Iron in PDB 1gu6: Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Protein crystallography data
The structure of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli, PDB code: 1gu6
was solved by
V.A.Bamford,
H.C.Angove,
H.E.Seward,
A.J.Thomson,
J.A.Cole,
J.N.Butt,
A.M.Hemmings,
D.J.Richardson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20 /
2.5
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.472,
90.837,
293.874,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.3 /
24.3
|
Other elements in 1gu6:
The structure of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Iron atom in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
(pdb code 1gu6). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the
Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli, PDB code: 1gu6:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 1 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1482
b:27.3
occ:1.00
|
FE
|
A:HEC1482
|
0.0
|
27.3
|
1.0
|
NA
|
A:HEC1482
|
2.0
|
30.3
|
1.0
|
ND
|
A:HEC1482
|
2.0
|
26.5
|
1.0
|
NB
|
A:HEC1482
|
2.0
|
27.8
|
1.0
|
NC
|
A:HEC1482
|
2.0
|
28.0
|
1.0
|
NZ
|
A:LYS126
|
2.1
|
20.9
|
1.0
|
O
|
A:HOH2156
|
2.2
|
42.3
|
1.0
|
C4D
|
A:HEC1482
|
3.0
|
27.6
|
1.0
|
C4A
|
A:HEC1482
|
3.0
|
30.5
|
1.0
|
C1D
|
A:HEC1482
|
3.0
|
27.0
|
1.0
|
C1A
|
A:HEC1482
|
3.0
|
29.2
|
1.0
|
C1B
|
A:HEC1482
|
3.0
|
29.6
|
1.0
|
C4C
|
A:HEC1482
|
3.0
|
28.3
|
1.0
|
C4B
|
A:HEC1482
|
3.1
|
28.3
|
1.0
|
C1C
|
A:HEC1482
|
3.1
|
29.3
|
1.0
|
CE
|
A:LYS126
|
3.1
|
26.9
|
1.0
|
CHA
|
A:HEC1482
|
3.4
|
27.1
|
1.0
|
CHB
|
A:HEC1482
|
3.4
|
29.2
|
1.0
|
CHD
|
A:HEC1482
|
3.4
|
28.7
|
1.0
|
CHC
|
A:HEC1482
|
3.5
|
29.9
|
1.0
|
C3D
|
A:HEC1482
|
4.2
|
28.5
|
1.0
|
C2A
|
A:HEC1482
|
4.3
|
28.2
|
1.0
|
C3A
|
A:HEC1482
|
4.3
|
30.1
|
1.0
|
C2D
|
A:HEC1482
|
4.3
|
28.4
|
1.0
|
C2B
|
A:HEC1482
|
4.3
|
29.1
|
1.0
|
C3C
|
A:HEC1482
|
4.3
|
27.9
|
1.0
|
C3B
|
A:HEC1482
|
4.3
|
29.1
|
1.0
|
C2C
|
