Iron in PDB 1cmy: The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin
Protein crystallography data
The structure of The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin, PDB code: 1cmy
was solved by
F.R.Smith,
E.E.Lattman,
C.W.Carter Junior,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
3.00
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.100,
93.100,
144.600,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
n/a /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin
(pdb code 1cmy). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin, PDB code: 1cmy:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1cmy
Go back to
Iron Binding Sites List in 1cmy
Iron binding site 1 out
of 4 in the The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:15.0
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
15.0
|
1.0
|
NC
|
A:HEM142
|
2.0
|
15.0
|
1.0
|
NB
|
A:HEM142
|
2.0
|
15.0
|
1.0
|
ND
|
A:HEM142
|
2.0
|
15.0
|
1.0
|
NA
|
A:HEM142
|
2.0
|
15.0
|
1.0
|
NE2
|
A:HIS87
|
2.0
|
15.0
|
1.0
|
CE1
|
A:HIS87
|
2.8
|
15.0
|
1.0
|
C1D
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C4C
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C1C
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C1B
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C4A
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C4B
|
A:HEM142
|
3.0
|
15.0
|
1.0
|
C1A
|
A:HEM142
|
3.1
|
15.0
|
1.0
|
CD2
|
A:HIS87
|
3.2
|
15.0
|
1.0
|
CHB
|
A:HEM142
|
3.4
|
15.0
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
15.0
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
15.0
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
15.0
|
1.0
|
ND1
|
A:HIS87
|
4.0
|
15.0
|
1.0
|
CG
|
A:HIS87
|
4.2
|
15.0
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
15.0
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
15.0
|
1.0
|
CG2
|
A:VAL62
|
4.4
|
15.0
|
1.0
|
CE1
|
A:HIS58
|
4.8
|
15.0
|
1.0
|
|
Iron binding site 2 out
of 4 in 1cmy
Go back to
Iron Binding Sites List in 1cmy
Iron binding site 2 out
of 4 in the The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:15.0
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
15.0
|
1.0
|
NB
|
B:HEM147
|
2.0
|
15.0
|
1.0
|
NA
|
B:HEM147
|
2.0
|
15.0
|
1.0
|
NC
|
B:HEM147
|
2.0
|
15.0
|
1.0
|
ND
|
B:HEM147
|
2.0
|
15.0
|
1.0
|
NE2
|
B:HIS92
|
2.0
|
15.0
|
1.0
|
CE1
|
B:HIS92
|
3.0
|
15.0
|
1.0
|
C1B
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C1A
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C4A
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C4D
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C1D
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
CD2
|
B:HIS92
|
3.0
|
15.0
|
1.0
|
C1C
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
15.0
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
15.0
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
15.0
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
15.0
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
15.0
|
1.0
|
ND1
|
B:HIS92
|
4.1
|
15.0
|
1.0
|
CG
|
B:HIS92
|
4.2
|
15.0
|
1.0
|
C3A
|
B:HEM147
|
4.2
|
15.0
|
1.0
|
C2B
|
B:HEM147
|
4.2
|
15.0
|
1.0
|
C3B
|
B:HEM147
|
4.2
|
15.0
|
1.0
|
C2D
|
B:HEM147
|
4.2
|
15.0
|
1.0
|
C3D
|
B:HEM147
|
4.2
|
15.0
|
1.0
|
C2A
|
B:HEM147
|
4.2
|
15.0
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
15.0
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
15.0
|
1.0
|
NE2
|
B:HIS63
|
4.3
|
15.0
|
1.0
|
CG2
|
B:VAL67
|
4.7
|
15.0
|
1.0
|
|
Iron binding site 3 out
of 4 in 1cmy
Go back to
Iron Binding Sites List in 1cmy
Iron binding site 3 out
of 4 in the The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:15.0
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
15.0
|
1.0
|
ND
|
C:HEM142
|
2.0
|
15.0
|
1.0
|
NC
|
C:HEM142
|
2.0
|
15.0
|
1.0
|
NB
|
C:HEM142
|
2.0
|
15.0
|
1.0
|
NA
|
C:HEM142
|
2.0
|
15.0
|
1.0
|
NE2
|
C:HIS87
|
2.1
|
15.0
|
1.0
|
CE1
|
C:HIS87
|
2.9
|
15.0
|
1.0
|
C1D
|
C:HEM142
|
3.0
|
15.0
|
1.0
|
C4D
|
C:HEM142
|
3.0
|
15.0
|
1.0
|
C4C
|
C:HEM142
|
3.0
|
15.0
|
1.0
|
C4A
|
C:HEM142
|
3.0
|
15.0
|
1.0
|
C1C
|
C:HEM142
|
3.1
|
15.0
|
1.0
|
C1B
|
C:HEM142
|
3.1
|
15.0
|
1.0
|
C4B
|
C:HEM142
|
3.1
|
15.0
|
1.0
|
C1A
|
C:HEM142
|
3.1
|
15.0
|
1.0
|
CD2
|
C:HIS87
|
3.2
|
15.0
|
1.0
|
CHD
|
C:HEM142
|
3.4
|
15.0
|
1.0
|
CHB
|
C:HEM142
|
3.4
|
15.0
|
1.0
|
CHC
|
C:HEM142
|
3.4
|
15.0
|
1.0
|
CHA
|
C:HEM142
|
3.4
|
15.0
|
1.0
|
NE2
|
C:HIS58
|
4.1
|
15.0
|
1.0
|
ND1
|
C:HIS87
|
4.1
|
15.0
|
1.0
|
C2D
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
C3D
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
C3C
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
CG
|
C:HIS87
|
4.3
|
15.0
|
1.0
|
C2C
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
C2A
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
C3B
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
C3A
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
C2B
|
C:HEM142
|
4.3
|
15.0
|
1.0
|
CG2
|
C:VAL62
|
4.5
|
15.0
|
1.0
|
CE1
|
C:HIS58
|
4.9
|
15.0
|
1.0
|
|
Iron binding site 4 out
of 4 in 1cmy
Go back to
Iron Binding Sites List in 1cmy
Iron binding site 4 out
of 4 in the The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Mutation BETA99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State of Human Hemoglobin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:15.0
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
15.0
|
1.0
|
NE2
|
D:HIS92
|
2.0
|
15.0
|
1.0
|
ND
|
D:HEM147
|
2.0
|
15.0
|
1.0
|
NA
|
D:HEM147
|
2.0
|
15.0
|
1.0
|
NB
|
D:HEM147
|
2.0
|
15.0
|
1.0
|
NC
|
D:HEM147
|
2.0
|
15.0
|
1.0
|
CE1
|
D:HIS92
|
2.6
|
15.0
|
1.0
|
C4A
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C4D
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C1A
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C1D
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C4B
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C1B
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C1C
|
D:HEM147
|
3.0
|
15.0
|
1.0
|
C4C
|
D:HEM147
|
3.1
|
15.0
|
1.0
|
CD2
|
D:HIS92
|
3.2
|
15.0
|
1.0
|
CHA
|
D:HEM147
|
3.4
|
15.0
|
1.0
|
CHB
|
D:HEM147
|
3.4
|
15.0
|
1.0
|
CHC
|
D:HEM147
|
3.4
|
15.0
|
1.0
|
CHD
|
D:HEM147
|
3.4
|
15.0
|
1.0
|
ND1
|
D:HIS92
|
3.9
|
15.0
|
1.0
|
CG
|
D:HIS92
|
4.2
|
15.0
|
1.0
|
C3D
|
D:HEM147
|
4.2
|
15.0
|
1.0
|
C3A
|
D:HEM147
|
4.2
|
15.0
|
1.0
|
C2A
|
D:HEM147
|
4.2
|
15.0
|
1.0
|
C2D
|
D:HEM147
|
4.2
|
15.0
|
1.0
|
C3B
|
D:HEM147
|
4.3
|
15.0
|
1.0
|
C2B
|
D:HEM147
|
4.3
|
15.0
|
1.0
|
C2C
|
D:HEM147
|
4.3
|
15.0
|
1.0
|
C3C
|
D:HEM147
|
4.3
|
15.0
|
1.0
|
NE2
|
D:HIS63
|
4.3
|
15.0
|
1.0
|
CG2
|
D:VAL67
|
4.4
|
15.0
|
1.0
|
CE1
|
D:HIS63
|
4.9
|
15.0
|
1.0
|
|
Reference:
F.R.Smith,
E.E.Lattman,
C.W.Carter Jr..
The Mutation Beta 99 Asp-Tyr Stabilizes Y--A New, Composite Quaternary State of Human Hemoglobin. Proteins V. 10 81 1991.
ISSN: ISSN 0887-3585
PubMed: 1896430
DOI: 10.1002/PROT.340100202
Page generated: Sat Aug 3 03:24:12 2024
|