Atomistry » Iron » PDB 1gem-1gwe » 1gge
Atomistry »
  Iron »
    PDB 1gem-1gwe »
      1gge »

Iron in PDB 1gge: Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.

Enzymatic activity of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.

All present enzymatic activity of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.:
1.11.1.6;

Protein crystallography data

The structure of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution., PDB code: 1gge was solved by W.R.Melik-Adamyan, J.Bravo, X.Carpena, J.Switala, M.J.Mate, I.Fita, P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.60 / 1.89
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.040, 132.340, 121.200, 90.00, 109.63, 90.00
R / Rfree (%) 16.3 / 20.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution. (pdb code 1gge). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution., PDB code: 1gge:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1gge

Go back to Iron Binding Sites List in 1gge
Iron binding site 1 out of 4 in the Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe760

b:7.2
occ:1.00
FE A:HDD760 0.0 7.2 1.0
NC A:HDD760 2.0 5.7 1.0
NA A:HDD760 2.1 5.8 1.0
OH A:TYR415 2.1 7.2 1.0
NB A:HDD760 2.1 3.4 1.0
ND A:HDD760 2.1 5.3 1.0
O A:HOH1417 2.4 40.0 1.0
C4C A:HDD760 2.9 5.3 1.0
C1C A:HDD760 3.0 5.5 1.0
C1D A:HDD760 3.0 6.0 1.0
C4B A:HDD760 3.0 5.3 1.0
CZ A:TYR415 3.0 6.0 1.0
C1A A:HDD760 3.1 5.7 1.0
C4A A:HDD760 3.1 4.8 1.0
C1B A:HDD760 3.1 4.8 1.0
C4D A:HDD760 3.2 6.0 1.0
CHA A:HDD760 3.4 5.8 1.0
CHC A:HDD760 3.5 4.7 1.0
CHD A:HDD760 3.5 5.4 1.0
CHB A:HDD760 3.5 4.6 1.0
CE1 A:TYR415 3.6 5.8 1.0
CE2 A:TYR415 3.9 5.5 1.0
NE A:ARG411 4.1 3.4 1.0
C3C A:HDD760 4.1 5.5 1.0
C3B A:HDD760 4.2 4.6 1.0
C2C A:HDD760 4.2 5.2 1.0
NH2 A:ARG411 4.3 3.1 1.0
C2A A:HDD760 4.3 5.2 1.0
C2D A:HDD760 4.3 6.2 1.0
C2B A:HDD760 4.3 5.6 1.0
C3A A:HDD760 4.4 5.3 1.0
C3D A:HDD760 4.4 6.5 1.0
CZ A:ARG411 4.5 3.3 1.0
NE2 A:HIS128 4.7 5.0 1.0
CG2 A:VAL127 4.7 5.1 1.0
CZ A:PHE214 4.7 5.2 1.0
CD2 A:HIS128 4.7 4.7 1.0
O A:HOH1037 4.8 15.3 1.0
CD1 A:TYR415 4.9 6.4 1.0

Iron binding site 2 out of 4 in 1gge

Go back to Iron Binding Sites List in 1gge
Iron binding site 2 out of 4 in the Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe760

b:7.6
occ:1.00
FE B:HDD760 0.0 7.6 1.0
OH B:TYR415 2.0 7.0 1.0
NC B:HDD760 2.0 5.7 1.0
NB B:HDD760 2.1 5.9 1.0
NA B:HDD760 2.1 6.3 1.0
ND B:HDD760 2.1 6.8 1.0
O B:HOH1380 2.4 28.1 1.0
C1D B:HDD760 2.9 7.0 1.0
CZ B:TYR415 2.9 6.4 1.0
C4C B:HDD760 3.0 5.1 1.0
C1C B:HDD760 3.0 5.4 1.0
C4B B:HDD760 3.0 6.6 1.0
C1B B:HDD760 3.1 5.9 1.0
C1A B:HDD760 3.1 5.9 1.0
C4A B:HDD760 3.1 5.2 1.0
C4D B:HDD760 3.2 7.4 1.0
CHD B:HDD760 3.4 6.9 1.0
CHC B:HDD760 3.5 6.0 1.0
CHB B:HDD760 3.5 5.1 1.0
CHA B:HDD760 3.5 7.1 1.0
CE1 B:TYR415 3.5 6.4 1.0
CE2 B:TYR415 3.9 6.8 1.0
NE B:ARG411 4.1 4.5 1.0
C3B B:HDD760 4.2 6.5 1.0
C3C B:HDD760 4.2 5.5 1.0
C2C B:HDD760 4.2 5.4 1.0
NH2 B:ARG411 4.3 4.0 1.0
C2D B:HDD760 4.3 8.1 1.0
C2A B:HDD760 4.3 5.8 1.0
C2B B:HDD760 4.3 6.4 1.0
C3D B:HDD760 4.4 8.5 1.0
C3A B:HDD760 4.4 5.3 1.0
CZ B:ARG411 4.6 5.5 1.0
CZ B:PHE214 4.7 7.3 1.0
O B:HOH1089 4.7 17.4 1.0
NE2 B:HIS128 4.7 7.4 1.0
CG2 B:VAL127 4.7 4.9 1.0
CD2 B:HIS128 4.8 5.8 1.0
CD1 B:TYR415 4.8 6.4 1.0