A:HEC1482
|
4.3
|
27.7
|
1.0
|
O
|
A:HOH2041
|
4.3
|
38.6
|
1.0
|
NE2
|
A:HIS264
|
4.5
|
27.1
|
1.0
|
CD
|
A:LYS126
|
4.5
|
25.1
|
1.0
|
O
|
A:HOH2071
|
4.9
|
45.0
|
1.0
|
|
Iron binding site 2 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 2 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1483
b:32.6
occ:1.00
|
FE
|
A:HEC1483
|
0.0
|
32.6
|
1.0
|
NC
|
A:HEC1483
|
2.0
|
34.0
|
1.0
|
NE2
|
A:HIS301
|
2.0
|
22.2
|
1.0
|
ND
|
A:HEC1483
|
2.0
|
35.3
|
1.0
|
NB
|
A:HEC1483
|
2.0
|
35.2
|
1.0
|
NA
|
A:HEC1483
|
2.0
|
36.0
|
1.0
|
NE2
|
A:HIS164
|
2.0
|
29.8
|
1.0
|
CE1
|
A:HIS301
|
2.9
|
26.9
|
1.0
|
CD2
|
A:HIS164
|
2.9
|
30.8
|
1.0
|
C4C
|
A:HEC1483
|
3.0
|
33.6
|
1.0
|
C1D
|
A:HEC1483
|
3.0
|
33.9
|
1.0
|
C4D
|
A:HEC1483
|
3.0
|
35.8
|
1.0
|
C1C
|
A:HEC1483
|
3.0
|
33.7
|
1.0
|
C4A
|
A:HEC1483
|
3.1
|
36.2
|
1.0
|
C1B
|
A:HEC1483
|
3.1
|
35.8
|
1.0
|
C4B
|
A:HEC1483
|
3.1
|
34.9
|
1.0
|
C1A
|
A:HEC1483
|
3.1
|
36.9
|
1.0
|
CE1
|
A:HIS164
|
3.1
|
31.1
|
1.0
|
CD2
|
A:HIS301
|
3.1
|
28.4
|
1.0
|
CHD
|
A:HEC1483
|
3.4
|
33.0
|
1.0
|
CHB
|
A:HEC1483
|
3.4
|
36.3
|
1.0
|
CHA
|
A:HEC1483
|
3.4
|
36.8
|
1.0
|
CHC
|
A:HEC1483
|
3.4
|
34.4
|
1.0
|
ND1
|
A:HIS301
|
4.0
|
25.7
|
1.0
|
CG
|
A:HIS164
|
4.1
|
32.5
|
1.0
|
ND1
|
A:HIS164
|
4.1
|
30.2
|
1.0
|
CG
|
A:HIS301
|
4.2
|
25.5
|
1.0
|
C3C
|
A:HEC1483
|
4.2
|
32.5
|
1.0
|
C2C
|
A:HEC1483
|
4.3
|
33.0
|
1.0
|
C2D
|
A:HEC1483
|
4.3
|
32.6
|
1.0
|
C3D
|
A:HEC1483
|
4.3
|
34.3
|
1.0
|
C2A
|
A:HEC1483
|
4.3
|
36.2
|
1.0
|
C3A
|
A:HEC1483
|
4.3
|
38.1
|
1.0
|
C2B
|
A:HEC1483
|
4.3
|
35.7
|
1.0
|
C3B
|
A:HEC1483
|
4.3
|
35.5
|
1.0
|
CE
|
A:MET287
|
4.8
|
31.2
|
1.0
|
|
Iron binding site 3 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 3 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1484
b:24.7
occ:1.00
|
FE
|
A:HEC1484
|
0.0
|
24.7
|
1.0
|
ND
|
A:HEC1484
|
2.0
|
26.4
|
1.0
|
NA
|
A:HEC1484
|
2.0
|
25.9
|
1.0
|
NB
|
A:HEC1484
|
2.0
|
26.5
|
1.0
|
NC
|
A:HEC1484
|
2.0
|
23.8
|
1.0
|
NE2
|
A:HIS213
|
2.1
|
20.6
|
1.0
|
NE2
|
A:HIS94
|
2.1
|
32.9
|
1.0
|
C4D
|
A:HEC1484
|
3.0
|
27.2
|
1.0
|
CE1
|
A:HIS213
|
3.0
|
19.6
|
1.0
|
C1B
|
A:HEC1484
|
3.0
|
26.5
|
1.0
|
C4A
|
A:HEC1484
|
3.0
|
26.5
|
1.0
|
C1D
|
A:HEC1484
|
3.0
|
25.4
|
1.0
|
C1A
|
A:HEC1484
|
3.0
|
27.4
|
1.0
|
C4B
|
A:HEC1484
|
3.0
|
26.1
|
1.0
|
C4C
|
A:HEC1484
|
3.0
|
27.8
|
1.0
|
C1C
|
A:HEC1484
|
3.0
|
25.6
|
1.0
|
CD2
|
A:HIS213
|
3.1
|
18.9
|
1.0
|
CD2
|
A:HIS94
|
3.1
|
32.0
|
1.0
|
CE1
|
A:HIS94
|
3.1
|
32.7
|
1.0
|
CHA
|
A:HEC1484
|
3.4
|
27.2
|
1.0
|
CHB
|
A:HEC1484
|
3.4
|
27.2
|
1.0
|
CHD
|
A:HEC1484
|
3.4
|
27.3
|
1.0
|
CHC
|
A:HEC1484
|
3.4
|
26.3
|
1.0
|
ND1
|
A:HIS213
|
4.1
|
20.8
|
1.0
|
CG
|
A:HIS213
|
4.2
|
21.6
|
1.0
|
ND1
|
A:HIS94
|
4.2
|
31.8
|
1.0
|
CG
|
A:HIS94
|
4.2
|
30.9
|
1.0
|
C3D
|
A:HEC1484
|
4.3
|
27.6
|
1.0
|
C2A
|
A:HEC1484
|
4.3
|
25.7
|
1.0
|
C3A
|
A:HEC1484
|
4.3
|
24.0
|
1.0
|
C2B
|
A:HEC1484
|
4.3
|
28.4
|
1.0
|
C2D
|
A:HEC1484
|
4.3
|
27.3
|
1.0
|
C3B
|
A:HEC1484
|
4.3
|
27.6
|
1.0
|
C3C
|
A:HEC1484
|
4.3
|
27.1
|
1.0
|
C2C
|
A:HEC1484
|
4.3
|
26.6
|
1.0
|
|
Iron binding site 4 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 4 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1485
b:24.7
occ:1.00
|
FE
|
A:HEC1485
|
0.0
|
24.7
|
1.0
|
ND
|
A:HEC1485
|
2.0
|
26.0
|
1.0
|
NC
|
A:HEC1485
|
2.0
|
25.6
|
1.0
|
NB
|
A:HEC1485
|
2.0
|
26.3
|
1.0
|
NA
|
A:HEC1485
|
2.0
|
25.1
|
1.0
|
NE2
|
A:HIS286
|
2.0
|
18.4
|
1.0
|
NE2
|
A:HIS393
|
2.1
|
29.4
|
1.0
|
CE1
|
A:HIS286
|
2.9
|
22.3
|
1.0
|
C4D
|
A:HEC1485
|
3.0
|
26.0
|
1.0
|
C1D
|
A:HEC1485
|
3.0
|
28.0
|
1.0
|
CE1
|
A:HIS393
|
3.0
|
28.4
|
1.0
|
C4C
|
A:HEC1485
|
3.0
|
25.4
|
1.0
|
C1B
|
A:HEC1485
|
3.0
|
27.9
|
1.0
|
C4B
|
A:HEC1485
|
3.0
|
25.2
|
1.0
|
C1A
|
A:HEC1485
|
3.1
|
27.8
|
1.0
|
C1C
|
A:HEC1485
|
3.1
|
25.9
|
1.0
|
C4A
|
A:HEC1485
|
3.1
|
25.4
|
1.0
|
CD2
|
A:HIS286
|
3.1
|
21.3
|
1.0
|
CD2
|
A:HIS393
|
3.2
|
28.9
|
1.0
|
CHD
|
A:HEC1485
|
3.4
|
28.0
|
1.0
|
CHA
|
A:HEC1485
|
3.4
|
25.5
|
1.0
|
CHB
|
A:HEC1485
|
3.4
|
25.8
|
1.0
|
CHC
|
A:HEC1485
|
3.4
|
24.8
|
1.0
|
ND1
|
A:HIS286
|
4.1
|
20.2
|
1.0
|
ND1
|
A:HIS393
|
4.1
|
26.3
|
1.0
|
CG
|
A:HIS286
|
4.2
|
22.5
|
1.0
|
C3D
|
A:HEC1485
|
4.2
|
27.9
|
1.0
|
C2D
|
A:HEC1485
|
4.2
|
27.6
|
1.0
|
C3C
|
A:HEC1485
|
4.2
|
24.9
|
1.0
|
CG
|
A:HIS393
|
4.3
|
28.0
|
1.0
|
C3B
|
A:HEC1485
|
4.3
|
26.9
|
1.0
|
C2B
|
A:HEC1485
|
4.3
|
27.1
|
1.0
|
C2C
|
A:HEC1485
|
4.3
|
24.9
|
1.0
|
C3A
|
A:HEC1485
|
4.3
|
26.0
|
1.0
|
C2A
|
A:HEC1485
|
4.3
|
28.3
|
1.0
|
|
Iron binding site 5 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 5 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1486
b:26.6
occ:1.00
|
FE
|
A:HEC1486
|
0.0
|
26.6
|
1.0
|
ND
|
A:HEC1486
|
2.0
|
30.6
|
1.0
|
NC
|
A:HEC1486
|
2.0
|
29.0
|
1.0
|
NB
|
A:HEC1486
|
2.0
|
27.9
|
1.0
|
NA
|
A:HEC1486
|
2.0
|
31.6
|
1.0
|
NE2
|
A:HIS318
|
2.0
|
34.2
|
1.0
|
NE2
|
A:HIS275
|
2.1
|
27.9
|
1.0
|
CE1
|
A:HIS318
|
3.0
|
32.0
|
1.0
|
C1D
|
A:HEC1486
|
3.0
|
30.1
|
1.0
|
C4D
|
A:HEC1486
|
3.0
|
32.7
|
1.0
|
CD2
|
A:HIS318
|
3.0
|
32.1
|
1.0
|
C4C
|
A:HEC1486
|
3.0
|
30.4
|
1.0
|
C1B
|
A:HEC1486
|
3.0
|
28.8
|
1.0
|
C4B
|
A:HEC1486
|
3.0
|
29.2
|
1.0
|
C1C
|
A:HEC1486
|
3.0
|
28.0
|
1.0
|
C1A
|
A:HEC1486
|
3.1
|
32.8
|
1.0
|
C4A
|
A:HEC1486
|
3.1
|
32.1
|
1.0
|
CD2
|
A:HIS275
|
3.1
|
29.4
|
1.0
|
CE1
|
A:HIS275
|
3.1
|
28.4
|
1.0
|
CHD
|
A:HEC1486
|
3.4
|
29.6
|
1.0
|
CHA
|
A:HEC1486
|
3.4
|
31.7
|
1.0
|
CHC
|
A:HEC1486
|
3.4
|
29.8
|
1.0
|
CHB
|
A:HEC1486
|
3.4
|
30.7
|
1.0
|
ND1
|
A:HIS318
|
4.1
|
29.9
|
1.0
|
CG
|
A:HIS318
|
4.1
|
31.7
|
1.0
|
ND1
|
A:HIS275
|
4.2
|
30.8
|
1.0
|
CG
|
A:HIS275
|
4.2
|
31.1
|
1.0
|
C3C
|
A:HEC1486
|
4.2
|
31.1
|
1.0
|
C2D
|
A:HEC1486
|
4.2
|
32.3
|
1.0
|
C3D
|
A:HEC1486
|
4.3
|
32.4
|
1.0
|
C2B
|
A:HEC1486
|
4.3
|
28.6
|
1.0
|
C2C
|
A:HEC1486
|
4.3
|
29.7
|
