5 1.0 FE4 A:ICS501 2.7 48.3 1.0 FE1 A:ICS501 2.7 51.2 1.0 FE3 A:ICS501 2.7 45.5 1.0 FE5 A:ICS501 3.7 43.9 1.0 FE7 A:ICS501 3.7 42.6 1.0 CE1 A:HIS195 3.8 25.9 1.0 S4A A:ICS501 3.9 30.2 1.0 NE2 A:HIS195 4.0 25.1 1.0 CZ A:PHE381 4.0 31.2 1.0 S1B A:ICS501 4.2 35.2 1.0 S3B A:ICS501 4.2 31.7 1.0 CE1 A:PHE381 4.2 31.2 1.0 CG1 A:VAL70 4.4 20.3 1.0 S3A A:ICS501 4.5 32.3 1.0 S5A A:ICS501 4.5 34.0 1.0 SG A:CYS275 4.6 36.6 1.0 N A:GLY357 4.8 35.8 1.0 CG2 A:VAL70 4.8 19.1 1.0 CB A:SER278 4.9 29.2 1.0 ND1 A:HIS195 4.9 25.0 1.0

Iron binding site 3 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:45.5 occ:1.00 FE3 A:ICS501 0.0 45.5 1.0 CX A:ICS501 2.0 39.4 1.0 S5A A:ICS501 2.2 34.0 1.0 S4A A:ICS501 2.2 30.2 1.0 S2A A:ICS501 2.3 30.0 1.0 FE7 A:ICS501 2.6 42.6 1.0 FE4 A:ICS501 2.6 48.3 1.0 FE1 A:ICS501 2.7 51.2 1.0 FE2 A:ICS501 2.7 42.4 1.0 FE6 A:ICS501 3.7 45.5 1.0 FE5 A:ICS501 3.7 43.9 1.0 O A:HOH807 3.8 30.5 1.0 S1A A:ICS501 3.9 32.2 1.0 CD2 A:TYR229 4.1 27.8 1.0 S4B A:ICS501 4.2 27.5 1.0 S3B A:ICS501 4.2 31.7 1.0 NH2 A:ARG96 4.3 25.2 1.0 CE2 A:TYR229 4.3 26.9 1.0 S2B A:ICS501 4.5 31.9 1.0 S3A A:ICS501 4.5 32.3 1.0 NE A:ARG359 4.6 33.0 1.0 SG A:CYS275 4.7 36.6 1.0 NH2 A:ARG359 5.0 28.0 1.0

Iron binding site 4 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:48.3 occ:1.00 FE4 A:ICS501 0.0 48.3 1.0 CX A:ICS501 2.0 39.4 1.0 S3A A:ICS501 2.2 32.3 1.0 S4A A:ICS501 2.3 30.2 1.0 S1A A:ICS501 2.3 32.2 1.0 FE5 A:ICS501 2.6 43.9 1.0 FE1 A:ICS501 2.6 51.2 1.0 FE3 A:ICS501 2.6 45.5 1.0 FE2 A:ICS501 2.7 42.4 1.0 N A:LEU358 3.7 36.1 1.0 FE7 A:ICS501 3.7 42.6 1.0 FE6 A:ICS501 3.7 45.5 1.0 S2A A:ICS501 3.8 30.0 1.0 CB A:LEU358 3.9 34.1 1.0 N A:GLY357 4.0 35.8 1.0 S4B A:ICS501 4.2 27.5 1.0 S1B A:ICS501 4.3 35.2 1.0 N A:ARG359 4.3 37.4 1.0 CA A:LEU358 4.3 36.0 1.0 S5A A:ICS501 4.5 34.0 1.0 S2B A:ICS501 4.5 31.9 1.0 CD A:ARG359 4.5 32.4 1.0 C A:GLY356 4.6 36.5 1.0 C A:GLY357 4.6 37.2 1.0 SG A:CYS275 4.6 36.6 1.0 CA A:GLY357 4.7 35.3 1.0 NE A:ARG359 4.7 33.0 1.0 CA A:GLY356 4.7 36.2 1.0 C A:LEU358 4.9 36.7 1.0 CG A:ARG359 4.9 33.2 1.0 N A:GLY356 5.0 37.3 1.0

Iron binding site 5 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:43.9 occ:1.00 FE5 A:ICS501 0.0 43.9 1.0 CX A:ICS501 2.0 39.4 1.0 S4B A:ICS501 2.3 27.5 1.0 S3A A:ICS501 2.3 32.3 1.0 S1B A:ICS501 2.3 35.2 1.0 FE4 A:ICS501 2.6 48.3 1.0 FE6 A:ICS501 2.6 45.5 1.0 FE7 A:ICS501 2.6 42.6 1.0 MO1 A:ICS501 2.7 49.4 1.0 FE2 A:ICS501 3.7 42.4 1.0 FE3 A:ICS501 3.7 45.5 1.0 S3B A:ICS501 3.9 31.7 1.0 N A:GLY356 3.9 37.3 1.0 CG1 A:VAL355 4.0 30.8 1.0 CA A:GLY356 4.1 36.2 1.0 ND1 A:HIS442 4.2 31.0 1.0 CD A:ARG359 4.2 32.4 1.0 S1A A:ICS501 4.3 32.2 1.0 S4A A:ICS501 4.3 30.2 1.0 S2B A:ICS501 4.5 31.9 1.0 S5A A:ICS501 4.5 34.0 1.0 CE1 A:HIS442 4.5 33.9 1.0 NE A:ARG359 4.6 33.0 1.0 C A:GLY356 4.8 36.5 1.0 N A:GLY357 4.8 35.8 1.0 CG A:HIS442 4.9 30.1 1.0 CZ A:PHE381 5.0 31.2 1.0 FE1 A:ICS501 5.0 51.2 1.0

Iron binding site 6 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:45.5 occ:1.00 FE6 A:ICS501 0.0 45.5 1.0 CX A:ICS501 2.0 39.4 1.0 S2B A:ICS501 2.2 31.9 1.0 S3B A:ICS501 2.2 31.7 1.0 S1B A:ICS501 2.2 35.2 1.0 FE2 A:ICS501 2.6 42.4 1.0 FE7 A:ICS501 2.6 42.6 1.0 FE5 A:ICS501 2.6 43.9 1.0 MO1 A:ICS501 2.7 49.4 1.0 FE3 A:ICS501 3.7 45.5 1.0 FE4 A:ICS501 3.7 48.3 1.0 S4B A:ICS501 3.8 27.5 1.0 O1 A:HCA502 3.9 34.4 1.0 CZ A:PHE381 4.0 31.2 1.0 S2A A:ICS501 4.2 30.0 1.0 S1A A:ICS501 4.3 32.2 1.0 CG2 A:VAL70 4.4 19.1 1.0 S5A A:ICS501 4.5 34.0 1.0 S3A A:ICS501 4.5 32.3 1.0 O7 A:HCA502 4.6 34.2 1.0 C1 A:HCA502 4.7 32.5 1.0 CE2 A:PHE381 4.8 30.7 1.0 C2 A:HCA502 4.9 30.3 1.0 CE1 A:PHE381 5.0 31.2 1.0 FE1 A:ICS501 5.0 51.2 1.0

Iron binding site 7 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:42.6 occ:1.00 FE7 A:ICS501 0.0 42.6 1.0 CX A:ICS501 2.0 39.4 1.0 S5A A:ICS501 2.2 34.0 1.0 S4B A:ICS501 2.2 27.5 1.0 S3B A:ICS501 2.3 31.7 1.0 FE3 A:ICS501 2.6 45.5 1.0 FE6 A:ICS501 2.6 45.5 1.0 FE5 A:ICS501 2.6 43.9 1.0 MO1 A:ICS501 2.7 49.4 1.0 O A:HOH684 3.5 25.0 1.0 FE2 A:ICS501 3.7 42.4 1.0 FE4 A:ICS501 3.7 48.3 1.0 S1B A:ICS501 3.8 35.2 1.0 NH2 A:ARG96 4.0 25.2 1.0 S2A A:ICS501 4.3 30.0 1.0 S4A A:ICS501 4.3 30.2 1.0 S2B A:ICS501 4.4 31.9 1.0 NE A:ARG96 4.4 27.2 1.0 CZ A:ARG359 4.5 29.1 1.0 O6 A:HCA502 4.5 31.7 1.0 NE A:ARG359 4.5 33.0 1.0 S3A A:ICS501 4.5 32.3 1.0 NH2 A:ARG359 4.7 28.0 1.0 CZ A:ARG96 4.7 26.4 1.0 NH1 A:ARG359 4.8 25.7 1.0 CD A:ARG359 4.9 32.4 1.0 FE1 A:ICS501 5.0 51.2 1.0

