Atomistry » Iron » PDB 7d0j-7dgk » 7d6v
Atomistry »
  Iron »
    PDB 7d0j-7dgk »
      7d6v »

Iron in PDB 7d6v: Mycobacterium Smegmatis SDH1 in Complex with UQ1

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Iron atom in the Mycobacterium Smegmatis SDH1 in Complex with UQ1 (pdb code 7d6v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the Mycobacterium Smegmatis SDH1 in Complex with UQ1, PDB code: 7d6v:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 1 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:18.2
occ:1.00
 FE1 B:FES301 0.0 18.2 1.0
S1 B:FES301 2.2 18.2 1.0
S2 B:FES301 2.2 18.2 1.0
SG B:CYS59 2.4 16.2 1.0
SG B:CYS54 2.6 18.0 1.0
FE2 B:FES301 3.1 18.2 1.0
N B:CYS54 3.6 18.0 1.0
CB B:CYS54 3.7 18.0 1.0
CB B:CYS59 3.7 16.2 1.0
O B:GLY57 3.7 19.2 1.0
N B:LYS55 3.9 21.9 1.0
N B:CYS59 3.9 16.2 1.0
CA B:CYS59 3.9 16.2 1.0
N B:GLY60 4.0 14.3 1.0
CA B:CYS54 4.1 18.0 1.0
N B:SER61 4.1 14.3 1.0
OG B:SER61 4.2 14.3 1.0
CB B:SER61 4.3 14.3 1.0
C B:GLY57 4.4 19.2 1.0
C B:CYS54 4.5 18.0 1.0
C B:CYS59 4.5 16.2 1.0
N B:ASN53 4.5 16.5 1.0
C B:ASN53 4.7 16.5 1.0
N B:GLY57 4.8 19.2 1.0
CA B:SER61 4.8 14.3 1.0
N B:ALA56 4.8 20.0 1.0
N B:CYS62 4.9 14.8 1.0
CA B:LYS55 4.9 21.9 1.0
SG B:CYS74 4.9 18.0 1.0
C B:LYS58 4.9 17.8 1.0
CA B:GLY57 4.9 19.2 1.0
CA B:ASN53 4.9 16.5 1.0
CB B:ASN53 5.0 16.5 1.0

Iron binding site 2 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 2 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:18.2
occ:1.00
 FE2 B:FES301 0.0 18.2 1.0
S1 B:FES301 2.2 18.2 1.0
S2 B:FES301 2.2 18.2 1.0
SG B:CYS62 2.5 14.8 1.0
SG B:CYS74 2.6 18.0 1.0
FE1 B:FES301 3.1 18.2 1.0
CB B:CYS74 3.2 18.0 1.0
CB B:CYS62 3.5 14.8 1.0
N B:GLY57 4.2 19.2 1.0
N B:CYS62 4.2 14.8 1.0
N B:CYS74 4.2 18.0 1.0
CA B:CYS74 4.3 18.0 1.0
CA B:CYS62 4.4 14.8 1.0
CA B:GLY57 4.5 19.2 1.0
N B:LYS55 4.5 21.9 1.0
CB B:LEU72 4.5 15.1 1.0
CD2 B:LEU72 4.6 15.1 1.0
CA B:LYS55 4.6 21.9 1.0
SG B:CYS54 4.7 18.0 1.0
CD1 B:LEU72 4.8 15.1 1.0
N B:ALA56 4.8 20.0 1.0
O B:GLY57 4.8 19.2 1.0
CG B:LEU72 4.9 15.1 1.0
C B:GLY57 4.9 19.2 1.0
CD2 B:LEU34 5.0 18.2 1.0
N B:SER61 5.0 14.3 1.0

Iron binding site 3 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 3 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:12.2
occ:1.00
 FE1 B:SF4302 0.0 12.2 1.0
S2 B:SF4302 2.1 12.2 1.0
S4 B:SF4302 2.1 12.2 1.0
S3 B:SF4302 2.1 12.2 1.0
SG B:CYS151 2.4 11.3 1.0
CB B:CYS151 3.0 11.3 1.0
FE3 B:SF4302 3.0 12.2 1.0
FE2 B:SF4302 3.0 12.2 1.0
FE4 B:SF4302 3.0 12.2 1.0
S1 B:SF4302 3.7 12.2 1.0
N B:CYS151 3.8 11.3 1.0
CA B:CYS151 4.0 11.3 1.0
CD1 B:ILE219 4.5 11.7 1.0
CB B:ARG172 4.5 12.0 1.0
N B:LEU150 4.6 11.6 1.0
CG B:ARG172 4.6 12.0 1.0
N B:PHE149 4.7 11.8 1.0
SG B:CYS148 4.8 12.0 1.0
CA B:PHE149 4.8 11.8 1.0
N B:GLN152 4.9 11.4 1.0
C B:PHE149 5.0 11.8 1.0
CA B:ARG172 5.0 12.0 1.0
C B:LEU150 5.0 11.6 1.0