1.0
|
C3B
|
A:HEC1486
|
4.3
|
28.8
|
1.0
|
C2A
|
A:HEC1486
|
4.3
|
34.4
|
1.0
|
C3A
|
A:HEC1486
|
4.3
|
33.5
|
1.0
|
CBC
|
A:HEC1485
|
4.8
|
25.3
|
1.0
|
|
Iron binding site 6 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 6 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1482
b:32.4
occ:1.00
|
FE
|
C:HEC1482
|
0.0
|
32.4
|
1.0
|
NC
|
C:HEC1482
|
2.0
|
30.4
|
1.0
|
ND
|
C:HEC1482
|
2.0
|
29.8
|
1.0
|
NB
|
C:HEC1482
|
2.0
|
29.2
|
1.0
|
NA
|
C:HEC1482
|
2.0
|
28.6
|
1.0
|
NZ
|
C:LYS126
|
2.2
|
25.9
|
1.0
|
O
|
C:HOH2119
|
2.2
|
40.6
|
1.0
|
C4C
|
C:HEC1482
|
3.0
|
30.8
|
1.0
|
C1D
|
C:HEC1482
|
3.0
|
30.5
|
1.0
|
C1C
|
C:HEC1482
|
3.0
|
32.6
|
1.0
|
C4B
|
C:HEC1482
|
3.0
|
31.1
|
1.0
|
C4D
|
C:HEC1482
|
3.0
|
30.9
|
1.0
|
C4A
|
C:HEC1482
|
3.1
|
30.0
|
1.0
|
C1B
|
C:HEC1482
|
3.1
|
28.9
|
1.0
|
C1A
|
C:HEC1482
|
3.1
|
29.8
|
1.0
|
CE
|
C:LYS126
|
3.2
|
28.0
|
1.0
|
CHD
|
C:HEC1482
|
3.4
|
30.9
|
1.0
|
CHC
|
C:HEC1482
|
3.4
|
33.7
|
1.0
|
CHB
|
C:HEC1482
|
3.4
|
31.5
|
1.0
|
O
|
C:HOH2063
|
3.4
|
50.1
|
1.0
|
CHA
|
C:HEC1482
|
3.4
|
28.2
|
1.0
|
C3C
|
C:HEC1482
|
4.3
|
31.9
|
1.0
|
O
|
C:HOH2030
|
4.3
|
40.8
|
1.0
|
C2C
|
C:HEC1482
|
4.3
|
33.2
|
1.0
|
C3D
|
C:HEC1482
|
4.3
|
31.6
|
1.0
|
C2A
|
C:HEC1482
|
4.3
|
29.4
|
1.0
|
C3B
|
C:HEC1482
|
4.3
|
30.1
|
1.0
|
C2D
|
C:HEC1482
|
4.3
|
30.6
|
1.0
|
C2B
|
C:HEC1482
|
4.3
|
29.2
|
1.0
|
C3A
|
C:HEC1482
|
4.3
|
29.7
|
1.0
|
NE2
|
C:HIS264
|
4.5
|
31.0
|
1.0
|
CD
|
C:LYS126
|
4.6
|
26.9
|
1.0
|
O
|
C:HOH2052
|
4.6
|
44.8
|
1.0
|
|
Iron binding site 7 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 7 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1483
b:39.1
occ:1.00
|
FE
|
C:HEC1483
|
0.0
|
39.1
|
1.0
|
NE2
|
C:HIS164
|
1.9
|
34.4
|
1.0
|
NB
|
C:HEC1483
|
2.0
|
39.1
|
1.0
|
NA
|
C:HEC1483
|
2.0
|
40.6
|
1.0
|
NC
|
C:HEC1483
|
2.0
|
39.2
|
1.0
|
ND
|
C:HEC1483
|
2.0
|
40.1
|
1.0
|
NE2
|
C:HIS301
|
2.0
|
27.3
|
1.0
|
CD2
|
C:HIS164
|
2.8
|
36.3
|
1.0
|
CE1
|
C:HIS301
|
2.9
|
33.3
|
1.0
|
CE1
|
C:HIS164
|
3.0
|
38.1
|
1.0
|
C1B
|
C:HEC1483
|
3.0
|
40.1
|
1.0
|
C4A
|
C:HEC1483
|
3.0
|
40.6
|
1.0
|
C4C
|
C:HEC1483
|
3.1
|
38.2
|
1.0
|
C1D
|
C:HEC1483
|
3.1
|
39.2
|
1.0
|
C4B
|
C:HEC1483
|
3.1
|
38.1
|
1.0
|
C4D
|
C:HEC1483
|
3.1
|
40.5
|
1.0
|
C1A
|
C:HEC1483
|
3.1
|
41.4
|
1.0
|
C1C
|
C:HEC1483
|
3.1
|
37.2
|
1.0
|
CD2
|
C:HIS301
|
3.2
|
32.5
|
1.0
|
CHB
|
C:HEC1483
|
3.4
|
40.4
|
1.0
|
CHD
|
C:HEC1483
|
3.4
|
38.5
|
1.0
|
CHA
|
C:HEC1483
|
3.5
|
41.6
|
1.0
|
CHC
|
C:HEC1483
|
3.5
|
38.1
|
1.0
|
CG
|
C:HIS164
|
4.0
|
37.1
|
1.0
|
ND1
|
C:HIS164
|
4.0
|
36.6
|
1.0
|
ND1
|
C:HIS301
|
4.1
|
34.8
|
1.0
|
CG
|
C:HIS301
|
4.2
|
32.9
|
1.0
|
C2B
|
C:HEC1483
|
4.3
|
39.0
|
1.0
|
C3C
|
C:HEC1483
|
4.3
|
37.6
|
1.0
|
C3A
|
C:HEC1483
|
4.3
|
40.6
|
1.0
|
C3B
|
C:HEC1483
|
4.3
|
36.9
|
1.0
|
C2A
|
C:HEC1483
|
4.3
|
40.2
|
1.0
|
C2C
|
C:HEC1483
|
4.3
|
37.3
|
1.0
|
C2D
|
C:HEC1483
|
4.3
|
38.4
|
1.0
|
C3D
|
C:HEC1483
|
4.4
|
38.2
|
1.0
|
CE
|
C:MET287
|
5.0
|
37.7
|
1.0
|
|
Iron binding site 8 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 8 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1484
b:30.9
occ:1.00
|
FE
|
C:HEC1484
|
0.0
|
30.9
|
1.0
|
ND
|
C:HEC1484
|
2.0
|
30.4
|
1.0
|
NA
|
C:HEC1484
|
2.0
|
28.9
|
1.0
|
NB
|
C:HEC1484
|
2.0
|
30.5
|
1.0
|
NC
|
C:HEC1484
|
2.0
|
29.1
|
1.0
|
NE2
|
C:HIS213
|
2.0
|
23.2
|
1.0
|
NE2
|
C:HIS94
|
2.1
|
31.2
|
1.0
|
C4D
|
C:HEC1484
|
3.0
|
30.5
|
1.0
|
CE1
|
C:HIS213
|
3.0
|
22.2
|
1.0
|
C1D
|
C:HEC1484
|
3.0
|
29.8
|
1.0
|
C1A
|
C:HEC1484
|
3.0
|
30.1
|
1.0
|
C4A
|
C:HEC1484
|
3.0
|
29.2
|
1.0
|
CD2
|
C:HIS213
|
3.0
|
24.2
|
1.0
|
CD2
|
C:HIS94
|
3.0
|
33.3
|
1.0
|
C1B
|
C:HEC1484
|
3.0
|
30.2
|
1.0
|
C4B
|
C:HEC1484
|
3.1
|
31.1
|
1.0
|
C4C
|
C:HEC1484
|
3.1
|
30.1
|
1.0
|
C1C
|
C:HEC1484
|
3.1
|
29.2
|
1.0
|
CE1
|
C:HIS94
|
3.1
|
31.3
|
1.0
|
CHA
|
C:HEC1484
|
3.4
|
31.2
|
1.0
|
CHB
|
C:HEC1484
|
3.4
|
29.8
|
1.0
|
CHD
|
C:HEC1484
|
3.4
|
29.3
|
1.0
|
CHC
|
C:HEC1484
|
3.4
|
30.7
|
1.0
|
ND1
|
C:HIS213
|
4.1
|
24.9
|
1.0
|
CG
|
C:HIS213
|
4.2
|
25.1
|
1.0
|
ND1
|
C:HIS94
|
4.2
|
33.7
|
1.0
|
CG
|
C:HIS94
|
4.2
|
34.0
|
1.0
|
C3A
|
C:HEC1484
|
4.3
|
27.3
|
1.0
|
C3D
|
C:HEC1484
|
4.3
|
30.9
|
1.0
|
C2A
|
C:HEC1484
|
4.3
|
28.9
|
1.0
|
C2D
|
C:HEC1484
|
4.3
|
30.7
|
1.0
|
C3C
|
C:HEC1484
|
4.3
|
30.2
|
1.0
|
C3B
|
C:HEC1484
|
4.3
|
31.0
|
1.0
|
C2B
|
C:HEC1484
|
4.3
|
30.2
|
1.0
|
C2C
|
C:HEC1484
|
4.3
|
29.7
|
1.0
|
|
Iron binding site 9 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 9 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1485
b:32.0
occ:1.00
|
FE
|
C:HEC1485
|
0.0
|
32.0
|
1.0
|
ND
|
C:HEC1485
|
2.0
|
28.8
|
1.0
|
NB
|
C:HEC1485
|
2.0
|
28.9
|
1.0
|
NE2
|
C:HIS286
|
2.0
|
24.8
|
1.0
|
NC
|
C:HEC1485
|
2.0
|
28.1
|
1.0
|
NA
|
C:HEC1485
|
2.0
|
29.3
|
1.0
|
NE2
|
C:HIS393
|
2.2
|
29.7
|
1.0
|
CE1
|
C:HIS286
|
2.9
|
23.0
|
1.0
|
C4D
|
C:HEC1485
|
3.0
|
29.5
|
1.0
|
C1D
|
C:HEC1485
|
3.0
|
29.6
|
1.0
|
C1B
|
C:HEC1485
|
3.0
|
30.1
|
1.0
|
C4C
|
C:HEC1485
|
3.0
|
28.8
|
1.0
|
C4B
|
C:HEC1485
|
3.0
|
30.4
|
1.0
|
CD2
|
C:HIS286
|
3.0
|
23.9
|
1.0
|
C4A
|
C:HEC1485
|
3.0
|
29.5
|
1.0
|
CE1
|
C:HIS393
|
3.0
|
27.7
|
1.0
|
C1C
|
C:HEC1485
|
3.1
|
29.6
|
1.0
|
C1A
|
C:HEC1485
|
3.1
|
31.3
|
1.0
|
CD2
|
C:HIS393
|
3.2
|
30.2
|
1.0
|
CHD
|
C:HEC1485
|
3.4
|
28.6
|
1.0
|
CHB
|
C:HEC1485
|
3.4
|
29.5
|
1.0
|
CHA
|
C:HEC1485
|
3.4
|
28.3
|
1.0
|
CHC
|
C:HEC1485
|
3.4
|
28.8
|
1.0
|
ND1
|
C:HIS286
|
4.0
|
23.7
|
1.0
|
CG
|
C:HIS286
|
4.1
|
27.0
|
1.0
|
ND1
|
C:HIS393
|
4.2
|
25.7
|
1.0
|
C3D
|
C:HEC1485
|
4.3
|
30.0
|
1.0
|
C3B
|
C:HEC1485
|
4.3
|
29.3
|
1.0
|
C2B
|
C:HEC1485
|
4.3
|
29.3
|
1.0
|
C2D
|
C:HEC1485
|
4.3
|
30.5
|
1.0
|
C3C
|
C:HEC1485
|
4.3
|
27.9
|
1.0
|
C2C
|
C:HEC1485
|
4.3
|
27.4
|
1.0
|
C3A
|
C:HEC1485
|
4.3
|
30.5
|
1.0
|
C2A
|
C:HEC1485
|
4.3
|
30.8
|
1.0
|
CG
|
C:HIS393
|
4.3
|
28.0
|
1.0
|
|
Iron binding site 10 out
of 20 in 1gu6
Go back to
Iron Binding Sites List in 1gu6
Iron binding site 10 out
of 20 in the Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1486
b:35.3
occ:1.00
|
FE
|
C:HEC1486
|
0.0
|
35.3
|
1.0
|
NB
|
C:HEC1486
|
2.0
|
29.9
|
1.0
|
NE2
|
C:HIS318
|
2.0
|
33.4
|
1.0
|
ND
|
C:HEC1486
|
2.0
|
33.5
|
1.0
|
NA
|
C:HEC1486
|
2.0
|
33.8
|
1.0
|
NC
|
C:HEC1486
|
2.0
|
33.6
|
1.0
|
NE2
|
C:HIS275
|
2.2
|
32.2
|
1.0
|
CE1
|
C:HIS318
|
2.9
|
34.4
|
1.0
|
C1B
|
C:HEC1486
|
3.0
|
31.3
|
1.0
|
CD2
|
C:HIS318
|
3.0
|
33.7
|
1.0
|
C4D
|
C:HEC1486
|
3.0
|
35.5
|
1.0
|
C1D
|
C:HEC1486
|
3.0
|
33.9
|
1.0
|
C4B
|
C:HEC1486
|
3.0
|
31.8
|
1.0
|
C4A
|
C:HEC1486
|
3.0
|
34.3
|
1.0
|
C1A
|
C:HEC1486
|
3.0
|
35.2
|
1.0
|
C4C
|
C:HEC1486
|
3.0
|
34.4
|
1.0
|
C1C
|
C:HEC1486
|
3.1
|
33.0
|
1.0
|
CD2
|
C:HIS275
|
3.1
|
32.3
|
1.0
|
CE1
|
C:HIS275
|
3.1
|
32.4
|
1.0
|
CHB
|
C:HEC1486
|
3.4
|
32.8
|
1.0
|
CHD
|
C:HEC1486
|
3.4
|
33.7
|
1.0
|
CHA
|
C:HEC1486
|
3.4
|
35.3
|
1.0
|
CHC
|
C:HEC1486
|
3.4
|
30.2
|
1.0
|
ND1
|
C:HIS318
|
4.0
|
35.7
|
1.0
|
CG
|
C:HIS318
|
4.1
|
35.3
|
1.0
|
ND1
|
C:HIS275
|
4.2
|
32.6
|
1.0
|
CG
|
C:HIS275
|
4.2
|
32.0
|
1.0
|
C2B
|
C:HEC1486
|
4.3
|
30.8
|
1.0
|
C3D
|
C:HEC1486
|
4.3
|
34.7
|
1.0
|
C2D
|
C:HEC1486
|
4.3
|
35.3
|
1.0
|
C3B
|
C:HEC1486
|
4.3
|
31.8
|
1.0
|
C2A
|
C:HEC1486
|
4.3
|
35.5
|
1.0
|
C3A
|
C:HEC1486
|
4.3
|
34.5
|
1.0
|
C3C
|
C:HEC1486
|
4.3
|
35.0
|
1.0
|
C2C
|
C:HEC1486
|
4.3
|
34.4
|
1.0
|
CBC
|
C:HEC1485
|
4.8
|
28.9
|
1.0
|
|
Reference:
V.A.Bamford,
H.C.Angove,
H.E.Seward,
A.J.Thomson,
J.A.Cole,
J.N.Butt,
A.M.Hemmings,
D.J.Richardson.
Structure and Spectroscopy of the Periplasmic Cytochrome C Nitrite Reductase From Escherichia Coli Biochemistry V. 41 2921 2002.
ISSN: ISSN 0006-2960
PubMed: 11863430
DOI: 10.1021/BI015765D
Page generated: Sat Aug 3 06:20:01 2024
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