Iron in PDB 1clf: Clostridium Pasteurianum Ferredoxin

The binding sites of Iron atom in the Clostridium Pasteurianum Ferredoxin (pdb code 1clf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Clostridium Pasteurianum Ferredoxin, PDB code: 1clf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:0.0 occ:1.00 FE1 A:SF456 0.0 0.0 1.0 S2 A:SF456 2.2 0.0 1.0 S4 A:SF456 2.2 0.0 1.0 S3 A:SF456 2.2 0.0 1.0 SG A:CYS8 2.2 0.0 1.0 FE4 A:SF456 2.6 0.0 1.0 FE3 A:SF456 2.7 0.0 1.0 FE2 A:SF456 2.7 0.0 1.0 O A:VAL9 3.2 0.0 1.0 CB A:CYS8 3.4 0.0 1.0 CA A:CYS8 3.7 0.0 1.0 S1 A:SF456 3.8 0.0 1.0 CG2 A:ILE4 4.0 0.0 1.0 N A:VAL9 4.2 0.0 1.0 CB A:PHE30 4.2 0.0 1.0 C A:VAL9 4.2 0.0 1.0 C A:CYS8 4.4 0.0 1.0 CD1 A:PHE30 4.5 0.0 1.0 SG A:CYS47 4.6 0.0 1.0 SG A:CYS14 4.6 0.0 1.0 CG A:PHE30 4.6 0.0 1.0 CB A:ALA51 4.6 0.0 1.0 SG A:CYS11 4.7 0.0 1.0 N A:CYS11 4.7 0.0 1.0 CA A:VAL9 4.9 0.0 1.0 N A:PHE30 5.0 0.0 1.0 N A:CYS8 5.0 0.0 1.0

Iron binding site 2 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:0.0 occ:1.00 FE2 A:SF456 0.0 0.0 1.0 SG A:CYS11 2.2 0.0 1.0 S1 A:SF456 2.2 0.0 1.0 S4 A:SF456 2.2 0.0 1.0 S3 A:SF456 2.2 0.0 1.0 FE4 A:SF456 2.6 0.0 1.0 FE3 A:SF456 2.6 0.0 1.0 FE1 A:SF456 2.7 0.0 1.0 CB A:CYS11 3.3 0.0 1.0 S2 A:SF456 3.7 0.0 1.0 O A:VAL9 3.7 0.0 1.0 CA A:CYS11 4.0 0.0 1.0 N A:CYS11 4.0 0.0 1.0 N A:GLY12 4.0 0.0 1.0 N A:ALA13 4.2 0.0 1.0 C A:CYS11 4.2 0.0 1.0 SG A:CYS47 4.5 0.0 1.0 SG A:CYS14 4.6 0.0 1.0 SG A:CYS8 4.7 0.0 1.0 CD A:PRO48 4.7 0.0 1.0 C A:ALA13 4.8 0.0 1.0 C A:GLY12 4.8 0.0 1.0 CA A:ALA13 4.9 0.0 1.0 O A:ALA13 4.9 0.0 1.0 CA A:GLY12 4.9 0.0 1.0 C A:VAL9 5.0 0.0 1.0

Iron binding site 3 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:0.0 occ:1.00 FE3 A:SF456 0.0 0.0 1.0 SG A:CYS14 2.2 0.0 1.0 S1 A:SF456 2.2 0.0 1.0 S2 A:SF456 2.2 0.0 1.0 S4 A:SF456 2.2 0.0 1.0 FE2 A:SF456 2.6 0.0 1.0 FE4 A:SF456 2.6 0.0 1.0 FE1 A:SF456 2.7 0.0 1.0 CB A:CYS14 3.2 0.0 1.0 S3 A:SF456 3.8 0.0 1.0 N A:CYS14 4.2 0.0 1.0 CA A:CYS14 4.2 0.0 1.0 C A:ALA13 4.4 0.0 1.0 CB A:PHE30 4.5 0.0 1.0 SG A:CYS11 4.5 0.0 1.0 SG A:CYS47 4.6 0.0 1.0 O A:ALA13 4.6 0.0 1.0 CG A:PHE30 4.6 0.0 1.0 SG A:CYS8 4.6 0.0 1.0 N A:ALA13 4.8 0.0 1.0 CD1 A:ILE4 4.8 0.0 1.0 CB A:CYS47 4.9 0.0 1.0 C A:GLY12 5.0 0.0 1.0

Iron binding site 4 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:0.0 occ:1.00 FE4 A:SF456 0.0 0.0 1.0 SG A:CYS47 2.1 0.0 1.0 S1 A:SF456 2.2 0.0 1.0 S2 A:SF456 2.2 0.0 1.0 S3 A:SF456 2.2 0.0 1.0 FE2 A:SF456 2.6 0.0 1.0 FE3 A:SF456 2.6 0.0 1.0 FE1 A:SF456 2.6 0.0 1.0 CB A:CYS47 3.2 0.0 1.0 S4 A:SF456 3.7 0.0 1.0 CA A:CYS47 3.8 0.0 1.0 CB A:ALA51 4.2 0.0 1.0 CD A:PRO48 4.3 0.0 1.0 SG A:CYS11 4.5 0.0 1.0 C A:CYS47 4.5 0.0 1.0 SG A:CYS14 4.6 0.0 1.0 N A:PRO48 4.7 0.0 1.0 SG A:CYS8 4.7 0.0 1.0 CD A:PRO52 4.7 0.0 1.0 CG2 A:VAL49 4.7 0.0 1.0 N A:ALA51 4.9 0.0 1.0 CA A:CYS8 5.0 0.0 1.0