Iron binding site 8 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:24.6 occ:1.00 FE1 B:CLF601 0.0 24.6 1.0 SG A:CYS154 2.3 17.3 1.0 S2A B:CLF601 2.3 10.7 1.0 S3A B:CLF601 2.3 12.8 1.0 S1 B:CLF601 2.4 15.4 1.0 FE2 B:CLF601 2.5 28.2 1.0 FE4 B:CLF601 2.6 32.9 1.0 FE3 B:CLF601 2.8 30.2 1.0 CB A:CYS154 3.2 15.5 1.0 O B:HOH944 3.5 14.7 1.0 N A:CYS154 3.8 15.8 1.0 CA A:GLY185 3.8 17.1 1.0 S4A B:CLF601 3.8 9.1 1.0 N A:GLY185 4.0 17.5 1.0 SG B:CYS94 4.0 17.7 1.0 CA A:CYS154 4.0 16.1 1.0 CB B:SER91 4.4 19.1 1.0 FE8 B:CLF601 4.4 30.4 1.0 C A:GLY185 4.5 20.1 1.0 SG A:CYS88 4.6 16.0 1.0 O A:HOH772 4.6 24.0 1.0 FE5 B:CLF601 4.6 28.6 1.0 OG B:SER91 4.7 25.1 1.0 SG B:CYS152 4.8 20.0 1.0 N A:PHE186 4.8 20.2 1.0 FE6 B:CLF601 4.9 31.3 1.0 SG A:CYS62 4.9 18.8 1.0 C A:GLU153 4.9 15.5 1.0

Iron binding site 9 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:28.2 occ:1.00 FE2 B:CLF601 0.0 28.2 1.0 S4A B:CLF601 2.3 9.1 1.0 SG B:CYS94 2.3 17.7 1.0 S2A B:CLF601 2.3 10.7 1.0 S1 B:CLF601 2.5 15.4 1.0 FE1 B:CLF601 2.5 24.6 1.0 FE4 B:CLF601 2.6 32.9 1.0 FE3 B:CLF601 2.8 30.2 1.0 FE8 B:CLF601 3.0 30.4 1.0 N B:CYS94 3.1 15.8 1.0 CB B:CYS94 3.4 14.1 1.0 CA B:CYS94 3.4 12.6 1.0 C B:GLY93 3.7 14.4 1.0 S3A B:CLF601 3.8 12.8 1.0 FE5 B:CLF601 3.8 28.6 1.0 S4B B:CLF601 4.0 8.9 1.0 O B:HOH944 4.1 14.7 1.0 CA B:GLY93 4.3 15.3 1.0 O B:GLY93 4.3 15.2 1.0 SG A:CYS88 4.5 16.0 1.0 SG A:CYS154 4.5 17.3 1.0 FE6 B:CLF601 4.6 31.3 1.0 CB B:SER91 4.6 19.1 1.0 N B:GLY93 4.7 18.3 1.0 SG A:CYS62 4.7 18.8 1.0 O B:SER91 4.9 19.9 1.0 C B:CYS94 4.9 13.1 1.0

Iron binding site 10 out of 32 in the Cryoem Structure of Ancestral Nitrogenase Mofe-Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryoem Structure of Ancestral Nitrogenase Mofe-Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:30.2 occ:1.00 FE3 B:CLF601 0.0 30.2 1.0 SG A:CYS62 2.3 18.8 1.0 S4A B:CLF601 2.3 9.1 1.0 S2A B:CLF601 2.3 10.7 1.0 S3A B:CLF601 2.3 12.8 1.0 FE4 B:CLF601 2.7 32.9 1.0 FE2 B:CLF601 2.8 28.2 1.0 FE1 B:CLF601 2.8 24.6 1.0 CB A:CYS62 3.3 17.4 1.0 CA A:GLY185 3.7 17.1 1.0 CB A:TYR64 3.9 14.1 1.0 S1 B:CLF601 4.2 15.4 1.0 CA B:GLY93 4.2 15.3 1.0 N A:GLY185 4.4 17.5 1.0 CD2 A:TYR64 4.4 13.1 1.0 C B:GLY93 4.4 14.4 1.0 CG A:TYR64 4.5 13.4 1.0 O B:HOH913 4.5 17.7 1.0 N B:CYS94 4.6 15.8 1.0 CA A:CYS62 4.7 18.8 1.0 C A:GLY185 4.7 20.1 1.0 SG A:CYS154 4.7 17.3 1.0 N A:TYR64 4.8 15.9 1.0 O B:GLY93 4.8 15.2 1.0 SG A:CYS88 4.8 16.0 1.0 CA A:TYR64 4.9 14.8 1.0 CE2 B:TYR97 4.9 13.8 1.0 SG B:CYS94 5.0 17.7 1.0 O A:GLY185 5.0 26.8 1.0

R.A.Warmack, Y.Shen, R.A.Warmack. N/A N/A.