Atomistry » Iron » PDB 1gem-1gwe » 1guq
Atomistry »
  Iron »
    PDB 1gem-1gwe »
      1guq »

Iron in PDB 1guq: Structure of Nucleotidyltransferase Complexed with Udp-Glucose

Enzymatic activity of Structure of Nucleotidyltransferase Complexed with Udp-Glucose

All present enzymatic activity of Structure of Nucleotidyltransferase Complexed with Udp-Glucose:
2.7.7.10;

Protein crystallography data

The structure of Structure of Nucleotidyltransferase Complexed with Udp-Glucose, PDB code: 1guq was solved by J.B.Thoden, I.Rayment, H.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.400, 57.500, 188.900, 90.00, 100.13, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1guq:

The structure of Structure of Nucleotidyltransferase Complexed with Udp-Glucose also contains other interesting chemical elements:

Potassium (K) 4 atoms
Zinc (Zn) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Nucleotidyltransferase Complexed with Udp-Glucose (pdb code 1guq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Nucleotidyltransferase Complexed with Udp-Glucose, PDB code: 1guq:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1guq

Go back to Iron Binding Sites List in 1guq
Iron binding site 1 out of 4 in the Structure of Nucleotidyltransferase Complexed with Udp-Glucose


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Nucleotidyltransferase Complexed with Udp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe351

b:16.6
occ:1.00
NE2 A:HIS298 1.9 15.3 1.0
OE2 A:GLU182 2.1 15.6 1.0
NE2 A:HIS296 2.1 9.1 1.0
ND1 A:HIS281 2.1 16.1 1.0
OE1 A:GLU182 2.3 18.5 1.0
CD A:GLU182 2.5 15.2 1.0
CE1 A:HIS298 2.9 15.2 1.0
CD2 A:HIS298 3.0 10.0 1.0
CD2 A:HIS296 3.0 11.2 1.0
CE1 A:HIS281 3.1 16.8 1.0
CE1 A:HIS296 3.1 16.8 1.0
CG A:HIS281 3.2 24.9 1.0
CB A:HIS281 3.5 17.0 1.0
CD1 A:LEU17 3.9 17.9 1.0
CG A:GLU182 4.0 15.1 1.0
ND1 A:HIS298 4.0 13.7 1.0
O A:HOH400 4.0 31.9 1.0
CG A:HIS298 4.1 8.2 1.0
CG A:HIS296 4.2 14.4 1.0
ND1 A:HIS296 4.2 15.3 1.0
NE2 A:HIS281 4.2 14.1 1.0
CD2 A:HIS281 4.3 17.2 1.0
O A:HOH356 4.9 13.4 1.0
CG A:LEU17 4.9 14.9 1.0
CB A:GLU182 4.9 16.4 1.0
CD2 A:LEU17 5.0 10.3 1.0

Iron binding site 2 out of 4 in 1guq

Go back to Iron Binding Sites List in 1guq
Iron binding site 2 out of 4 in the Structure of Nucleotidyltransferase Complexed with Udp-Glucose


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Nucleotidyltransferase Complexed with Udp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe351

b:17.4
occ:1.00
NE2 B:HIS298 2.0 11.2 1.0
ND1 B:HIS281 2.0 20.7 1.0
NE2 B:HIS296 2.1 12.8 1.0
OE2 B:GLU182 2.2 17.6 1.0
OE1 B:GLU182 2.2 22.1 1.0
CD B:GLU182 2.5 20.1 1.0
CE1 B:HIS298 3.0 8.7 1.0
CE1 B:HIS281 3.0 22.2 1.0
CD2 B:HIS298 3.1 10.7 1.0
CD2 B:HIS296 3.1 16.9 1.0
CG B:HIS281 3.1 27.6 1.0
CE1 B:HIS296 3.2 16.5 1.0
CB B:HIS281 3.5 17.0 1.0
CG B:GLU182 4.0 12.7 1.0
CD1 B:LEU17 4.1 15.4 1.0
ND1 B:HIS298 4.1 7.9 1.0
NE2 B:HIS281 4.2 23.6 1.0
O B:HOH534 4.2 25.1 1.0
CG B:HIS298 4.2 12.9 1.0
CD2 B:HIS281 4.2 13.6 1.0
CG B:HIS296 4.2 11.7 1.0
ND1 B:HIS296 4.3 11.1 1.0
O B:HOH527 4.6 31.3 1.0
O B:HOH407 4.8 16.9 1.0
CD2 B:LEU17 4.8 23.9 1.0
CB B:GLU182 4.9 12.9 1.0
CG B:LEU17 5.0 19.0 1.0