Iron binding site 4 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 4 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:12.2
occ:1.00
 FE2 B:SF4302 0.0 12.2 1.0
S3 B:SF4302 2.1 12.2 1.0
S4 B:SF4302 2.1 12.2 1.0
S1 B:SF4302 2.1 12.2 1.0
SG B:CYS213 2.8 12.1 1.0
FE1 B:SF4302 3.0 12.2 1.0
FE4 B:SF4302 3.0 12.2 1.0
FE3 B:SF4302 3.0 12.2 1.0
CB B:CYS213 3.3 12.1 1.0
S2 B:SF4302 3.7 12.2 1.0
CA B:CYS213 3.8 12.1 1.0
CD B:PRO214 4.1 11.9 1.0
CD1 B:ILE217 4.2 12.2 1.0
CD1 B:ILE219 4.3 11.7 1.0
C B:CYS213 4.5 12.1 1.0
N B:PRO214 4.6 11.9 1.0
CG1 B:ILE217 4.7 12.2 1.0
CB B:GLU215 4.7 12.8 1.0
N B:GLU215 4.8 12.8 1.0
N B:CYS213 5.0 12.1 1.0
CB B:ILE217 5.0 12.2 1.0
CG B:GLU215 5.0 12.8 1.0

Iron binding site 5 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 5 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:12.2
occ:1.00
 FE3 B:SF4302 0.0 12.2 1.0
S4 B:SF4302 2.1 12.2 1.0
S2 B:SF4302 2.1 12.2 1.0
S1 B:SF4302 2.1 12.2 1.0
SG B:CYS145 2.4 12.5 1.0
FE1 B:SF4302 3.0 12.2 1.0
FE4 B:SF4302 3.0 12.2 1.0
FE2 B:SF4302 3.0 12.2 1.0
CB B:CYS145 3.2 12.5 1.0
O B:ILE146 3.3 13.3 1.0
S3 B:SF4302 3.7 12.2 1.0
CA B:CYS145 3.8 12.5 1.0
C B:CYS145 3.9 12.5 1.0
C B:ILE146 4.1 13.3 1.0
N B:ILE146 4.1 13.3 1.0
CG B:ARG172 4.3 12.0 1.0
O B:CYS145 4.5 12.5 1.0
CA B:GLU147 4.6 12.5 1.0
CE B:MET175 4.6 11.8 1.0
N B:CYS148 4.7 12.0 1.0
N B:GLU147 4.7 12.5 1.0
CA B:ILE146 4.8 13.3 1.0
CD1 B:ILE217 4.9 12.2 1.0

Iron binding site 6 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 6 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:12.2
occ:1.00
 FE4 B:SF4302 0.0 12.2 1.0
S2 B:SF4302 2.1 12.2 1.0
S1 B:SF4302 2.1 12.2 1.0
S3 B:SF4302 2.1 12.2 1.0
SG B:CYS148 2.4 12.0 1.0
FE1 B:SF4302 3.0 12.2 1.0
FE3 B:SF4302 3.0 12.2 1.0
FE2 B:SF4302 3.0 12.2 1.0
O B:ILE146 3.3 13.3 1.0
CB B:CYS148 3.4 12.0 1.0
N B:CYS148 3.7 12.0 1.0
S4 B:SF4302 3.7 12.2 1.0
N B:PHE149 3.8 11.8 1.0
CD B:PRO214 3.9 11.9 1.0
CA B:CYS148 4.0 12.0 1.0
N B:LEU150 4.2 11.6 1.0
C B:CYS148 4.3 12.0 1.0
C B:ILE146 4.5 13.3 1.0
CG B:PRO214 4.6 11.9 1.0
CA B:PHE149 4.7 11.8 1.0
CB B:LEU150 4.7 11.6 1.0
CG1 B:ILE146 4.8 13.3 1.0
C B:GLU147 4.8 12.5 1.0
N B:CYS151 4.9 11.3 1.0
C B:PHE149 4.9 11.8 1.0

Iron binding site 7 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 7 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe303

b:15.1
occ:1.00
 FE1 B:F3S303 0.0 15.1 1.0
S1 B:F3S303 2.2 15.1 1.0
S3 B:F3S303 2.3 15.1 1.0
S2 B:F3S303 2.3 15.1 1.0
FE3 B:F3S303 2.7 15.1 1.0
FE4 B:F3S303 2.8 15.1 1.0
SG B:CYS155 3.1 11.8 1.0
CB B:CYS155 3.5 11.8 1.0
CA B:CYS155 4.0 11.8 1.0
S4 B:F3S303 4.0 15.1 1.0
CB B:CYS209 4.1 15.0 1.0
CG B:PRO171 4.2 11.6 1.0
CD B:PRO171 4.3 11.6 1.0
SG B:CYS209 4.5 15.0 1.0
CB B:PRO171 4.6 11.6 1.0
N B:CYS209 4.7 15.0 1.0
N B:CYS155 4.9 11.8 1.0
CA B:CYS209 4.9 15.0 1.0
C B:CYS155 5.0 11.8 1.0

Iron binding site 8 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 8 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe303

b:15.1
occ:1.00
 FE3 B:F3S303 0.0 15.1 1.0
S1 B:F3S303 2.2 15.1 1.0
S4 B:F3S303 2.3 15.1 1.0
S3 B:F3S303 2.3 15.1 1.0
SG B:CYS209 2.6 15.0 1.0
FE1 B:F3S303 2.7 15.1 1.0
FE4 B:F3S303 2.7 15.1 1.0
CB B:CYS209 3.2 15.0 1.0
OG1 B:THR220 3.7 12.1 1.0
N B:CYS209 3.9 15.0 1.0
S2 B:F3S303 3.9 15.1 1.0
CD1 B:LEU224 3.9 11.2 1.0
CA B:LYS207 4.1 13.0 1.0
CA B:CYS209 4.2 15.0 1.0
N B:LYS207 4.2 13.0 1.0
C B:LYS207 4.4 13.0 1.0
N B:CYS208 4.5 14.7 1.0
SG B:CYS203 4.9 11.6 1.0
CB B:PRO171 4.9 11.6 1.0
N B:THR210 4.9 13.6 1.0
CB B:THR220 4.9 12.1 1.0

Iron binding site 9 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 9 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe303

b:15.1
occ:1.00
 FE4 B:F3S303 0.0 15.1 1.0
S4 B:F3S303 2.3 15.1 1.0
S2 B:F3S303 2.3 15.1 1.0
S3 B:F3S303 2.3 15.1 1.0
SG B:CYS203 2.4 11.6 1.0
FE3 B:F3S303 2.7 15.1 1.0
FE1 B:F3S303 2.8 15.1 1.0
O B:ASN204 3.3 12.6 1.0
S1 B:F3S303 3.8 15.1 1.0
CB B:CYS203 3.8 11.6 1.0
CD1 B:LEU224 4.0 11.2 1.0
C B:ASN204 4.4 12.6 1.0
CA B:CYS203 4.4 11.6 1.0
CA B:ILE205 4.6 12.1 1.0
C B:CYS203 4.8 11.6 1.0
N B:ASN204 4.9 12.6 1.0
SG B:CYS155 5.0 11.8 1.0

Iron binding site 10 out of 11 in 7d6v

Go back to Iron Binding Sites List in 7d6v
Iron binding site 10 out of 11 in the Mycobacterium Smegmatis SDH1 in Complex with UQ1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Mycobacterium Smegmatis SDH1 in Complex with UQ1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe303

b:12.8
occ:1.00
 FE1 C:FES303 0.0 12.8 1.0
S1 C:FES303 2.2 12.8 1.0
S2 C:FES303 2.2 12.8 1.0
SG C:CYS114 2.5 10.9 1.0
NE2 C:HIS240 2.6 11.8 1.0
FE2 C:FES303 2.7 12.8 1.0
CD2 C:HIS240 3.3 11.8 1.0
CB C:CYS114 3.3 10.9 1.0
CE1 C:HIS240 3.7 11.8 1.0
N C:TYR115 3.7 10.8 1.0
CA C:CYS114 3.7 10.9 1.0
OH C:TYR202 4.1 11.7 1.0
C C:CYS114 4.1 10.9 1.0
NE2 C:HIS155 4.1 11.2 1.0
N C:TYR116 4.3 11.6 1.0
CG C:HIS240 4.5 11.8 1.0
CZ C:TYR202 4.6 11.7 1.0
CE1 C:TYR202 4.6 11.7 1.0
CA C:CYS206 4.7 11.1 1.0
ND1 C:HIS240 4.7 11.8 1.0
CA C:TYR115 4.7 10.8 1.0
N C:HIS207 4.8 11.2 1.0
CB C:CYS206 4.8 11.1 1.0
CB C:TYR115 4.8 10.8 1.0
CE1 C:HIS155 4.9 11.2 1.0
SG C:CYS206 4.9 11.1 1.0
ND1 C:HIS207 4.9 11.2 1.0
CB C:TYR116 5.0 11.6 1.0

Reference:

X.Zhou, Y.Gao, Q.Wang, H.Gong, Z.Rao. Mycobacterium Smegmatis SDH1 in Complex with UQ1 Proc.Natl.Acad.Sci.Usa 2021.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.2022308118
Page generated: Wed Aug 6 21:34:28 2025

Last articles

Fe in 7LS4
Fe in 7LS3
Fe in 7LRV
Fe in 7LRR
Fe in 7LRL
Fe in 7LRB
Fe in 7LRA
Fe in 7LR5
Fe in 7LQ5
Fe in 7LKK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy