Atomistry » Iron » PDB 1fnq-1fz1 » 1fs7
Atomistry »
  Iron »
    PDB 1fnq-1fz1 »
      1fs7 »

Iron in PDB 1fs7: Cytochrome C Nitrite Reductase From Wolinella Succinogenes

Protein crystallography data

The structure of Cytochrome C Nitrite Reductase From Wolinella Succinogenes, PDB code: 1fs7 was solved by O.Einsle, P.Stach, A.Messerschmidt, J.Simon, A.Kroeger, R.Huber, P.M.H.Kroneck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.60
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 119.822, 119.822, 186.025, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.7

Other elements in 1fs7:

The structure of Cytochrome C Nitrite Reductase From Wolinella Succinogenes also contains other interesting chemical elements:

Yttrium (Y) 3 atoms
Calcium (Ca) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes (pdb code 1fs7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes, PDB code: 1fs7:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in 1fs7

Go back to Iron Binding Sites List in 1fs7
Iron binding site 1 out of 5 in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome C Nitrite Reductase From Wolinella Succinogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe508

b:17.1
occ:1.00
FE A:HEM508 0.0 17.1 1.0
ND A:HEM508 2.0 18.0 1.0
NC A:HEM508 2.0 20.0 1.0
NA A:HEM508 2.0 18.0 1.0
NB A:HEM508 2.0 17.6 1.0
O A:HOH658 2.0 17.0 1.0
NZ A:LYS134 2.1 15.1 1.0
C4C A:HEM508 3.0 13.1 1.0
C4D A:HEM508 3.0 16.6 1.0
C1A A:HEM508 3.0 15.6 1.0
C1D A:HEM508 3.0 17.1 1.0
C1C A:HEM508 3.0 17.5 1.0
C4A A:HEM508 3.0 16.4 1.0
C4B A:HEM508 3.0 17.9 1.0
CE A:LYS134 3.0 14.3 1.0
C1B A:HEM508 3.0 18.5 1.0
CHD A:HEM508 3.4 14.3 1.0
CHA A:HEM508 3.4 16.9 1.0
CHC A:HEM508 3.4 17.0 1.0
CHB A:HEM508 3.4 18.2 1.0
NE2 A:HIS277 4.0 17.6 1.0
O A:HOH660 4.2 22.3 1.0
O A:HOH724 4.3 17.5 1.0
C2A A:HEM508 4.3 17.5 1.0
C3D A:HEM508 4.3 17.0 1.0
C2D A:HEM508 4.3 16.4 1.0
C2C A:HEM508 4.3 17.0 1.0
C3A A:HEM508 4.3 19.7 1.0
C3C A:HEM508 4.3 16.3 1.0
C2B A:HEM508 4.3 19.6 1.0
C3B A:HEM508 4.3 16.9 1.0
CD A:LYS134 4.4 13.4 1.0
O A:HOH712 4.5 19.8 1.0
CD2 A:HIS277 4.7 14.6 1.0
CMD A:HEM510 4.9 18.2 1.0
CE1 A:HIS277 5.0 19.0 1.0

Iron binding site 2 out of 5 in 1fs7

Go back to Iron Binding Sites List in 1fs7
Iron binding site 2 out of 5 in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome C Nitrite Reductase From Wolinella Succinogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe509

b:20.3
occ:1.00
FE A:HEM509 0.0 20.3 1.0
NE2 A:HIS172 2.0 21.4 1.0
ND A:HEM509 2.0 23.4 1.0
NA A:HEM509 2.0 18.0 1.0
NC A:HEM509 2.0 18.9 1.0
NB A:HEM509 2.0 18.9 1.0
NE2 A:HIS313 2.0 20.4 1.0
CE1 A:HIS172 2.9 22.1 1.0
C4D A:HEM509 3.0 23.2 1.0
C4C A:HEM509 3.0 21.6 1.0
C1D A:HEM509 3.0 23.4 1.0
C4A A:HEM509 3.0 24.1 1.0
C1A A:HEM509 3.0 25.8 1.0
CD2 A:HIS313 3.0 21.5 1.0
C1C A:HEM509 3.0 22.3 1.0
CD2 A:HIS172 3.0 18.4 1.0
C1B A:HEM509 3.0 21.9 1.0
C4B A:HEM509 3.1 19.3 1.0
CE1 A:HIS313 3.1 21.4 1.0
CHD A:HEM509 3.4 23.2 1.0
CHA A:HEM509 3.4 24.9 1.0
CHB A:HEM509 3.4 21.7 1.0
CHC A:HEM509 3.4 20.9 1.0
ND1 A:HIS172 4.1 21.0 1.0
CG A:HIS172 4.1 20.9 1.0
CG A:HIS313 4.2 21.1 1.0
ND1 A:HIS313 4.2 21.5 1.0
C3D A:HEM509 4.2 23.2 1.0
C3A A:HEM509 4.3 22.7 1.0
C2D A:HEM509 4.3 23.9 1.0
C3C A:HEM509 4.3 20.1 1.0
C2C A:HEM509 4.3 21.2 1.0
C2A A:HEM509 4.3 23.8 1.0
C2B A:HEM509 4.3 23.5 1.0
C3B A:HEM509 4.3 20.9 1.0
CE A:MET300 4.6 22.8 1.0

Iron binding site 3 out of 5 in 1fs7

Go back to Iron Binding Sites List in 1fs7
Iron binding site 3 out of 5 in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cytochrome C Nitrite Reductase From Wolinella Succinogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe510

b:16.8
occ:1.00
FE A:HEM510 0.0 16.8 1.0
NC A:HEM510 2.0 12.4 1.0
NA A:HEM510 2.0 13.0 1.0
ND A:HEM510 2.0 16.4 1.0
NB A:HEM510 2.0 16.1 1.0
NE2 A:HIS215 2.0 15.6 1.0
NE2 A:HIS102 2.0 15.9 1.0
CE1 A:HIS102 2.9 16.8 1.0
CE1 A:HIS215 3.0 15.7 1.0
C4A A:HEM510 3.0 16.8 1.0
C1B A:HEM510 3.0 16.8 1.0
C1D A:HEM510 3.0 15.4 1.0
C1C A:HEM510 3.0 16.2 1.0
C4C A:HEM510 3.0 14.6 1.0
C1A A:HEM510 3.0 16.5 1.0
C4B A:HEM510 3.0 16.6 1.0
C4D A:HEM510 3.1 16.5 1.0
CD2 A:HIS215 3.1 18.9 1.0
CD2 A:HIS102 3.2 17.9 1.0
CHB A:HEM510 3.3 15.1 1.0
CHD A:HEM510 3.4 15.3 1.0
CHC A:HEM510 3.4 15.8 1.0
CHA A:HEM510 3.4 17.9 1.0
ND1 A:HIS102 4.1 16.4 1.0
ND1 A:HIS215 4.2 16.5 1.0
C2C A:HEM510 4.2 16.6 1.0
C2D A:HEM510 4.2 15.2 1.0
C3A A:HEM510 4.2 15.2 1.0
CG A:HIS215 4.2 14.9 1.0
C3C A:HEM510 4.2 14.7 1.0
C2B A:HEM510 4.3 17.2 1.0
C2A A:HEM510 4.3 16.2 1.0
CG A:HIS102 4.3 17.7 1.0
C3D A:HEM510 4.3 16.2 1.0
C3B A:HEM510 4.3 15.5 1.0

Iron binding site 4 out of 5 in 1fs7

Go back to Iron Binding Sites List in 1fs7
Iron binding site 4 out of 5 in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cytochrome C Nitrite Reductase From Wolinella Succinogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe511

b:19.4
occ:1.00
FE A:HEM511 0.0 19.4 1.0
ND A:HEM511 1.9 16.8 1.0
NB A:HEM511 1.9 13.3 1.0
NC A:HEM511 2.0 18.1 1.0
NA A:HEM511 2.0 16.0 1.0
NE2 A:HIS299 2.0 17.8 1.0
NE2 A:HIS405 2.1 18.9 1.0
CE1 A:HIS405 2.9 20.7 1.0
C4D A:HEM511 3.0 18.5 1.0
C1D A:HEM511 3.0 19.1 1.0
C1B A:HEM511 3.0 18.1 1.0
C4A A:HEM511 3.0 17.3 1.0
C4C A:HEM511 3.0 18.4 1.0
C1A A:HEM511 3.0 17.8 1.0
C1C A:HEM511 3.0 17.8 1.0
C4B A:HEM511 3.0 17.6 1.0
CE1 A:HIS299 3.0 19.9 1.0
CD2 A:HIS299 3.1 21.4 1.0
CD2 A:HIS405 3.3 21.1 1.0
CHD A:HEM511 3.4 16.1 1.0
CHA A:HEM511 3.4 16.4 1.0
CHB A:HEM511 3.4 15.2 1.0
CHC A:HEM511 3.4 18.6 1.0
ND1 A:HIS405 4.1 20.3 1.0
ND1 A:HIS299 4.2 19.5 1.0
C3D A:HEM511 4.2 20.1 1.0
CG A:HIS299 4.2 22.3 1.0
C2D A:HEM511 4.2 20.5 1.0
C3A A:HEM511 4.2 14.2 1.0
C2B A:HEM511 4.2 17.5 1.0
C2A A:HEM511 4.3 17.6 1.0
C2C A:HEM511 4.3 18.6 1.0
C3C A:HEM511 4.3 19.1 1.0
C3B A:HEM511 4.3 17.6 1.0
CG A:HIS405 4.3 19.4 1.0

Iron binding site 5 out of 5 in 1fs7

Go back to Iron Binding Sites List in 1fs7
Iron binding site 5 out of 5 in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cytochrome C Nitrite Reductase From Wolinella Succinogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe512

b:25.7
occ:1.00
FE A:HEM512 0.0 25.7 1.0
NC A:HEM512 2.0 27.7 1.0
NB A:HEM512 2.0 22.2 1.0
ND A:HEM512 2.0 25.7 1.0
NA A:HEM512 2.0 24.3 1.0
NE2 A:HIS330 2.0 36.1 1.0
NE2 A:HIS288 2.0 21.6 1.0
CE1 A:HIS330 2.8 35.5 1.0
CE1 A:HIS288 3.0 18.1 1.0
C1C A:HEM512 3.0 26.3 1.0
C4B A:HEM512 3.0 23.2 1.0
C4D A:HEM512 3.0 28.4 1.0
C1A A:HEM512 3.0 26.0 1.0
C1B A:HEM512 3.0 19.2 1.0
C4C A:HEM512 3.0 30.6 1.0
C1D A:HEM512 3.0 29.6 1.0
C4A A:HEM512 3.0 24.7 1.0
CD2 A:HIS288 3.1 19.0 1.0
CD2 A:HIS330 3.2 36.2 1.0
CHC A:HEM512 3.3 25.5 1.0
CHA A:HEM512 3.4 26.0 1.0
CHD A:HEM512 3.4 29.4 1.0
CHB A:HEM512 3.4 22.3 1.0
ND1 A:HIS330 4.1 36.6 1.0
ND1 A:HIS288 4.1 19.7 1.0
CG A:HIS288 4.2 19.9 1.0
C2C A:HEM512 4.2 30.6 1.0
C3B A:HEM512 4.3 25.6 1.0
CG A:HIS330 4.3 39.0 1.0
C2B A:HEM512 4.3 21.4 1.0
C3D A:HEM512 4.3 30.2 1.0
C2A A:HEM512 4.3 25.3 1.0
C2D A:HEM512 4.3 29.6 1.0
C3C A:HEM512 4.3 29.2 1.0
C3A A:HEM512 4.3 26.9 1.0
CBC A:HEM511 4.8 21.5 1.0

Reference:

O.Einsle, P.Stach, A.Messerschmidt, J.Simon, A.Kroger, R.Huber, P.M.Kroneck. Cytochrome C Nitrite Reductase From Wolinella Succinogenes. Structure at 1.6 A Resolution, Inhibitor Binding, and Heme-Packing Motifs. J.Biol.Chem. V. 275 39608 2000.
ISSN: ISSN 0021-9258
PubMed: 10984487
DOI: 10.1074/JBC.M006188200
Page generated: Wed Jul 16 14:27:53 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy