Iron in PDB 1fdh: Structure of Human Foetal Deoxyhaemoglobin

The structure of Structure of Human Foetal Deoxyhaemoglobin, PDB code: 1fdh was solved by J.A.Frierjunior, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.800, 95.100, 102.100, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Iron atom in the Structure of Human Foetal Deoxyhaemoglobin (pdb code 1fdh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Human Foetal Deoxyhaemoglobin, PDB code: 1fdh:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of Human Foetal Deoxyhaemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Human Foetal Deoxyhaemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe142 b:0.0 occ:1.00 FE A:HEM142 0.0 0.0 1.0 NE2 A:HIS87 2.0 0.0 1.0 NC A:HEM142 2.0 0.0 1.0 NB A:HEM142 2.1 0.0 1.0 ND A:HEM142 2.1 0.0 1.0 NA A:HEM142 2.1 0.0 1.0 CE1 A:HIS87 2.9 0.0 1.0 CD2 A:HIS87 3.0 0.0 1.0 C1C A:HEM142 3.0 0.0 1.0 C4C A:HEM142 3.1 0.0 1.0 C4B A:HEM142 3.1 0.0 1.0 C1D A:HEM142 3.1 0.0 1.0 C1B A:HEM142 3.1 0.0 1.0 C4D A:HEM142 3.1 0.0 1.0 C4A A:HEM142 3.1 0.0 1.0 C1A A:HEM142 3.2 0.0 1.0 CHC A:HEM142 3.4 0.0 1.0 CHD A:HEM142 3.4 0.0 1.0 CHB A:HEM142 3.5 0.0 1.0 CHA A:HEM142 3.5 0.0 1.0 ND1 A:HIS87 4.0 0.0 1.0 CG A:HIS87 4.1 0.0 1.0 C2C A:HEM142 4.3 0.0 1.0 C3C A:HEM142 4.3 0.0 1.0 C3B A:HEM142 4.3 0.0 1.0 C2D A:HEM142 4.3 0.0 1.0 C2B A:HEM142 4.3 0.0 1.0 C3D A:HEM142 4.3 0.0 1.0 C3A A:HEM142 4.4 0.0 1.0 C2A A:HEM142 4.4 0.0 1.0 CD1 A:LEU91 4.5 0.0 1.0 CE1 A:HIS58 4.5 0.0 1.0 NE2 A:HIS58 4.7 0.0 1.0

Iron binding site 2 out of 4 in the Structure of Human Foetal Deoxyhaemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Human Foetal Deoxyhaemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe147 b:0.0 occ:1.00 FE G:HEM147 0.0 0.0 1.0 ND G:HEM147 2.1 0.0 1.0 NC G:HEM147 2.1 0.0 1.0 NA G:HEM147 2.1 0.0 1.0 NB G:HEM147 2.1 0.0 1.0 NE2 G:HIS92 2.2 0.0 1.0 CE1 G:HIS92 3.1 0.0 1.0 C1D G:HEM147 3.1 0.0 1.0 C4D G:HEM147 3.1 0.0 1.0 C4C G:HEM147 3.1 0.0 1.0 C1A G:HEM147 3.1 0.0 1.0 C1C G:HEM147 3.1 0.0 1.0 C4A G:HEM147 3.1 0.0 1.0 C4B G:HEM147 3.1 0.0 1.0 C1B G:HEM147 3.1 0.0 1.0 CD2 G:HIS92 3.3 0.0 1.0 CHD G:HEM147 3.4 0.0 1.0 CHA G:HEM147 3.4 0.0 1.0 CHC G:HEM147 3.5 0.0 1.0 CHB G:HEM147 3.5 0.0 1.0 CE1 G:HIS63 4.1 0.0 1.0 CG2 G:VAL67 4.1 0.0 1.0 ND1 G:HIS92 4.2 0.0 1.0 C2D G:HEM147 4.3 0.0 1.0 C3D G:HEM147 4.3 0.0 1.0 C3C G:HEM147 4.3 0.0 1.0 C2C G:HEM147 4.3 0.0 1.0 C2A G:HEM147 4.3 0.0 1.0 C3A G:HEM147 4.3 0.0 1.0 C3B G:HEM147 4.3 0.0 1.0 C2B G:HEM147 4.3 0.0 1.0 NE2 G:HIS63 4.4 0.0 1.0 CG G:HIS92 4.4 0.0 1.0 CD1 G:LEU96 4.7 0.0 1.0