Iron binding site 5 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:0.0 occ:1.00 FE1 A:SF457 0.0 0.0 1.0 SG A:CYS37 2.2 0.0 1.0 S2 A:SF457 2.2 0.0 1.0 S4 A:SF457 2.2 0.0 1.0 S3 A:SF457 2.2 0.0 1.0 FE3 A:SF457 2.6 0.0 1.0 FE4 A:SF457 2.6 0.0 1.0 FE2 A:SF457 2.7 0.0 1.0 O A:ILE38 3.2 0.0 1.0 CB A:CYS37 3.3 0.0 1.0 S1 A:SF457 3.7 0.0 1.0 CA A:CYS37 3.8 0.0 1.0 N A:ILE38 4.0 0.0 1.0 C A:ILE38 4.1 0.0 1.0 C A:CYS37 4.3 0.0 1.0 SG A:CYS43 4.6 0.0 1.0 SG A:CYS18 4.6 0.0 1.0 SG A:CYS40 4.7 0.0 1.0 N A:CYS40 4.7 0.0 1.0 CA A:ILE38 4.8 0.0 1.0 N A:ASP39 4.9 0.0 1.0 CG2 A:ILE32 5.0 0.0 1.0

Iron binding site 6 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:0.0 occ:1.00 FE2 A:SF457 0.0 0.0 1.0 SG A:CYS40 2.2 0.0 1.0 S1 A:SF457 2.2 0.0 1.0 S4 A:SF457 2.2 0.0 1.0 S3 A:SF457 2.2 0.0 1.0 FE4 A:SF457 2.6 0.0 1.0 FE3 A:SF457 2.6 0.0 1.0 FE1 A:SF457 2.7 0.0 1.0 CB A:CYS40 3.3 0.0 1.0 O A:ASN42 3.5 0.0 1.0 O A:ILE38 3.6 0.0 1.0 S2 A:SF457 3.8 0.0 1.0 N A:CYS40 3.9 0.0 1.0 CA A:CYS40 4.0 0.0 1.0 C A:ASN42 4.1 0.0 1.0 N A:GLY41 4.2 0.0 1.0 C A:CYS40 4.3 0.0 1.0 CD A:PRO19 4.3 0.0 1.0 N A:ASN42 4.4 0.0 1.0 CB A:ASN42 4.5 0.0 1.0 SG A:CYS18 4.5 0.0 1.0 CA A:ASN42 4.6 0.0 1.0 SG A:CYS43 4.6 0.0 1.0 SG A:CYS37 4.6 0.0 1.0 C A:ILE38 4.8 0.0 1.0 N A:CYS43 4.9 0.0 1.0 C A:GLY41 5.0 0.0 1.0

Iron binding site 7 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:0.0 occ:1.00 FE3 A:SF457 0.0 0.0 1.0 SG A:CYS43 2.2 0.0 1.0 S1 A:SF457 2.2 0.0 1.0 S2 A:SF457 2.2 0.0 1.0 S4 A:SF457 2.2 0.0 1.0 FE1 A:SF457 2.6 0.0 1.0 FE4 A:SF457 2.6 0.0 1.0 FE2 A:SF457 2.6 0.0 1.0 O A:ASN42 3.0 0.0 1.0 CB A:CYS43 3.2 0.0 1.0 C A:ASN42 3.7 0.0 1.0 S3 A:SF457 3.8 0.0 1.0 N A:CYS43 4.1 0.0 1.0 CA A:CYS43 4.1 0.0 1.0 SG A:CYS37 4.5 0.0 1.0 SG A:CYS40 4.6 0.0 1.0 SG A:CYS18 4.6 0.0 1.0 CD1 A:ILE23 4.6 0.0 1.0 N A:ALA44 4.8 0.0 1.0 CB A:CYS18 4.8 0.0 1.0 C A:CYS43 4.9 0.0 1.0 CA A:ASN42 5.0 0.0 1.0

Iron binding site 8 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Clostridium Pasteurianum Ferredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:0.0 occ:1.00 FE4 A:SF457 0.0 0.0 1.0 SG A:CYS18 2.2 0.0 1.0 S1 A:SF457 2.2 0.0 1.0 S3 A:SF457 2.2 0.0 1.0 S2 A:SF457 2.2 0.0 1.0 FE2 A:SF457 2.6 0.0 1.0 FE3 A:SF457 2.6 0.0 1.0 FE1 A:SF457 2.6 0.0 1.0 CB A:CYS18 3.2 0.0 1.0 CA A:CYS18 3.7 0.0 1.0 S4 A:SF457 3.8 0.0 1.0 CD A:PRO19 4.0 0.0 1.0 CG1 A:VAL20 4.2 0.0 1.0 C A:CYS18 4.4 0.0 1.0 N A:PRO19 4.5 0.0 1.0 SG A:CYS40 4.5 0.0 1.0 SG A:CYS43 4.6 0.0 1.0 SG A:CYS37 4.6 0.0 1.0 CB A:ALA22 4.7 0.0 1.0 O A:ASN42 4.9 0.0 1.0 N A:VAL20 4.9 0.0 1.0 CB A:CYS43 5.0 0.0 1.0 N A:CYS18 5.0 0.0 1.0 CD1 A:ILE23 5.0 0.0 1.0 O A:ILE38 5.0 0.0 1.0

I.Bertini, A.Donaire, B.A.Feinberg, C.Luchinat, M.Piccioli, H.Yuan. Solution Structure of the Oxidized 2[4FE-4S] Ferredoxin From Clostridium Pasteurianum. Eur.J.Biochem. V. 232 192 1995.
ISSN: ISSN 0014-2956
PubMed: 7556151
DOI: 10.1111/J.1432-1033.1995.TB20799.X