Iron in PDB 9r7j: Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus

The structure of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus, PDB code: 9r7j was solved by C.V.Romao, P.M.Matias, L.M.Saraiva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.55 / 2.73
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	158.219, 111.105, 122.634, 90, 93.93, 90
R / Rfree (%)	26.3 / 29.6

The structure of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Iron atom in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus (pdb code 9r7j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus, PDB code: 9r7j:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:47.9 occ:1.00 OE1 A:GLU215 1.9 47.8 1.0 NE2 A:HIS87 2.0 43.3 1.0 OE1 A:GLU136 2.1 54.2 1.0 O A:O303 2.3 57.4 1.0 NE2 A:HIS211 2.4 40.6 1.0 CE1 A:HIS87 2.9 42.1 1.0 FE A:FE302 2.9 49.8 0.7 CD A:GLU215 3.0 47.5 1.0 CD2 A:HIS87 3.1 40.2 1.0 CD A:GLU136 3.1 53.7 1.0 CE1 A:HIS211 3.3 48.2 1.0 OE2 A:GLU215 3.3 48.2 1.0 CD2 A:HIS211 3.5 40.9 1.0 OE2 A:GLU136 3.5 57.0 1.0 ND1 A:HIS87 4.0 44.1 1.0 CG A:HIS87 4.2 42.2 1.0 CG A:MET133 4.2 39.4 1.0 CG2 A:ILE82 4.2 43.2 1.0 CG A:GLU215 4.3 41.1 1.0 ND1 A:HIS211 4.4 49.5 1.0 CG A:GLU136 4.4 46.3 1.0 CG A:HIS211 4.5 41.6 1.0 CZ A:PHE141 4.6 46.8 1.0 CB A:GLU136 4.7 47.8 1.0 NE2 A:HIS132 4.7 53.7 1.0 CD2 A:HIS132 4.8 49.0 1.0 CA A:MET133 5.0 45.4 1.0

Iron binding site 2 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:49.8 occ:0.71 OE2 A:GLU136 2.0 57.0 1.0 O A:O303 2.0 57.4 1.0 NE2 A:HIS132 2.4 53.7 1.0 OE2 A:GLU215 2.4 48.2 1.0 NE2 A:HIS167 2.4 41.7 1.0 CD A:GLU136 2.8 53.7 1.0 OE1 A:GLU136 2.9 54.2 1.0 FE A:FE301 2.9 47.9 1.0 CD2 A:HIS132 3.1 49.0 1.0 CD A:GLU215 3.2 47.5 1.0 OE1 A:GLU215 3.3 47.8 1.0 CD2 A:HIS167 3.3 51.7 1.0 CE1 A:HIS132 3.4 55.5 1.0 CE1 A:HIS167 3.4 44.1 1.0 NE2 A:HIS211 4.0 40.6 1.0 CG A:GLU136 4.2 46.3 1.0 CG A:HIS132 4.3 50.6 1.0 ND1 A:HIS132 4.4 58.5 1.0 CG A:HIS167 4.5 51.3 1.0 ND1 A:HIS167 4.5 49.5 1.0 CD2 A:HIS211 4.5 40.9 1.0 CG A:GLU215 4.6 41.1 1.0 NE2 A:HIS87 4.8 43.3 1.0 CE1 A:HIS211 4.9 48.2 1.0 CD1 A:LEU163 5.0 51.6 1.0

Iron binding site 3 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:46.2 occ:1.00 NE2 B:HIS87 2.0 50.6 1.0 OE1 B:GLU215 2.0 51.5 1.0 NE2 B:HIS211 2.1 41.5 1.0 OE1 B:GLU136 2.4 56.3 1.0 O B:O303 2.7 57.8 1.0 CE1 B:HIS211 2.8 44.2 1.0 CD2 B:HIS87 2.8 49.5 1.0 FE B:FE302 2.9 57.2 0.8 CE1 B:HIS87 3.1 50.4 1.0 CD B:GLU215 3.1 52.1 1.0 CD2 B:HIS211 3.3 46.4 1.0 CD B:GLU136 3.5 57.3 1.0 OE2 B:GLU215 3.6 55.4 1.0 CG2 B:ILE82 4.0 47.7 1.0 OE2 B:GLU136 4.0 55.3 1.0 ND1 B:HIS211 4.0 47.1 1.0 CG B:HIS87 4.0 48.0 1.0 CZ B:PHE141 4.1 50.6 1.0 ND1 B:HIS87 4.1 48.7 1.0 CG B:HIS211 4.3 42.5 1.0 CE2 B:PHE141 4.4 48.5 1.0 CG B:GLU215 4.4 43.7 1.0 CG B:MET133 4.5 43.3 1.0 CG B:GLU136 4.8 52.1 1.0 CB B:GLU136 4.8 48.5 1.0 NE2 B:HIS132 4.9 55.3 1.0 SD B:MET133 4.9 46.8 1.0

Iron binding site 4 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:57.2 occ:0.82 O B:O303 2.0 57.8 1.0 NE2 B:HIS132 2.3 55.3 1.0 NE2 B:HIS167 2.5 47.6 1.0 OE2 B:GLU215 2.6 55.4 1.0 OE2 B:GLU136 2.6 55.3 1.0 OE1 B:GLU136 2.9 56.3 1.0 FE B:FE301 2.9 46.2 1.0 CD B:GLU136 3.0 57.3 1.0 CD2 B:HIS132 3.1 53.7 1.0 OE1 B:GLU215 3.1 51.5 1.0 CD B:GLU215 3.2 52.1 1.0 NE2 B:HIS211 3.2 41.5 1.0 CE1 B:HIS132 3.3 59.0 1.0 CE1 B:HIS167 3.4 46.4 1.0 CD2 B:HIS167 3.5 51.9 1.0 CE1 B:HIS211 3.9 44.2 1.0 CD2 B:HIS211 4.1 46.4 1.0 CG B:HIS132 4.2 51.8 1.0 ND1 B:HIS132 4.3 57.2 1.0 CE B:MET129 4.4 54.4 1.0 CG B:GLU136 4.5 52.1 1.0 ND1 B:HIS167 4.5 46.0 1.0 CG B:GLU215 4.6 43.7 1.0 CG B:HIS167 4.6 47.3 1.0 NE2 B:HIS87 4.6 50.6 1.0 ND1 B:HIS211 4.9 47.1 1.0

Iron binding site 5 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:55.1 occ:1.00 NE2 C:HIS211 2.2 45.2 1.0 NE2 C:HIS87 2.3 46.1 1.0 OE1 C:GLU136 2.4 51.8 1.0 O C:O303 2.5 57.3 1.0 OE1 C:GLU215 2.6 57.3 1.0 CE1 C:HIS211 2.6 45.4 1.0 FE C:FE302 2.8 57.3 1.0 CD C:GLU215 3.1 54.3 1.0 OE2 C:GLU215 3.2 58.7 1.0 CD2 C:HIS87 3.2 43.9 1.0 CD C:GLU136 3.2 52.7 1.0 CE1 C:HIS87 3.3 47.0 1.0 OE2 C:GLU136 3.3 56.9 1.0 CD2 C:HIS211 3.5 45.7 1.0 ND1 C:HIS211 3.9 45.7 1.0 NE2 C:HIS132 4.0 46.6 1.0 CG C:MET133 4.0 42.1 1.0 CD2 C:HIS132 4.3 46.8 1.0 CG C:HIS211 4.4 43.7 1.0 CG C:HIS87 4.4 42.5 1.0 ND1 C:HIS87 4.4 46.7 1.0 CG C:GLU215 4.4 44.9 1.0 CG2 C:ILE82 4.6 49.4 1.0 CG C:GLU136 4.6 48.4 1.0 CZ C:PHE141 4.6 50.4 1.0 NE2 C:HIS167 4.7 45.2 1.0

Iron binding site 6 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe302 b:57.3 occ:1.00 NE2 C:HIS167 2.0 45.2 1.0 NE2 C:HIS132 2.1 46.6 1.0 O C:O303 2.2 57.3 1.0 OE2 C:GLU215 2.3 58.7 1.0 OE2 C:GLU136 2.4 56.9 1.0 FE C:FE301 2.8 55.1 1.0 CE1 C:HIS167 2.8 45.2 1.0 CE1 C:HIS132 2.9 53.0 1.0 CD2 C:HIS132 3.2 46.8 1.0 CD2 C:HIS167 3.2 48.7 1.0 CD C:GLU136 3.2 52.7 1.0 CD C:GLU215 3.3 54.3 1.0 OE1 C:GLU136 3.5 51.8 1.0 OE1 C:GLU215 3.7 57.3 1.0 NE2 C:HIS211 3.8 45.2 1.0 ND1 C:HIS167 4.0 50.9 1.0 ND1 C:HIS132 4.1 56.3 1.0 CG C:HIS167 4.2 46.2 1.0 CG C:HIS132 4.2 46.6 1.0 CE1 C:HIS211 4.3 45.4 1.0 CG C:GLU215 4.4 44.9 1.0 CG C:GLU136 4.6 48.4 1.0 CD2 C:HIS211 4.6 45.7 1.0 CG2 C:VAL212 4.8 45.0 1.0 CB C:GLU215 4.9 37.3 1.0 NE2 C:HIS87 5.0 46.1 1.0

Iron binding site 7 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:51.5 occ:1.00 NE2 D:HIS211 2.0 51.0 1.0 NE2 D:HIS87 2.1 51.8 1.0 OE1 D:GLU215 2.1 53.0 1.0 OE1 D:GLU136 2.4 55.6 1.0 CE1 D:HIS211 2.6 52.7 1.0 O D:O303 2.6 54.9 1.0 CD2 D:HIS87 2.9 50.1 1.0 FE D:FE302 3.1 49.2 0.7 CE1 D:HIS87 3.1 53.2 1.0 CD D:GLU215 3.2 53.4 1.0 CD2 D:HIS211 3.2 49.2 1.0 CD D:GLU136 3.5 55.1 1.0 OE2 D:GLU215 3.6 52.5 1.0 ND1 D:HIS211 3.9 49.7 1.0 OE2 D:GLU136 3.9 56.1 1.0 CG D:HIS87 4.1 46.8 1.0 CG D:MET133 4.2 50.9 1.0 ND1 D:HIS87 4.2 46.3 1.0 CG D:HIS211 4.2 43.5 1.0 CZ D:PHE141 4.3 50.5 1.0 CG2 D:ILE82 4.4 48.5 1.0 CG D:GLU215 4.4 46.7 1.0 NE2 D:HIS132 4.5 51.7 1.0 CG D:GLU136 4.8 51.3 1.0 CE2 D:PHE141 4.8 49.9 1.0 CD2 D:HIS132 4.8 51.1 1.0 CB D:GLU136 4.9 50.9 1.0

Iron binding site 8 out of 8 in the Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe302 b:49.2 occ:0.72 NE2 D:HIS167 2.0 44.6 1.0 OE2 D:GLU215 2.3 52.5 1.0 NE2 D:HIS132 2.3 51.7 1.0 O D:O303 2.4 54.9 1.0 OE2 D:GLU136 2.4 56.1 1.0 CE1 D:HIS167 2.8 47.0 1.0 CD D:GLU215 3.0 53.4 1.0 CE1 D:HIS132 3.1 55.2 1.0 CD D:GLU136 3.1 55.1 1.0 FE D:FE301 3.1 51.5 1.0 OE1 D:GLU136 3.1 55.6 1.0 OE1 D:GLU215 3.2 53.0 1.0 CD2 D:HIS167 3.2 45.3 1.0 CD2 D:HIS132 3.4 51.1 1.0 NE2 D:HIS211 3.9 51.0 1.0 ND1 D:HIS167 4.0 44.1 1.0 CG D:HIS167 4.2 45.5 1.0 ND1 D:HIS132 4.3 55.5 1.0 CG D:GLU215 4.3 46.7 1.0 CG D:HIS132 4.5 50.6 1.0 CG D:GLU136 4.5 51.3 1.0 CD2 D:HIS211 4.5 49.2 1.0 CD1 D:LEU163 4.6 53.6 1.0 CE1 D:HIS211 4.6 52.7 1.0 CB D:GLU215 4.8 44.5 1.0

C.V.Romao, P.M.Matias, L.M.Saraiva. Repair of Iron Centre (Ric) Protein From Staphylococcus Aureus To Be Published.