Iron binding site 3 out of 4 in the Structure of Human Foetal Deoxyhaemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Human Foetal Deoxyhaemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe142 b:0.0 occ:1.00 FE B:HEM142 0.0 0.0 1.0 NE2 B:HIS87 2.0 0.0 1.0 NC B:HEM142 2.0 0.0 1.0 NB B:HEM142 2.1 0.0 1.0 ND B:HEM142 2.1 0.0 1.0 NA B:HEM142 2.1 0.0 1.0 CE1 B:HIS87 2.9 0.0 1.0 CD2 B:HIS87 3.0 0.0 1.0 C1C B:HEM142 3.0 0.0 1.0 C4C B:HEM142 3.1 0.0 1.0 C4B B:HEM142 3.1 0.0 1.0 C1D B:HEM142 3.1 0.0 1.0 C1B B:HEM142 3.1 0.0 1.0 C4D B:HEM142 3.1 0.0 1.0 C4A B:HEM142 3.1 0.0 1.0 C1A B:HEM142 3.2 0.0 1.0 CHC B:HEM142 3.4 0.0 1.0 CHD B:HEM142 3.4 0.0 1.0 CHB B:HEM142 3.5 0.0 1.0 CHA B:HEM142 3.5 0.0 1.0 ND1 B:HIS87 4.0 0.0 1.0 CG B:HIS87 4.1 0.0 1.0 C2C B:HEM142 4.3 0.0 1.0 C3C B:HEM142 4.3 0.0 1.0 C3B B:HEM142 4.3 0.0 1.0 C2D B:HEM142 4.3 0.0 1.0 C2B B:HEM142 4.3 0.0 1.0 C3D B:HEM142 4.3 0.0 1.0 C3A B:HEM142 4.4 0.0 1.0 C2A B:HEM142 4.4 0.0 1.0 CD1 B:LEU91 4.5 0.0 1.0 CE1 B:HIS58 4.5 0.0 1.0 NE2 B:HIS58 4.7 0.0 1.0

Iron binding site 4 out of 4 in the Structure of Human Foetal Deoxyhaemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Human Foetal Deoxyhaemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe147 b:0.0 occ:1.00 FE H:HEM147 0.0 0.0 1.0 ND H:HEM147 2.1 0.0 1.0 NC H:HEM147 2.1 0.0 1.0 NA H:HEM147 2.1 0.0 1.0 NB H:HEM147 2.1 0.0 1.0 NE2 H:HIS92 2.2 0.0 1.0 CE1 H:HIS92 3.1 0.0 1.0 C1D H:HEM147 3.1 0.0 1.0 C4D H:HEM147 3.1 0.0 1.0 C4C H:HEM147 3.1 0.0 1.0 C1A H:HEM147 3.1 0.0 1.0 C1C H:HEM147 3.1 0.0 1.0 C4A H:HEM147 3.1 0.0 1.0 C4B H:HEM147 3.1 0.0 1.0 C1B H:HEM147 3.1 0.0 1.0 CD2 H:HIS92 3.3 0.0 1.0 CHD H:HEM147 3.4 0.0 1.0 CHA H:HEM147 3.4 0.0 1.0 CHC H:HEM147 3.5 0.0 1.0 CHB H:HEM147 3.5 0.0 1.0 CE1 H:HIS63 4.1 0.0 1.0 CG2 H:VAL67 4.1 0.0 1.0 ND1 H:HIS92 4.2 0.0 1.0 C2D H:HEM147 4.3 0.0 1.0 C3D H:HEM147 4.3 0.0 1.0 C3C H:HEM147 4.3 0.0 1.0 C2C H:HEM147 4.3 0.0 1.0 C2A H:HEM147 4.3 0.0 1.0 C3A H:HEM147 4.3 0.0 1.0 C3B H:HEM147 4.3 0.0 1.0 C2B H:HEM147 4.3 0.0 1.0 NE2 H:HIS63 4.4 0.0 1.0 CG H:HIS92 4.4 0.0 1.0 CD1 H:LEU96 4.7 0.0 1.0

J.A.Frier, M.F.Perutz. Structure of Human Foetal Deoxyhaemoglobin. J.Mol.Biol. V. 112 97 1977.
ISSN: ISSN 0022-2836
PubMed: 881729
DOI: 10.1016/S0022-2836(77)80158-7