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Iron in PDB 7kim: Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor

Enzymatic activity of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor

All present enzymatic activity of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor:
2.7.7.6;

Other elements in 7kim:

The structure of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor (pdb code 7kim). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor, PDB code: 7kim:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7kim

Go back to Iron Binding Sites List in 7kim
Iron binding site 1 out of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Fe101

b:174.2
occ:1.00
 FE1 Z:SF4101 0.0 174.2 1.0
S2 Z:SF4101 2.2 174.2 1.0
SG Z:CYS43 2.3 158.7 1.0
S4 Z:SF4101 2.3 174.2 1.0
S3 Z:SF4101 2.3 174.2 1.0
FE4 Z:SF4101 2.7 174.2 1.0
FE3 Z:SF4101 2.7 174.2 1.0
FE2 Z:SF4101 2.7 174.2 1.0
N Z:GLY68 3.0 159.8 1.0
CA Z:GLY67 3.2 161.7 1.0
CB Z:CYS43 3.3 158.7 1.0
C Z:GLY67 3.3 161.7 1.0
N Z:GLY67 3.4 161.7 1.0
S1 Z:SF4101 3.9 174.2 1.0
CA Z:GLY68 4.1 159.8 1.0
SG Z:CYS46 4.2 154.3 1.0
O Z:GLY67 4.2 161.7 1.0
SG Z:CYS20 4.2 163.4 1.0
C Z:TRP66 4.5 159.3 1.0
CB Z:CYS46 4.5 154.3 1.0
SG Z:CYS52 4.6 154.4 1.0
CA Z:CYS43 4.6 158.7 1.0
CZ3 Z:TRP28 4.6 157.6 1.0
CH2 Z:TRP28 4.8 157.6 1.0
CB Z:CYS52 5.0 154.4 1.0

Iron binding site 2 out of 4 in 7kim

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Iron binding site 2 out of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Fe101

b:174.2
occ:1.00
 FE2 Z:SF4101 0.0 174.2 1.0
S1 Z:SF4101 2.3 174.2 1.0
SG Z:CYS46 2.3 154.3 1.0
S3 Z:SF4101 2.3 174.2 1.0
S4 Z:SF4101 2.3 174.2 1.0
SG Z:CYS20 2.4 163.4 1.0
FE3 Z:SF4101 2.7 174.2 1.0
FE1 Z:SF4101 2.7 174.2 1.0
FE4 Z:SF4101 2.7 174.2 1.0
SG Z:CYS43 3.4 158.7 1.0
CD1 Z:ILE48 3.5 147.7 1.0
CB Z:CYS46 3.6 154.3 1.0
S2 Z:SF4101 3.9 174.2 1.0
CD1 Z:LEU18 3.9 173.1 1.0
CG1 Z:ILE48 4.2 147.7 1.0
CB Z:CYS20 4.2 163.4 1.0
N Z:CYS20 4.6 163.4 1.0
SG Z:CYS52 4.6 154.4 1.0
CB Z:CYS43 4.7 158.7 1.0
CD Z:PRO19 4.7 164.0 1.0
CA Z:CYS20 4.8 163.4 1.0
CA Z:CYS46 4.9 154.3 1.0
CG Z:LEU18 4.9 173.1 1.0
CB Z:CYS52 4.9 154.4 1.0

Iron binding site 3 out of 4 in 7kim

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Iron binding site 3 out of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Fe101

b:174.2
occ:1.00
 FE3 Z:SF4101 0.0 174.2 1.0
S4 Z:SF4101 2.2 174.2 1.0
SG Z:CYS52 2.3 154.4 1.0
S2 Z:SF4101 2.3 174.2 1.0
S1 Z:SF4101 2.3 174.2 1.0
FE2 Z:SF4101 2.7 174.2 1.0
FE1 Z:SF4101 2.7 174.2 1.0
FE4 Z:SF4101 2.7 174.2 1.0
CB Z:CYS52 3.3 154.4 1.0
SG Z:CYS20 3.4 163.4 1.0
N Z:GLY67 3.8 161.7 1.0
S3 Z:SF4101 3.9 174.2 1.0
CA Z:GLY67 4.1 161.7 1.0
CD1 Z:ILE48 4.2 147.7 1.0
SG Z:CYS43 4.5 158.7 1.0
CA Z:CYS52 4.7 154.4 1.0
SG Z:CYS46 4.8 154.3 1.0
CG F:PRO517 4.9 157.5 1.0
CB Z:CYS20 4.9 163.4 1.0
C Z:TRP66 4.9 159.3 1.0

Iron binding site 4 out of 4 in 7kim

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Iron binding site 4 out of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Fe101

b:174.2
occ:1.00
 FE4 Z:SF4101 0.0 174.2 1.0
SG Z:CYS20 2.2 163.4 1.0
S3 Z:SF4101 2.2 174.2 1.0
S1 Z:SF4101 2.3 174.2 1.0
S2 Z:SF4101 2.3 174.2 1.0
FE1 Z:SF4101 2.7 174.2 1.0
FE2 Z:SF4101 2.7 174.2 1.0
FE3 Z:SF4101 2.7 174.2 1.0
SG Z:CYS43 2.9 158.7 1.0
CB Z:CYS20 3.1 163.4 1.0
CZ3 Z:TRP28 3.1 157.6 1.0
CH2 Z:TRP28 3.2 157.6 1.0
CA Z:CYS20 3.6 163.4 1.0
S4 Z:SF4101 3.9 174.2 1.0
N Z:CYS20 4.2 163.4 1.0
CE3 Z:TRP28 4.2 157.6 1.0
CZ2 Z:TRP28 4.3 157.6 1.0
CE1 F:HIS516 4.6 160.8 1.0
CB Z:CYS43 4.7 158.7 1.0
NE2 F:HIS516 4.7 160.8 1.0
SG Z:CYS46 4.8 154.3 1.0
SG Z:CYS52 4.9 154.4 1.0
N Z:GLY67 5.0 161.7 1.0
C Z:CYS20 5.0 163.4 1.0

Reference:

M.Lilic, S.A.Darst, E.A.Campbell. Mycobacterium Tuberculosis Wt Rnap Transcription Closed Promoter Complex with WHIB7 Transcription Factor To Be Published.
Page generated: Wed Aug 6 22:49:43 2025

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