Iron binding site 3 out of 4 in 1gge

Go back to Iron Binding Sites List in 1gge
Iron binding site 3 out of 4 in the Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe760

b:7.9
occ:1.00
FE C:HDD760 0.0 7.9 1.0
NC C:HDD760 2.0 6.9 1.0
OH C:TYR415 2.0 5.1 1.0
NA C:HDD760 2.0 6.5 1.0
ND C:HDD760 2.1 7.0 1.0
NB C:HDD760 2.1 7.3 1.0
O C:HOH1396 2.6 42.6 1.0
C4C C:HDD760 3.0 6.6 1.0
CZ C:TYR415 3.0 6.1 1.0
C1D C:HDD760 3.0 7.5 1.0
C1C C:HDD760 3.0 7.1 1.0
C4B C:HDD760 3.0 7.3 1.0
C1A C:HDD760 3.0 7.1 1.0
C4A C:HDD760 3.1 6.4 1.0
C1B C:HDD760 3.1 6.8 1.0
C4D C:HDD760 3.2 8.1 1.0
CHA C:HDD760 3.4 8.0 1.0
CHD C:HDD760 3.5 6.8 1.0
CHC C:HDD760 3.5 7.5 1.0
CHB C:HDD760 3.5 6.2 1.0
CE1 C:TYR415 3.6 6.0 1.0
CE2 C:TYR415 3.9 6.6 1.0
NE C:ARG411 4.1 4.3 1.0
C3C C:HDD760 4.2 7.8 1.0
C3B C:HDD760 4.2 7.1 1.0
C2C C:HDD760 4.2 7.7 1.0
NH2 C:ARG411 4.2 4.9 1.0
C2A C:HDD760 4.3 6.8 1.0
C2D C:HDD760 4.3 8.1 1.0
C2B C:HDD760 4.3 7.3 1.0
C3A C:HDD760 4.4 6.4 1.0
C3D C:HDD760 4.4 9.0 1.0
CZ C:ARG411 4.6 4.4 1.0
NE2 C:HIS128 4.6 6.2 1.0
CG2 C:VAL127 4.6 5.3 1.0
CD2 C:HIS128 4.7 5.1 1.0
CZ C:PHE214 4.7 5.4 1.0
O C:HOH1131 4.8 16.5 1.0
CD1 C:TYR415 4.9 6.2 1.0

Iron binding site 4 out of 4 in 1gge

Go back to Iron Binding Sites List in 1gge
Iron binding site 4 out of 4 in the Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Catalase Hpii From Escherichia Coli, Native Structure at 1.9 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe760

b:8.2
occ:1.00
FE D:HDD760 0.0 8.2 1.0
OH D:TYR415 2.0 5.8 1.0
NA D:HDD760 2.0 5.5 1.0
NB D:HDD760 2.1 5.5 1.0
ND D:HDD760 2.1 6.2 1.0
NC D:HDD760 2.2 5.4 1.0
CZ D:TYR415 3.0 4.9 1.0
C1D D:HDD760 3.0 6.3 1.0
C1A D:HDD760 3.0 5.7 1.0
C1B D:HDD760 3.0 5.6 1.0
C4C D:HDD760 3.0 3.4 1.0
C4A D:HDD760 3.1 4.7 1.0
C4B D:HDD760 3.1 6.0 1.0
C1C D:HDD760 3.1 5.3 1.0
C4D D:HDD760 3.1 5.9 1.0
CHA D:HDD760 3.4 5.6 1.0
CHB D:HDD760 3.4 3.6 1.0
CHD D:HDD760 3.5 5.9 1.0
CHC D:HDD760 3.5 5.7 1.0
CE1 D:TYR415 3.6 5.0 1.0
CE2 D:TYR415 3.9 5.4 1.0
NE D:ARG411 4.0 5.2 1.0
NH2 D:ARG411 4.1 5.3 1.0
C3B D:HDD760 4.2 6.6 1.0
C2A D:HDD760 4.2 5.4 1.0
C3C D:HDD760 4.3 5.4 1.0
C2B D:HDD760 4.3 5.8 1.0
C2D D:HDD760 4.3 7.6 1.0
C3A D:HDD760 4.3 5.2 1.0
C2C D:HDD760 4.3 5.5 1.0
C3D D:HDD760 4.4 8.1 1.0
CZ D:ARG411 4.5 6.3 1.0
O D:HOH911 4.6 12.9 1.0
NE2 D:HIS128 4.7 5.5 1.0
CG2 D:VAL127 4.7 5.0 1.0
CZ D:PHE214 4.7 4.6 1.0
CD2 D:HIS128 4.7 5.4 1.0
CD1 D:TYR415 4.9 4.4 1.0

Reference:

W.Melik-Adamyan, J.Bravo, X.Carpena, J.Switala, M.J.Mate, I.Fita, P.C.Loewen. Substrate Flow in Catalases Deduced From the Crystal Structures of Active Site Variants of Hpii From Escherichia Coli. Proteins V. 44 270 2001.
ISSN: ISSN 0887-3585
PubMed: 11455600
DOI: 10.1002/PROT.1092
Page generated: Sun Dec 13 14:15:29 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy