Iron in PDB 1ft9: Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum
Protein crystallography data
The structure of Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum, PDB code: 1ft9
was solved by
W.N.Lanzilotta,
D.J.Schuller,
T.L.Poulos,
M.V.Thorsteinsson,
B.Kirby,
G.P.Roberts,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.60
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.253,
92.253,
143.723,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23 /
28
|
Iron Binding Sites:
The binding sites of Iron atom in the Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum
(pdb code 1ft9). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum, PDB code: 1ft9:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 1ft9
Go back to
Iron Binding Sites List in 1ft9
Iron binding site 1 out
of 2 in the Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe300
b:49.9
occ:1.00
|
FE
|
A:HEM300
|
0.0
|
49.9
|
1.0
|
NC
|
A:HEM300
|
2.0
|
47.9
|
1.0
|
NA
|
A:HEM300
|
2.0
|
51.8
|
1.0
|
ND
|
A:HEM300
|
2.0
|
51.6
|
1.0
|
NB
|
A:HEM300
|
2.0
|
52.7
|
1.0
|
N
|
B:PRO2
|
2.1
|
52.3
|
1.0
|
NE2
|
A:HIS77
|
2.2
|
51.8
|
1.0
|
C4C
|
A:HEM300
|
3.0
|
52.7
|
1.0
|
C1C
|
A:HEM300
|
3.0
|
50.6
|
1.0
|
C1A
|
A:HEM300
|
3.0
|
55.1
|
1.0
|
C4D
|
A:HEM300
|
3.0
|
54.0
|
1.0
|
C1D
|
A:HEM300
|
3.1
|
52.0
|
1.0
|
C4A
|
A:HEM300
|
3.1
|
54.3
|
1.0
|
C4B
|
A:HEM300
|
3.1
|
52.3
|
1.0
|
C1B
|
A:HEM300
|
3.1
|
52.7
|
1.0
|
CD
|
B:PRO2
|
3.1
|
54.8
|
1.0
|
CE1
|
A:HIS77
|
3.2
|
48.3
|
1.0
|
CD2
|
A:HIS77
|
3.2
|
50.1
|
1.0
|
CA
|
B:PRO2
|
3.2
|
53.6
|
1.0
|
CHD
|
A:HEM300
|
3.4
|
52.5
|
1.0
|
CHA
|
A:HEM300
|
3.4
|
54.6
|
1.0
|
CHC
|
A:HEM300
|
3.4
|
51.0
|
1.0
|
CHB
|
A:HEM300
|
3.5
|
52.6
|
1.0
|
C
|
B:PRO2
|
3.9
|
55.2
|
1.0
|
O
|
B:PRO2
|
4.0
|
52.3
|
1.0
|
CG
|
B:PRO2
|
4.1
|
53.2
|
1.0
|
C3C
|
A:HEM300
|
4.2
|
56.2
|
1.0
|
C2C
|
A:HEM300
|
4.3
|
52.6
|
1.0
|
C2D
|
A:HEM300
|
4.3
|
55.0
|
1.0
|
C2A
|
A:HEM300
|
4.3
|
56.4
|
1.0
|
ND1
|
A:HIS77
|
4.3
|
52.8
|
1.0
|
C3D
|
A:HEM300
|
4.3
|
56.7
|
1.0
|
C3A
|
A:HEM300
|
4.3
|
55.6
|
1.0
|
CG
|
A:HIS77
|
4.3
|
54.5
|
1.0
|
C2B
|
A:HEM300
|
4.3
|
53.8
|
1.0
|
C3B
|
A:HEM300
|
4.3
|
54.3
|
1.0
|
CB
|
B:PRO2
|
4.4
|
55.8
|
1.0
|
SG
|
A:CYS75
|
4.9
|
49.7
|
1.0
|
N
|
B:PRO3
|
5.0
|
57.9
|
1.0
|
|
Iron binding site 2 out
of 2 in 1ft9
Go back to
Iron Binding Sites List in 1ft9
Iron binding site 2 out
of 2 in the Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Reduced (Feii) Co-Sensing Protein From R. Rubrum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe300
b:47.0
occ:1.00
|
FE
|
B:HEM300
|
0.0
|
47.0
|
1.0
|
NC
|
B:HEM300
|
1.9
|
42.6
|
1.0
|
NA
|
B:HEM300
|
2.0
|
46.5
|
1.0
|
ND
|
B:HEM300
|
2.0
|
50.4
|
1.0
|
NB
|
B:HEM300
|
2.0
|
46.2
|
1.0
|
NE2
|
B:HIS77
|
2.1
|
47.1
|
1.0
|
N
|
A:PRO2
|
2.1
|
46.8
|
1.0
|
C4C
|
B:HEM300
|
3.0
|
49.1
|
1.0
|
C1C
|
B:HEM300
|
3.0
|
46.5
|
1.0
|
C1A
|
B:HEM300
|
3.0
|
50.1
|
1.0
|
C4A
|
B:HEM300
|
3.0
|
50.4
|
1.0
|
CD2
|
B:HIS77
|
3.0
|
46.7
|
1.0
|
C1D
|
B:HEM300
|
3.0
|
49.5
|
1.0
|
CD
|
A:PRO2
|
3.0
|
47.1
|
1.0
|
C4D
|
B:HEM300
|
3.1
|
52.5
|
1.0
|
C1B
|
B:HEM300
|
3.1
|
46.5
|
1.0
|
C4B
|
B:HEM300
|
3.1
|
45.2
|
1.0
|
CE1
|
B:HIS77
|
3.2
|
43.9
|
1.0
|
CA
|
A:PRO2
|
3.3
|
48.1
|
1.0
|
CHD
|
B:HEM300
|
3.4
|
49.7
|
1.0
|
CHC
|
B:HEM300
|
3.4
|
45.1
|
1.0
|
CHA
|
B:HEM300
|
3.4
|
51.6
|
1.0
|
CHB
|
B:HEM300
|
3.4
|
48.9
|
1.0
|
CG
|
A:PRO2
|
4.0
|
50.0
|
1.0
|
C
|
A:PRO2
|
4.1
|
49.4
|
1.0
|
CG
|
B:HIS77
|
4.2
|
48.3
|
1.0
|
C2A
|
B:HEM300
|
4.2
|
53.9
|
1.0
|
C3A
|
B:HEM300
|
4.2
|
51.1
|
1.0
|
C2C
|
B:HEM300
|
4.2
|
49.9
|
1.0
|
C3C
|
B:HEM300
|
4.2
|
50.6
|
1.0
|
ND1
|
B:HIS77
|
4.2
|
46.6
|
1.0
|
O
|
A:PRO2
|
4.2
|
45.8
|
1.0
|
C2D
|
B:HEM300
|
4.3
|
55.0
|
1.0
|
C2B
|
B:HEM300
|
4.3
|
47.5
|
1.0
|
C3D
|
B:HEM300
|
4.3
|
58.0
|
1.0
|
C3B
|
B:HEM300
|
4.3
|
47.7
|
1.0
|
CB
|
A:PRO2
|
4.4
|
47.9
|
1.0
|
SG
|
B:CYS75
|
4.8
|
53.5
|
1.0
|
O
|
A:HOH325
|
4.9
|
72.0
|
1.0
|
|
Reference:
W.N.Lanzilotta,
D.J.Schuller,
M.V.Thorsteinsson,
R.L.Kerby,
G.P.Roberts,
T.L.Poulos.
Structure of the Co Sensing Transcription Activator Cooa. Nat.Struct.Biol. V. 7 876 2000.
ISSN: ISSN 1072-8368
PubMed: 11017196
DOI: 10.1038/82820
Page generated: Sat Aug 3 05:28:37 2024
|