Iron in PDB 9qg1: Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Iron atom in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus (pdb code 9qg1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 48 binding sites of Iron where determined in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus, PDB code: 9qg1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:130.5 occ:1.00 SG A:CYS145 2.3 139.7 1.0 SG A:CYS157 2.5 144.7 1.0 SG A:CYS142 2.5 139.4 1.0 SG A:CYS160 2.5 134.1 1.0 CB A:CYS157 3.3 146.2 1.0 CB A:CYS145 3.3 126.3 1.0 CB A:CYS142 3.4 137.1 1.0 CB A:CYS160 3.5 132.3 1.0 N A:CYS160 3.8 138.5 1.0 N A:CYS145 4.1 127.2 1.0 CA A:CYS160 4.2 135.9 1.0 CA A:CYS145 4.2 125.1 1.0 CB A:VAL159 4.6 138.5 1.0 N A:GLY146 4.6 128.8 1.0 CA A:CYS157 4.7 144.3 1.0 C A:CYS145 4.8 128.1 1.0 C A:VAL159 4.8 140.2 1.0 CA A:CYS142 4.9 133.9 1.0 C A:CYS160 4.9 140.2 1.0 N A:GLY161 4.9 141.4 1.0 C A:ILE144 4.9 124.7 1.0 CG1 A:ILE144 5.0 122.3 1.0 CB A:ALA162 5.0 147.8 1.0

Iron binding site 2 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:148.0 occ:1.00 OE2 A:GLU80 2.0 129.6 1.0 OE1 A:GLU114 2.1 130.8 1.0 OE2 B:GLU52 2.1 127.7 1.0 ND1 A:HIS117 2.2 126.3 1.0 OE1 A:GLU80 2.4 129.3 1.0 FE A:FE203 2.4 142.5 1.0 CD A:GLU80 2.5 126.0 1.0 CE1 A:HIS117 2.9 123.1 1.0 CD B:GLU52 3.0 121.0 1.0 CD A:GLU114 3.0 127.3 1.0 OE2 A:GLU114 3.3 127.0 1.0 CG A:HIS117 3.3 126.6 1.0 OE1 B:GLU52 3.5 119.5 1.0 CB A:HIS117 3.8 127.7 1.0 CG A:GLU80 3.9 121.1 1.0 CG2 B:ILE48 4.0 124.6 1.0 CG B:GLU52 4.1 116.8 1.0 NE2 A:HIS117 4.1 121.0 1.0 OE1 A:GLU83 4.2 116.3 1.0 OH B:TYR26 4.2 129.7 1.0 CD2 A:HIS117 4.3 124.2 1.0 CG A:GLU114 4.4 122.0 1.0 CE2 B:TYR26 4.5 122.7 1.0 CB A:GLU114 4.8 117.7 1.0 CZ B:TYR26 4.9 125.3 1.0 CB A:GLU80 4.9 120.1 1.0

Iron binding site 3 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe203 b:142.5 occ:1.00 OE1 A:GLU83 1.9 116.3 1.0 FE A:FE202 2.4 148.0 1.0 OE2 A:GLU80 2.4 129.6 1.0 OE1 B:GLU52 2.6 119.5 1.0 OE2 A:GLU114 2.9 127.0 1.0 CD B:GLU52 3.0 121.0 1.0 OE2 B:GLU52 3.0 127.7 1.0 CD A:GLU80 3.0 126.0 1.0 CD A:GLU83 3.0 118.6 1.0 OE1 A:GLU80 3.1 129.3 1.0 OE1 A:GLU114 3.2 130.8 1.0 CD A:GLU114 3.4 127.3 1.0 OE2 A:GLU83 3.5 120.5 1.0 OH B:TYR26 3.8 129.7 1.0 CG B:GLU52 4.2 116.8 1.0 CG A:GLU83 4.3 113.1 1.0 CG A:GLU80 4.3 121.1 1.0 CB A:GLU83 4.5 112.0 1.0 ND1 A:HIS117 4.5 126.3 1.0 CE2 B:TYR26 4.7 122.7 1.0 CZ B:TYR26 4.7 125.3 1.0 OE2 B:GLU19 4.7 105.3 1.0 CA A:GLU80 4.8 117.4 1.0 CB B:ALA22 4.8 109.7 1.0 CG A:GLU114 4.8 122.0 1.0 OE1 B:GLU19 4.9 108.7 1.0

Iron binding site 4 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:142.0 occ:1.00 SG B:CYS145 2.3 148.7 1.0 SG B:CYS157 2.5 159.7 1.0 SG B:CYS160 2.5 160.6 1.0 CB B:CYS142 3.3 144.7 1.0 CB B:CYS145 3.4 137.1 1.0 CB B:CYS160 3.6 151.5 1.0 N B:CYS145 3.6 137.1 1.0 CG1 B:ILE144 3.6 137.6 1.0 CB B:CYS157 3.7 160.8 1.0 SG B:CYS142 3.7 151.0 1.0 CA B:CYS145 4.0 135.5 1.0 N B:CYS160 4.2 156.0 1.0 CA B:CYS160 4.5 154.3 1.0 C B:CYS145 4.5 138.1 1.0 C B:ILE144 4.5 133.0 1.0 CB B:ILE144 4.6 135.8 1.0 N B:ILE144 4.7 138.3 1.0 CA B:CYS142 4.7 141.6 1.0 CD1 B:ILE144 4.7 140.9 1.0 O B:CYS145 4.7 138.7 1.0 CA B:ILE144 4.8 134.8 1.0 CB B:ALA162 4.9 161.1 1.0

Iron binding site 5 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:119.8 occ:1.00 OE1 B:GLU114 2.0 117.8 1.0 OE2 B:GLU80 2.0 112.0 1.0 OE2 A:GLU52 2.1 114.1 1.0 ND1 B:HIS117 2.1 110.4 1.0 OE1 B:GLU80 2.5 111.2 1.0 CD B:GLU80 2.5 109.4 1.0 CE1 B:HIS117 2.9 109.2 1.0 CD A:GLU52 2.9 112.4 1.0 CD B:GLU114 3.2 117.2 1.0 CG B:HIS117 3.3 111.8 1.0 OE1 A:GLU52 3.3 113.1 1.0 CB B:HIS117 3.8 112.7 1.0 OE2 B:GLU114 3.8 116.3 1.0 CG B:GLU80 3.9 108.9 1.0 FE B:FE203 4.0 115.7 1.0 NE2 B:HIS117 4.1 107.7 1.0 OE1 B:GLU83 4.2 107.5 1.0 CG A:GLU52 4.2 110.7 1.0 CD2 B:HIS117 4.3 110.7 1.0 OH A:TYR26 4.3 117.5 1.0 CG B:GLU114 4.4 115.2 1.0 CG2 A:ILE48 4.4 109.1 1.0 CE2 A:TYR26 4.6 111.7 1.0 CB B:GLU114 4.7 110.4 1.0 CZ A:TYR26 4.9 114.5 1.0 CB B:GLU80 5.0 106.8 1.0

Iron binding site 6 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe203 b:115.7 occ:1.00 OE2 B:GLU114 2.1 116.3 1.0 OE2 A:GLU19 2.2 108.5 1.0 OE1 B:GLU83 2.2 107.5 1.0 OE2 B:GLU83 2.3 110.2 1.0 OE1 A:GLU52 2.4 113.1 1.0 CD B:GLU83 2.5 109.3 1.0 CD A:GLU19 3.0 107.1 1.0 CD B:GLU114 3.1 117.2 1.0 OE1 A:GLU19 3.3 110.7 1.0 OE1 B:GLU114 3.4 117.8 1.0 CD A:GLU52 3.6 112.4 1.0 CG B:GLU83 3.9 105.5 1.0 FE B:FE202 4.0 119.8 1.0 OE2 A:GLU52 4.1 114.1 1.0 CG A:GLU19 4.3 103.1 1.0 CG B:GLU114 4.4 115.2 1.0 CB B:GLU83 4.5 104.7 1.0 OE2 B:GLU80 4.5 112.0 1.0 CE2 B:TYR88 4.6 104.1 1.0 CG A:GLU52 4.7 110.7 1.0 OH B:TYR88 4.8 111.8 1.0 CD2 A:HIS55 4.8 111.8 1.0 OE1 B:GLU80 5.0 111.2 1.0

Iron binding site 7 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:79.0 occ:1.00 SG C:CYS160 2.2 82.5 1.0 SG C:CYS145 2.3 117.0 1.0 SG C:CYS157 2.4 103.2 1.0 SG C:CYS142 2.5 90.2 1.0 CB C:CYS160 3.3 89.3 1.0 CB C:CYS145 3.4 89.8 1.0 CB C:CYS157 3.5 93.0 1.0 CB C:CYS142 3.7 83.6 1.0 N C:CYS160 3.9 91.1 1.0 CA C:CYS160 4.2 92.0 1.0 CG1 C:ILE144 4.3 83.4 1.0 N C:CYS145 4.4 81.3 1.0 CA C:CYS145 4.5 79.6 1.0 N C:GLY161 4.6 90.0 1.0 C C:ILE144 4.7 83.9 1.0 CB C:VAL159 4.8 87.3 1.0 CB C:ALA162 4.8 85.8 1.0 CA C:CYS157 4.9 85.0 1.0 C C:CYS160 4.9 92.6 1.0 C C:VAL159 4.9 89.5 1.0 N C:ALA162 4.9 89.8 1.0

Iron binding site 8 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe202 b:100.3 occ:1.00 OE2 C:GLU114 2.1 90.0 1.0 OE2 D:GLU52 2.1 88.9 1.0 OE1 C:GLU114 2.2 89.0 1.0 CD C:GLU114 2.4 89.6 1.0 OE1 C:GLU83 2.5 81.5 1.0 OE1 D:GLU52 2.6 82.1 1.0 CD D:GLU52 2.7 81.5 1.0 OE2 C:GLU80 2.7 76.6 1.0 FE D:FE201 3.1 107.2 1.0 CD C:GLU83 3.2 76.8 1.0 OE2 C:GLU83 3.3 74.3 1.0 CD C:GLU80 3.5 80.0 1.0 OE1 C:GLU80 3.8 89.0 1.0 CG C:GLU114 3.9 87.2 1.0 CG D:GLU52 4.2 68.0 1.0 OE1 D:GLU19 4.2 80.9 1.0 ND1 C:HIS117 4.2 84.5 1.0 OE2 D:GLU19 4.5 72.1 1.0 CE1 C:HIS117 4.5 84.4 1.0 CG C:GLU83 4.5 77.7 1.0 CB C:GLU114 4.7 86.8 1.0 CD D:GLU19 4.7 76.1 1.0 CB C:GLU83 4.8 81.2 1.0 CG C:GLU80 4.8 76.6 1.0 ND1 D:HIS55 4.9 71.8 1.0

Iron binding site 9 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:107.2 occ:1.00 OE2 D:GLU52 2.1 88.9 1.0 OE2 C:GLU80 2.1 76.6 1.0 CE2 D:TYR26 2.5 71.4 1.0 CD D:GLU52 2.6 81.5 1.0 OH D:TYR26 2.9 79.1 1.0 FE C:FE202 3.1 100.3 1.0 CZ D:TYR26 3.1 72.4 1.0 CG D:GLU52 3.2 68.0 1.0 CD C:GLU80 3.3 80.0 1.0 CG2 D:ILE48 3.4 69.0 1.0 OE1 D:GLU52 3.4 82.1 1.0 CD2 D:TYR26 3.6 67.9 1.0 ND1 C:HIS117 3.6 84.5 1.0 CG C:GLU80 3.9 76.6 1.0 OE1 C:GLU114 4.1 89.0 1.0 CE1 C:HIS117 4.2 84.4 1.0 OE1 C:GLU80 4.3 89.0 1.0 OE1 C:GLU83 4.4 81.5 1.0 CE1 D:TYR26 4.5 71.3 1.0 O D:ILE48 4.6 77.9 1.0 CG C:HIS117 4.7 84.9 1.0 CB D:GLU52 4.7 62.9 1.0 OE2 C:GLU114 4.7 90.0 1.0 OH C:TYR121 4.7 82.1 1.0 CB D:ILE48 4.8 70.3 1.0 CD C:GLU114 4.9 89.6 1.0 CG D:TYR26 4.9 66.6 1.0 CE2 C:TYR121 5.0 80.1 1.0

Iron binding site 10 out of 48 in the Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Natively Purified Rubrerythrin 16-Mer From the Anaerobic Extremophile P. Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe202 b:73.8 occ:1.00 SG D:CYS145 2.3 99.9 1.0 SG D:CYS157 2.4 92.5 1.0 SG D:CYS160 2.4 91.2 1.0 SG D:CYS142 2.5 89.8 1.0 CB D:CYS145 3.5 79.0 1.0 CB D:CYS157 3.5 85.5 1.0 CB D:CYS160 3.6 88.7 1.0 CB D:CYS142 3.6 76.0 1.0 N D:CYS160 4.1 85.7 1.0 CG1 D:ILE144 4.2 77.8 1.0 N D:CYS145 4.2 67.0 1.0 CB D:ALA162 4.3 82.6 1.0 CA D:CYS160 4.4 87.9 1.0 CA D:CYS145 4.4 68.1 1.0 C D:ILE144 4.6 73.4 1.0 N D:ALA162 4.8 81.6 1.0 CB D:ILE144 4.8 80.4 1.0 CB D:TYR147 4.8 72.0 1.0 CA D:CYS157 4.9 77.1 1.0 CB D:VAL159 4.9 81.7 1.0 C D:CYS160 4.9 86.8 1.0 N D:ILE144 5.0 78.7 1.0 N D:GLY161 5.0 81.2 1.0 C D:CYS145 5.0 71.4 1.0

W.Song, J.Fiala, I.Skalidis, P.Albanese, C.Patinios, M.L.Chaillet, S.W.Kengen, R.A.Scheltema, S.C.Howes, A.J.Heck, F.Forster. Structure of An Oxygen-Induced Tubular Nanocompartment in Pyrococcus Furiosus Elife 2025.
ISSN: ESSN 2050-084X
DOI: 10.7554/ELIFE.106890.1