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Iron in PDB 1gqa: Cytochrome C' From Rhodobacter Spheriodes

Protein crystallography data

The structure of Cytochrome C' From Rhodobacter Spheriodes, PDB code: 1gqa was solved by K.A.Kantardjieff, B.Rupp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.80
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 48.100, 48.100, 115.798, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 25.4

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome C' From Rhodobacter Spheriodes (pdb code 1gqa). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cytochrome C' From Rhodobacter Spheriodes, PDB code: 1gqa:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1gqa

Go back to Iron Binding Sites List in 1gqa
Iron binding site 1 out of 2 in the Cytochrome C' From Rhodobacter Spheriodes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome C' From Rhodobacter Spheriodes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe131

b:13.5
occ:1.00
FE A:HEC131 0.0 13.5 1.0
NE2 A:HIS123 1.9 13.0 1.0
NC A:HEC131 2.1 12.7 1.0
NB A:HEC131 2.2 11.2 1.0
NA A:HEC131 2.2 14.3 1.0
ND A:HEC131 2.3 13.1 1.0
CE1 A:HIS123 2.9 13.4 1.0
CD2 A:HIS123 3.0 14.6 1.0
C4A A:HEC131 3.1 14.2 1.0
C1A A:HEC131 3.1 15.6 1.0
C4D A:HEC131 3.1 12.5 1.0
C1C A:HEC131 3.1 11.3 1.0
C1D A:HEC131 3.1 13.2 1.0
C4C A:HEC131 3.1 13.1 1.0
C1B A:HEC131 3.2 11.9 1.0
C4B A:HEC131 3.2 11.8 1.0
CD1 A:PHE14 3.4 14.4 1.0
CHA A:HEC131 3.4 14.7 1.0
CHD A:HEC131 3.4 12.4 1.0
CHB A:HEC131 3.4 14.6 1.0
CHC A:HEC131 3.4 10.7 1.0
CE1 A:PHE14 3.6 15.6 1.0
CG A:PHE14 4.0 14.0 1.0
ND1 A:HIS123 4.0 14.9 1.0
CG A:HIS123 4.1 13.9 1.0
C2A A:HEC131 4.3 17.2 1.0
C3A A:HEC131 4.3 16.9 1.0
C3C A:HEC131 4.3 12.1 1.0
C2C A:HEC131 4.3 12.0 1.0
C3D A:HEC131 4.3 13.3 1.0
C2D A:HEC131 4.3 13.4 1.0
C2B A:HEC131 4.4 11.7 1.0
C3B A:HEC131 4.4 9.8 1.0
CZ A:PHE14 4.4 13.6 1.0
NH2 A:ARG127 4.5 19.5 1.0
CB A:PHE14 4.6 13.6 1.0
CD2 A:PHE14 4.7 14.4 1.0
CE2 A:PHE14 4.9 13.8 1.0

Iron binding site 2 out of 2 in 1gqa

Go back to Iron Binding Sites List in 1gqa
Iron binding site 2 out of 2 in the Cytochrome C' From Rhodobacter Spheriodes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome C' From Rhodobacter Spheriodes within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe131

b:14.2
occ:1.00
FE D:HEC131 0.0 14.2 1.0
NE2 D:HIS123 2.0 13.4 1.0
NC D:HEC131 2.1 13.5 1.0
NB D:HEC131 2.2 13.2 1.0
NA D:HEC131 2.2 14.2 1.0
ND D:HEC131 2.2 12.6 1.0
CE1 D:HIS123 2.9 11.0 1.0
C1D D:HEC131 3.1 12.8 1.0
C4D D:HEC131 3.1 12.9 1.0
C4C D:HEC131 3.1 12.7 1.0
CD2 D:HIS123 3.1 13.2 1.0
C1C D:HEC131 3.1 10.8 1.0
C4A D:HEC131 3.1 14.2 1.0
C1A D:HEC131 3.1 15.7 1.0
C1B D:HEC131 3.1 12.4 1.0
C4B D:HEC131 3.2 12.7 1.0
CD1 D:PHE14 3.2 14.7 1.0
CHD D:HEC131 3.4 12.1 1.0
CHC D:HEC131 3.4 12.6 1.0
CHB D:HEC131 3.4 13.7 1.0
CHA D:HEC131 3.5 14.9 1.0
CE1 D:PHE14 3.5 14.6 1.0
CG D:PHE14 3.8 14.6 1.0
ND1 D:HIS123 4.1 13.1 1.0
CG D:HIS123 4.2 14.7 1.0
CZ D:PHE14 4.2 13.2 1.0
C3C D:HEC131 4.3 12.6 1.0
C3D D:HEC131 4.3 13.5 1.0
C2C D:HEC131 4.3 13.5 1.0
C2D D:HEC131 4.3 12.6 1.0
C2A D:HEC131 4.3 17.4 1.0
C3A D:HEC131 4.3 16.9 1.0
C3B D:HEC131 4.3 11.3 1.0
C2B D:HEC131 4.3 12.1 1.0
CB D:PHE14 4.4 13.3 1.0
CD2 D:PHE14 4.5 14.5 1.0
CE2 D:PHE14 4.7 14.5 1.0
NH2 D:ARG127 4.8 23.7 1.0

Reference:

L.M.Ramirez, H.L.Axelrod, S.R.Herron, B.Rupp, J.P.Allen, K.A.Kantardjieff. High Resolution Crystal Structure of Ferricytochrome C' From Rhodobacter Sphaeroides J.Chem.Cryst. V. 33 413 2003.
ISSN: ISSN 1074-1542
Page generated: Sun Dec 13 14:15:49 2020

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