Atomistry » Iron » PDB 1ch3-1cp2 » 1coj
Atomistry »
  Iron »
    PDB 1ch3-1cp2 »
      1coj »

Iron in PDB 1coj: Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium

Protein crystallography data

The structure of Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium, PDB code: 1coj was solved by J.H.Lim, Y.G.Yu, S.-H.Kim, S.-J.Cho, B.Y.Ahn, Y.S.Han, Y.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.90
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 70.700, 75.630, 87.300, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20

Iron Binding Sites:

The binding sites of Iron atom in the Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium (pdb code 1coj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium, PDB code: 1coj:

Iron binding site 1 out of 1 in 1coj

Go back to Iron Binding Sites List in 1coj
Iron binding site 1 out of 1 in the Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe213

b:20.1
occ:0.55
OD2 A:ASP163 2.0 15.6 1.0
O A:HOH331 2.0 13.6 1.0
NE2 A:HIS167 2.1 19.6 1.0
NE2 A:HIS27 2.1 18.3 1.0
NE2 A:HIS81 2.2 14.0 1.0
CE1 A:HIS81 3.0 12.9 1.0
CD2 A:HIS167 3.0 15.1 1.0
CG A:ASP163 3.0 14.2 1.0
CE1 A:HIS27 3.1 17.9 1.0
CD2 A:HIS27 3.1 13.9 1.0
CE1 A:HIS167 3.2 16.4 1.0
CD2 A:HIS81 3.3 10.0 1.0
OD1 A:ASP163 3.5 12.2 1.0
ND1 A:HIS81 4.2 8.4 1.0
CG A:HIS167 4.2 15.0 1.0
ND1 A:HIS167 4.3 13.7 1.0
ND1 A:HIS27 4.3 14.2 1.0
CG A:HIS27 4.3 13.9 1.0
CB A:ASP163 4.3 9.1 1.0
CG A:HIS81 4.4 9.4 1.0
CB A:TYR165 4.4 9.8 1.0
CZ2 A:TRP128 4.5 9.0 1.0
CH2 A:TRP128 4.5 8.3 1.0
CB A:ALA168 4.7 12.6 1.0
CG A:TYR165 4.7 10.8 1.0
CD2 A:TYR165 5.0 11.1 1.0

Reference:

J.H.Lim, Y.G.Yu, Y.S.Han, S.Cho, B.Y.Ahn, S.H.Kim, Y.Cho. The Crystal Structure of An Fe-Superoxide Dismutase From the Hyperthermophile Aquifex Pyrophilus at 1.9 A Resolution: Structural Basis For Thermostability. J.Mol.Biol. V. 270 259 1997.
ISSN: ISSN 0022-2836
PubMed: 9236127
DOI: 10.1006/JMBI.1997.1105
Page generated: Sat Aug 3 03:25:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy