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Iron in PDB 1coj: Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium

Protein crystallography data

The structure of Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium, PDB code: 1coj was solved by J.H.Lim, Y.G.Yu, S.-H.Kim, S.-J.Cho, B.Y.Ahn, Y.S.Han, Y.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.90
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 70.700, 75.630, 87.300, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20

Iron Binding Sites:

The binding sites of Iron atom in the Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium (pdb code 1coj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium, PDB code: 1coj:

Iron binding site 1 out of 1 in 1coj

Go back to Iron Binding Sites List in 1coj
Iron binding site 1 out of 1 in the Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe213

b:20.1
occ:0.55
OD2 A:ASP163 2.0 15.6 1.0
O A:HOH331 2.0 13.6 1.0
NE2 A:HIS167 2.1 19.6 1.0
NE2 A:HIS27 2.1 18.3 1.0
NE2 A:HIS81 2.2 14.0 1.0
CE1 A:HIS81 3.0 12.9 1.0
CD2 A:HIS167 3.0 15.1 1.0
CG A:ASP163 3.0 14.2 1.0
CE1 A:HIS27 3.1 17.9 1.0
CD2 A:HIS27 3.1 13.9 1.0
CE1 A:HIS167 3.2 16.4 1.0
CD2 A:HIS81 3.3 10.0 1.0
OD1 A:ASP163 3.5 12.2 1.0
ND1 A:HIS81 4.2 8.4 1.0
CG A:HIS167 4.2 15.0 1.0
ND1 A:HIS167 4.3 13.7 1.0
ND1 A:HIS27 4.3 14.2 1.0
CG A:HIS27 4.3 13.9 1.0
CB A:ASP163 4.3 9.1 1.0
CG A:HIS81 4.4 9.4 1.0
CB A:TYR165 4.4 9.8 1.0
CZ2 A:TRP128 4.5 9.0 1.0
CH2 A:TRP128 4.5 8.3 1.0
CB A:ALA168 4.7 12.6 1.0
CG A:TYR165 4.7 10.8 1.0
CD2 A:TYR165 5.0 11.1 1.0

Reference:

J.H.Lim, Y.G.Yu, Y.S.Han, S.Cho, B.Y.Ahn, S.H.Kim, Y.Cho. The Crystal Structure of An Fe-Superoxide Dismutase From the Hyperthermophile Aquifex Pyrophilus at 1.9 A Resolution: Structural Basis For Thermostability. J.Mol.Biol. V. 270 259 1997.
ISSN: ISSN 0022-2836
PubMed: 9236127
DOI: 10.1006/JMBI.1997.1105
Page generated: Sun Dec 13 14:09:22 2020

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