Iron in PDB 1frv: Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
Enzymatic activity of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
All present enzymatic activity of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase:
1.12.2.1;
Protein crystallography data
The structure of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase, PDB code: 1frv
was solved by
A.Volbeda,
M.Frey,
J.C.Fontecilla-Camps,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.85
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.600,
93.900,
69.200,
89.80,
102.90,
90.80
|
R / Rfree (%)
|
17.8 /
n/a
|
Other elements in 1frv:
The structure of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
(pdb code 1frv). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the
Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase, PDB code: 1frv:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 1 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_01.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe265
b:11.8
occ:1.00
|
FE1
|
A:SF4265
|
0.0
|
11.8
|
1.0
|
S3
|
A:SF4265
|
2.3
|
13.9
|
1.0
|
S4
|
A:SF4265
|
2.3
|
13.7
|
1.0
|
SG
|
A:CYS219
|
2.3
|
11.4
|
1.0
|
S2
|
A:SF4265
|
2.3
|
11.8
|
1.0
|
FE2
|
A:SF4265
|
2.7
|
11.8
|
1.0
|
FE3
|
A:SF4265
|
2.7
|
15.1
|
1.0
|
FE4
|
A:SF4265
|
2.7
|
15.5
|
1.0
|
CB
|
A:CYS219
|
3.4
|
11.1
|
1.0
|
S1
|
A:SF4265
|
3.9
|
13.1
|
1.0
|
N
|
A:GLY221
|
4.3
|
7.7
|
1.0
|
CD
|
A:PRO222
|
4.4
|
11.9
|
1.0
|
CA
|
A:GLY221
|
4.5
|
8.6
|
1.0
|
ND1
|
A:HIS185
|
4.5
|
16.1
|
1.0
|
CA
|
A:CYS219
|
4.6
|
9.6
|
1.0
|
N
|
A:TYR215
|
4.6
|
14.6
|
1.0
|
SG
|
A:CYS213
|
4.7
|
14.1
|
1.0
|
CB
|
A:LEU214
|
4.7
|
10.7
|
1.0
|
C
|
A:CYS219
|
4.7
|
9.8
|
1.0
|
N
|
A:LEU214
|
4.8
|
12.8
|
1.0
|
SG
|
A:CYS188
|
4.9
|
11.5
|
1.0
|
C
|
A:LEU214
|
4.9
|
14.7
|
1.0
|
N
|
A:LYS220
|
5.0
|
8.3
|
1.0
|
CA
|
A:LEU214
|
5.0
|
13.4
|
1.0
|
|
Iron binding site 2 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 2 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_02.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe265
b:11.8
occ:1.00
|
FE2
|
A:SF4265
|
0.0
|
11.8
|
1.0
|
S4
|
A:SF4265
|
2.3
|
13.7
|
1.0
|
S1
|
A:SF4265
|
2.3
|
13.1
|
1.0
|
SG
|
A:CYS188
|
2.3
|
11.5
|
1.0
|
S3
|
A:SF4265
|
2.3
|
13.9
|
1.0
|
FE1
|
A:SF4265
|
2.7
|
11.8
|
1.0
|
FE3
|
A:SF4265
|
2.7
|
15.1
|
1.0
|
FE4
|
A:SF4265
|
2.8
|
15.5
|
1.0
|
CB
|
A:CYS188
|
3.2
|
14.7
|
1.0
|
S2
|
A:SF4265
|
3.9
|
11.8
|
1.0
|
CG1
|
A:VAL240
|
4.2
|
11.1
|
1.0
|
CB
|
A:ARG190
|
4.3
|
10.5
|
1.0
|
CA
|
A:CYS188
|
4.6
|
17.2
|
1.0
|
SG
|
A:CYS219
|
4.7
|
11.4
|
1.0
|
ND1
|
A:HIS185
|
4.7
|
16.1
|
1.0
|
CG
|
A:ARG190
|
4.8
|
8.5
|
1.0
|
C
|
A:ARG190
|
4.8
|
13.7
|
1.0
|
O
|
A:ARG190
|
4.9
|
14.1
|
1.0
|
CA
|
A:HIS185
|
4.9
|
19.5
|
1.0
|
CH2
|
A:TRP238
|
4.9
|
19.3
|
1.0
|
N
|
A:ARG190
|
4.9
|
14.3
|
1.0
|
CG2
|
A:VAL240
|
4.9
|
13.0
|
1.0
|
CA
|
A:ARG190
|
4.9
|
12.7
|
1.0
|
SG
|
A:CYS213
|
5.0
|
14.1
|
1.0
|
C
|
A:CYS188
|
5.0
|
17.6
|
1.0
|
|
Iron binding site 3 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 3 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_03.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe265
b:15.1
occ:1.00
|
FE3
|
A:SF4265
|
0.0
|
15.1
|
1.0
|
S2
|
A:SF4265
|
2.3
|
11.8
|
1.0
|
S1
|
A:SF4265
|
2.3
|
13.1
|
1.0
|
S4
|
A:SF4265
|
2.3
|
13.7
|
1.0
|
SG
|
A:CYS213
|
2.4
|
14.1
|
1.0
|
FE4
|
A:SF4265
|
2.7
|
15.5
|
1.0
|
FE2
|
A:SF4265
|
2.7
|
11.8
|
1.0
|
FE1
|
A:SF4265
|
2.7
|
11.8
|
1.0
|
CB
|
A:CYS213
|
3.4
|
13.5
|
1.0
|
N
|
A:LEU214
|
3.9
|
12.8
|
1.0
|
S3
|
A:SF4265
|
3.9
|
13.9
|
1.0
|
O
|
A:ARG190
|
4.1
|
14.1
|
1.0
|
CA
|
A:CYS213
|
4.1
|
13.3
|
1.0
|
CD1
|
A:PHE194
|
4.2
|
7.8
|
1.0
|
N
|
A:TYR215
|
4.2
|
14.6
|
1.0
|
CB
|
A:PHE194
|
4.3
|
9.9
|
1.0
|
ND1
|
A:HIS185
|
4.4
|
16.1
|
1.0
|
C
|
A:CYS213
|
4.5
|
13.1
|
1.0
|
CB
|
A:ARG190
|
4.5
|
10.5
|
1.0
|
CE1
|
A:HIS185
|
4.6
|
15.8
|
1.0
|
CG
|
A:PHE194
|
4.6
|
8.4
|
1.0
|
C
|
A:ARG190
|
4.7
|
13.7
|
1.0
|
CA
|
A:LEU214
|
4.8
|
13.4
|
1.0
|
SG
|
A:CYS188
|
4.8
|
11.5
|
1.0
|
SG
|
A:CYS219
|
4.9
|
11.4
|
1.0
|
C
|
A:LEU214
|
4.9
|
14.7
|
1.0
|
CA
|
A:TYR215
|
5.0
|
14.4
|
1.0
|
|
Iron binding site 4 out
of 24 in 1frv
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Iron Binding Sites List in 1frv
Iron binding site 4 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_04.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe265
b:15.5
occ:1.00
|
FE4
|
A:SF4265
|
0.0
|
15.5
|
1.0
|
ND1
|
A:HIS185
|
2.0
|
16.1
|
1.0
|
S1
|
A:SF4265
|
2.3
|
13.1
|
1.0
|
S2
|
A:SF4265
|
2.3
|
11.8
|
1.0
|
S3
|
A:SF4265
|
2.3
|
13.9
|
1.0
|
FE3
|
A:SF4265
|
2.7
|
15.1
|
1.0
|
FE1
|
A:SF4265
|
2.7
|
11.8
|
1.0
|
FE2
|
A:SF4265
|
2.8
|
11.8
|
1.0
|
CE1
|
A:HIS185
|
2.9
|
15.8
|
1.0
|
CG
|
A:HIS185
|
3.0
|
17.2
|
1.0
|
CB
|
A:HIS185
|
3.5
|
17.8
|
1.0
|
CA
|
A:HIS185
|
3.8
|
19.5
|
1.0
|
S4
|
A:SF4265
|
3.9
|
13.7
|
1.0
|
NE2
|
A:HIS185
|
3.9
|
16.5
|
1.0
|
CD2
|
A:HIS185
|
4.0
|
16.9
|
1.0
|
CD
|
A:PRO222
|
4.2
|
11.9
|
1.0
|
CG
|
A:PRO222
|
4.4
|
12.3
|
1.0
|
N
|
A:PRO222
|
4.6
|
11.5
|
1.0
|
SG
|
A:CYS188
|
4.7
|
11.5
|
1.0
|
SG
|
A:CYS213
|
4.7
|
14.1
|
1.0
|
CA
|
A:GLY221
|
4.7
|
8.6
|
1.0
|
O
|
A:HIS185
|
4.8
|
20.1
|
1.0
|
C
|
A:HIS185
|
4.8
|
20.0
|
1.0
|
SG
|
A:CYS219
|
4.8
|
11.4
|
1.0
|
CB
|
A:CYS188
|
4.8
|
14.7
|
1.0
|
CD1
|
A:PHE194
|
4.8
|
7.8
|
1.0
|
N
|
A:HIS185
|
4.9
|
20.0
|
1.0
|
C
|
A:GLY221
|
4.9
|
10.5
|
1.0
|
CG
|
A:PHE194
|
5.0
|
8.4
|
1.0
|
|
Iron binding site 5 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 5 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_05.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe266
b:15.7
occ:1.00
|
FE1
|
A:F3S266
|
0.0
|
15.7
|
1.0
|
S1
|
A:F3S266
|
2.3
|
13.0
|
1.0
|
S2
|
A:F3S266
|
2.3
|
13.5
|
1.0
|
S3
|
A:F3S266
|
2.3
|
10.5
|
1.0
|
SG
|
A:CYS246
|
2.4
|
13.8
|
1.0
|
FE3
|
A:F3S266
|
2.7
|
12.6
|
1.0
|
FE4
|
A:F3S266
|
2.8
|
13.7
|
1.0
|
CB
|
A:CYS246
|
3.4
|
13.6
|
1.0
|
CA
|
A:CYS246
|
3.8
|
13.1
|
1.0
|
S4
|
A:F3S266
|
3.9
|
11.7
|
1.0
|
N
|
A:ILE247
|
4.2
|
13.8
|
1.0
|
CG2
|
A:VAL184
|
4.3
|
20.8
|
1.0
|
C
|
A:CYS246
|
4.4
|
13.2
|
1.0
|
N
|
A:ALA248
|
4.6
|
14.2
|
1.0
|
SG
|
A:CYS228
|
4.7
|
12.7
|
1.0
|
CG2
|
A:THR224
|
4.7
|
7.3
|
1.0
|
CG
|
A:PRO239
|
4.8
|
13.4
|
1.0
|
NE2
|
B:GLN221
|
5.0
|
8.9
|
1.0
|
SG
|
A:CYS249
|
5.0
|
12.9
|
1.0
|
|
Iron binding site 6 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 6 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_06.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe266
b:12.6
occ:1.00
|
FE3
|
A:F3S266
|
0.0
|
12.6
|
1.0
|
S1
|
A:F3S266
|
2.3
|
13.0
|
1.0
|
S4
|
A:F3S266
|
2.3
|
11.7
|
1.0
|
S3
|
A:F3S266
|
2.3
|
10.5
|
1.0
|
SG
|
A:CYS249
|
2.3
|
12.9
|
1.0
|
FE1
|
A:F3S266
|
2.7
|
15.7
|
1.0
|
FE4
|
A:F3S266
|
2.7
|
13.7
|
1.0
|
CB
|
A:CYS249
|
3.4
|
13.9
|
1.0
|
N
|
A:CYS249
|
3.8
|
15.2
|
1.0
|
S2
|
A:F3S266
|
3.9
|
13.5
|
1.0
|
CA
|
A:CYS249
|
4.0
|
15.0
|
1.0
|
C
|
A:CYS249
|
4.6
|
15.2
|
1.0
|
SG
|
A:CYS246
|
4.6
|
13.8
|
1.0
|
ND2
|
A:ASN226
|
4.7
|
9.7
|
1.0
|
SG
|
A:CYS228
|
4.8
|
12.7
|
1.0
|
N
|
A:SER250
|
4.8
|
15.1
|
1.0
|
C
|
A:ALA248
|
4.9
|
15.5
|
1.0
|
N
|
A:ALA248
|
5.0
|
14.2
|
1.0
|
|
Iron binding site 7 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 7 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_07.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe266
b:13.7
occ:1.00
|
FE4
|
A:F3S266
|
0.0
|
13.7
|
1.0
|
S4
|
A:F3S266
|
2.3
|
11.7
|
1.0
|
S3
|
A:F3S266
|
2.3
|
10.5
|
1.0
|
S2
|
A:F3S266
|
2.3
|
13.5
|
1.0
|
SG
|
A:CYS228
|
2.3
|
12.7
|
1.0
|
FE3
|
A:F3S266
|
2.7
|
12.6
|
1.0
|
FE1
|
A:F3S266
|
2.8
|
15.7
|
1.0
|
CB
|
A:CYS228
|
3.4
|
12.9
|
1.0
|
CZ
|
A:PHE233
|
3.9
|
14.2
|
1.0
|
CE2
|
A:PHE233
|
3.9
|
14.7
|
1.0
|
S1
|
A:F3S266
|
3.9
|
13.0
|
1.0
|
ND2
|
A:ASN226
|
4.1
|
9.7
|
1.0
|
CG2
|
A:VAL184
|
4.5
|
20.8
|
1.0
|
CG
|
A:ASN226
|
4.5
|
10.3
|
1.0
|
SG
|
A:CYS249
|
4.6
|
12.9
|
1.0
|
CB
|
A:ASN226
|
4.7
|
9.6
|
1.0
|
CG
|
A:PRO239
|
4.7
|
13.4
|
1.0
|
CD
|
A:PRO239
|
4.7
|
13.7
|
1.0
|
CA
|
A:CYS228
|
4.8
|
12.8
|
1.0
|
|
Iron binding site 8 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 8 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_08.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe267
b:9.7
occ:1.00
|
FE1
|
A:SF4267
|
0.0
|
9.7
|
1.0
|
S4
|
A:SF4267
|
2.3
|
8.8
|
1.0
|
SG
|
A:CYS17
|
2.3
|
8.4
|
1.0
|
S2
|
A:SF4267
|
2.3
|
12.0
|
1.0
|
S3
|
A:SF4267
|
2.3
|
11.2
|
1.0
|
FE3
|
A:SF4267
|
2.7
|
8.8
|
1.0
|
FE4
|
A:SF4267
|
2.8
|
10.1
|
1.0
|
FE2
|
A:SF4267
|
2.8
|
4.8
|
1.0
|
CB
|
A:CYS17
|
3.4
|
9.4
|
1.0
|
N
|
A:GLY19
|
3.8
|
6.1
|
1.0
|
S1
|
A:SF4267
|
4.0
|
9.3
|
1.0
|
CA
|
A:GLY19
|
4.0
|
7.3
|
1.0
|
NE2
|
B:HIS219
|
4.0
|
13.1
|
1.0
|
N
|
A:CYS17
|
4.1
|
7.6
|
1.0
|
CA
|
A:CYS17
|
4.2
|
7.6
|
1.0
|
C
|
A:CYS17
|
4.4
|
6.7
|
1.0
|
CD2
|
B:HIS219
|
4.6
|
13.5
|
1.0
|
N
|
A:THR18
|
4.6
|
7.2
|
1.0
|
SG
|
A:CYS148
|
4.7
|
4.8
|
1.0
|
N
|
A:CYS20
|
4.8
|
9.2
|
1.0
|
O
|
A:CYS17
|
4.8
|
6.0
|
1.0
|
SG
|
A:CYS112
|
4.9
|
9.2
|
1.0
|
CG
|
B:ARG63
|
4.9
|
4.1
|
1.0
|
C
|
A:GLY19
|
5.0
|
8.7
|
1.0
|
SG
|
A:CYS20
|
5.0
|
8.8
|
1.0
|
|
Iron binding site 9 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 9 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_09.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe267
b:4.8
occ:1.00
|
FE2
|
A:SF4267
|
0.0
|
4.8
|
1.0
|
S1
|
A:SF4267
|
2.2
|
9.3
|
1.0
|
S3
|
A:SF4267
|
2.3
|
11.2
|
1.0
|
SG
|
A:CYS20
|
2.3
|
8.8
|
1.0
|
S4
|
A:SF4267
|
2.3
|
8.8
|
1.0
|
FE4
|
A:SF4267
|
2.7
|
10.1
|
1.0
|
FE3
|
A:SF4267
|
2.7
|
8.8
|
1.0
|
FE1
|
A:SF4267
|
2.8
|
9.7
|
1.0
|
CB
|
A:CYS20
|
3.5
|
6.5
|
1.0
|
N
|
A:CYS20
|
3.7
|
9.2
|
1.0
|
S2
|
A:SF4267
|
3.9
|
12.0
|
1.0
|
CA
|
A:CYS20
|
4.2
|
8.2
|
1.0
|
CB
|
A:PRO149
|
4.2
|
8.5
|
1.0
|
CA
|
A:GLY110
|
4.3
|
10.1
|
1.0
|
CA
|
A:PRO149
|
4.4
|
9.0
|
1.0
|
CA
|
A:GLY19
|
4.5
|
7.3
|
1.0
|
C
|
A:GLY19
|
4.5
|
8.7
|
1.0
|
N
|
A:GLY19
|
4.6
|
6.1
|
1.0
|
O
|
A:ILE109
|
4.8
|
12.4
|
1.0
|
CA
|
A:CYS148
|
4.8
|
7.1
|
1.0
|
SG
|
A:CYS112
|
4.9
|
9.2
|
1.0
|
N
|
A:PRO149
|
4.9
|
7.7
|
1.0
|
SG
|
A:CYS17
|
4.9
|
8.4
|
1.0
|
O
|
A:GLY147
|
5.0
|
10.0
|
1.0
|
SG
|
A:CYS148
|
5.0
|
4.8
|
1.0
|
|
Iron binding site 10 out
of 24 in 1frv
Go back to
Iron Binding Sites List in 1frv
Iron binding site 10 out
of 24 in the Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase
![](/pictures/FE/pdb/fr/1frv-FE-sphere_10.jpg) Mono view
![](/pictures/FE/pdb/fr/1frv-FE-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of the Oxidized Form of Ni-Fe Hydrogenase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe267
b:8.8
occ:1.00
|
FE3
|
A:SF4267
|
0.0
|
8.8
|
1.0
|
S2
|
A:SF4267
|
2.3
|
12.0
|
1.0
|
S4
|
A:SF4267
|
2.3
|
8.8
|
1.0
|
S1
|
A:SF4267
|
2.3
|
9.3
|
1.0
|
SG
|
A:CYS148
|
2.4
|
4.8
|
1.0
|
FE4
|
A:SF4267
|
2.7
|
10.1
|
1.0
|
FE1
|
A:SF4267
|
2.7
|
9.7
|
1.0
|
FE2
|
A:SF4267
|
2.7
|
4.8
|
1.0
|
CB
|
A:CYS148
|
3.4
|
6.3
|
1.0
|
CA
|
A:CYS148
|
3.4
|
7.1
|
1.0
|
C
|
A:CYS148
|
3.8
|
7.8
|
1.0
|
S3
|
A:SF4267
|
3.9
|
11.2
|
1.0
|
O
|
A:CYS148
|
4.3
|
9.1
|
1.0
|
N
|
A:PRO149
|
4.3
|
7.7
|
1.0
|
SG
|
A:CYS112
|
4.3
|
9.2
|
1.0
|
CA
|
A:PRO149
|
4.6
|
9.0
|
1.0
|
CG
|
B:ARG63
|
4.6
|
4.1
|
1.0
|
SG
|
A:CYS20
|
4.7
|
8.8
|
1.0
|
N
|
A:CYS148
|
4.7
|
8.0
|
1.0
|
CD2
|
B:HIS219
|
4.8
|
13.5
|
1.0
|
SG
|
A:CYS17
|
4.8
|
8.4
|
1.0
|
NE2
|
B:HIS219
|
5.0
|
13.1
|
1.0
|
O
|
A:GLY147
|
5.0
|
10.0
|
1.0
|
CB
|
A:PRO149
|
5.0
|
8.5
|
1.0
|
|
Reference:
A.Volbeda,
M.H.Charon,
C.Piras,
E.C.Hatchikian,
M.Frey,
J.C.Fontecilla-Camps.
Crystal Structure of the Nickel-Iron Hydrogenase From Desulfovibrio Gigas. Nature V. 373 580 1995.
ISSN: ISSN 0028-0836
PubMed: 7854413
DOI: 10.1038/373580A0
Page generated: Sat Aug 3 05:22:32 2024
|