Iron in PDB 1bbh: Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution
Protein crystallography data
The structure of Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution, PDB code: 1bbh
was solved by
Z.Ren,
D.E.Mcree,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
5.00 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.200,
56.700,
98.800,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.5 /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution
(pdb code 1bbh). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution, PDB code: 1bbh:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 1bbh
Go back to
Iron Binding Sites List in 1bbh
Iron binding site 1 out
of 2 in the Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe132
b:16.1
occ:1.00
|
FE
|
A:HEM132
|
0.0
|
16.1
|
1.0
|
NE2
|
A:HIS125
|
2.0
|
16.2
|
1.0
|
NA
|
A:HEM132
|
2.0
|
12.7
|
1.0
|
ND
|
A:HEM132
|
2.1
|
13.9
|
1.0
|
NB
|
A:HEM132
|
2.1
|
15.7
|
1.0
|
NC
|
A:HEM132
|
2.1
|
13.4
|
1.0
|
CE1
|
A:HIS125
|
3.0
|
18.1
|
1.0
|
CD2
|
A:HIS125
|
3.0
|
15.1
|
1.0
|
C4A
|
A:HEM132
|
3.0
|
14.1
|
1.0
|
C4D
|
A:HEM132
|
3.0
|
9.9
|
1.0
|
C1B
|
A:HEM132
|
3.0
|
17.6
|
1.0
|
C1A
|
A:HEM132
|
3.0
|
11.4
|
1.0
|
C1D
|
A:HEM132
|
3.1
|
11.3
|
1.0
|
C1C
|
A:HEM132
|
3.1
|
13.6
|
1.0
|
C4B
|
A:HEM132
|
3.1
|
12.4
|
1.0
|
C4C
|
A:HEM132
|
3.1
|
12.7
|
1.0
|
CHB
|
A:HEM132
|
3.3
|
14.1
|
1.0
|
CHA
|
A:HEM132
|
3.4
|
12.0
|
1.0
|
CHD
|
A:HEM132
|
3.4
|
9.1
|
1.0
|
CHC
|
A:HEM132
|
3.4
|
10.5
|
1.0
|
CD1
|
A:TYR16
|
3.5
|
11.6
|
1.0
|
CG
|
A:TYR16
|
3.8
|
10.2
|
1.0
|
CE1
|
A:TYR16
|
3.8
|
15.9
|
1.0
|
ND1
|
A:HIS125
|
4.1
|
21.2
|
1.0
|
CG
|
A:HIS125
|
4.2
|
19.7
|
1.0
|
C3A
|
A:HEM132
|
4.2
|
17.0
|
1.0
|
C3D
|
A:HEM132
|
4.2
|
13.2
|
1.0
|
C2A
|
A:HEM132
|
4.2
|
13.9
|
1.0
|
CD2
|
A:TYR16
|
4.2
|
16.5
|
1.0
|
C2B
|
A:HEM132
|
4.2
|
19.1
|
1.0
|
CZ
|
A:TYR16
|
4.3
|
12.8
|
1.0
|
C2D
|
A:HEM132
|
4.3
|
14.1
|
1.0
|
C2C
|
A:HEM132
|
4.3
|
13.8
|
1.0
|
C3B
|
A:HEM132
|
4.3
|
15.8
|
1.0
|
C3C
|
A:HEM132
|
4.3
|
13.7
|
1.0
|
CB
|
A:TYR16
|
4.4
|
15.3
|
1.0
|
CE2
|
A:TYR16
|
4.5
|
13.1
|
1.0
|
NH2
|
A:ARG129
|
4.7
|
23.1
|
1.0
|
|
Iron binding site 2 out
of 2 in 1bbh
Go back to
Iron Binding Sites List in 1bbh
Iron binding site 2 out
of 2 in the Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe132
b:19.6
occ:1.00
|
FE
|
B:HEM132
|
0.0
|
19.6
|
1.0
|
NE2
|
B:HIS125
|
2.0
|
27.4
|
1.0
|
NB
|
B:HEM132
|
2.0
|
14.7
|
1.0
|
ND
|
B:HEM132
|
2.0
|
16.1
|
1.0
|
NA
|
B:HEM132
|
2.1
|
18.2
|
1.0
|
NC
|
B:HEM132
|
2.1
|
17.9
|
1.0
|
CE1
|
B:HIS125
|
3.0
|
27.4
|
1.0
|
C4A
|
B:HEM132
|
3.0
|
14.1
|
1.0
|
C1B
|
B:HEM132
|
3.0
|
15.8
|
1.0
|
C1D
|
B:HEM132
|
3.0
|
18.3
|
1.0
|
C4D
|
B:HEM132
|
3.0
|
17.8
|
1.0
|
C4B
|
B:HEM132
|
3.1
|
20.9
|
1.0
|
C1A
|
B:HEM132
|
3.1
|
20.9
|
1.0
|
CD2
|
B:HIS125
|
3.1
|
21.6
|
1.0
|
C4C
|
B:HEM132
|
3.1
|
16.2
|
1.0
|
C1C
|
B:HEM132
|
3.1
|
17.5
|
1.0
|
CHB
|
B:HEM132
|
3.3
|
12.5
|
1.0
|
CHD
|
B:HEM132
|
3.4
|
16.8
|
1.0
|
CHA
|
B:HEM132
|
3.4
|
20.5
|
1.0
|
CHC
|
B:HEM132
|
3.4
|
20.7
|
1.0
|
CD1
|
B:TYR16
|
3.5
|
17.0
|
1.0
|
CG
|
B:TYR16
|
3.8
|
19.7
|
1.0
|
CE1
|
B:TYR16
|
3.8
|
14.4
|
1.0
|
ND1
|
B:HIS125
|
4.1
|
27.3
|
1.0
|
CZ
|
B:TYR16
|
4.2
|
18.1
|
1.0
|
CG
|
B:HIS125
|
4.2
|
24.4
|
1.0
|
CD2
|
B:TYR16
|
4.2
|
20.5
|
1.0
|
C2D
|
B:HEM132
|
4.2
|
20.2
|
1.0
|
C3A
|
B:HEM132
|
4.2
|
15.9
|
1.0
|
C3D
|
B:HEM132
|
4.2
|
20.4
|
1.0
|
C2B
|
B:HEM132
|
4.2
|
18.4
|
1.0
|
C3B
|
B:HEM132
|
4.3
|
22.5
|
1.0
|
C2A
|
B:HEM132
|
4.3
|
18.6
|
1.0
|
C3C
|
B:HEM132
|
4.3
|
18.9
|
1.0
|
C2C
|
B:HEM132
|
4.3
|
19.1
|
1.0
|
CB
|
B:TYR16
|
4.3
|
16.2
|
1.0
|
CE2
|
B:TYR16
|
4.4
|
15.6
|
1.0
|
NH1
|
B:ARG129
|
4.5
|
40.3
|
1.0
|
OH
|
B:TYR16
|
5.0
|
18.0
|
1.0
|
|
Reference:
Z.Ren,
T.Meyer,
D.E.Mcree.
Atomic Structure of A Cytochrome C' with An Unusual Ligand-Controlled Dimer Dissociation at 1.8 A Resolution. J.Mol.Biol. V. 234 433 1993.
ISSN: ISSN 0022-2836
PubMed: 8230224
DOI: 10.1006/JMBI.1993.1597
Page generated: Sat Aug 3 02:41:22 2024
|