Iron binding site 3 out of 4 in 1guq

Go back to Iron Binding Sites List in 1guq
Iron binding site 3 out of 4 in the Structure of Nucleotidyltransferase Complexed with Udp-Glucose


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Nucleotidyltransferase Complexed with Udp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe351

b:19.1
occ:1.00
NE2 C:HIS296 2.0 16.6 1.0
OE2 C:GLU182 2.0 16.6 1.0
NE2 C:HIS298 2.1 13.8 1.0
ND1 C:HIS281 2.2 18.9 1.0
OE1 C:GLU182 2.5 18.2 1.0
CD C:GLU182 2.5 25.1 1.0
CE1 C:HIS296 2.9 15.5 1.0
CE1 C:HIS298 3.0 11.1 1.0
CD2 C:HIS296 3.1 15.2 1.0
CD2 C:HIS298 3.1 11.5 1.0
CE1 C:HIS281 3.1 19.3 1.0
CG C:HIS281 3.2 26.3 1.0
CB C:HIS281 3.5 19.3 1.0
CD1 C:LEU17 3.7 13.3 1.0
CG C:GLU182 4.0 15.9 1.0
ND1 C:HIS296 4.1 15.3 1.0
ND1 C:HIS298 4.1 14.7 1.0
CG C:HIS296 4.2 17.1 1.0
CG C:HIS298 4.2 9.9 1.0
NE2 C:HIS281 4.3 18.1 1.0
CD2 C:HIS281 4.3 23.9 1.0
O C:HOH887 4.3 22.2 1.0
CD2 C:LEU17 4.7 17.5 1.0
CG C:LEU17 4.7 29.2 1.0
CB C:GLU182 4.9 15.6 1.0

Iron binding site 4 out of 4 in 1guq

Go back to Iron Binding Sites List in 1guq
Iron binding site 4 out of 4 in the Structure of Nucleotidyltransferase Complexed with Udp-Glucose


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Nucleotidyltransferase Complexed with Udp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe351

b:18.8
occ:1.00
ND1 D:HIS281 1.9 17.8 1.0
NE2 D:HIS298 2.1 14.2 1.0
OE2 D:GLU182 2.1 23.5 1.0
NE2 D:HIS296 2.2 17.2 1.0
OE1 D:GLU182 2.4 25.8 1.0
CD D:GLU182 2.5 38.4 1.0
CE1 D:HIS281 2.9 17.8 1.0
CG D:HIS281 2.9 17.5 1.0
CD2 D:HIS298 3.1 22.7 1.0
CE1 D:HIS298 3.1 20.7 1.0
CE1 D:HIS296 3.2 14.6 1.0
CD2 D:HIS296 3.2 17.9 1.0
CB D:HIS281 3.3 21.6 1.0
CD1 D:LEU17 4.0 27.0 1.0
CG D:GLU182 4.0 20.9 1.0
NE2 D:HIS281 4.0 12.4 1.0
CD2 D:HIS281 4.1 14.6 1.0
O D:HOH915 4.1 23.6 1.0
CG D:HIS298 4.2 12.6 1.0
ND1 D:HIS298 4.2 21.1 1.0
CG D:HIS296 4.3 18.3 1.0
ND1 D:HIS296 4.3 16.8 1.0
O C:HOH762 4.8 16.5 1.0
CA D:HIS281 4.8 16.6 1.0
CB D:GLU182 4.9 22.7 1.0

Reference:

J.B.Thoden, F.J.Ruzicka, P.A.Frey, I.Rayment, H.M.Holden. Structural Analysis of the H166G Site-Directed Mutant of Galactose-1-Phosphate Uridylyltransferase Complexed with Either Udp-Glucose or Udp-Galactose: Detailed Description of the Nucleotide Sugar Binding Site. Biochemistry V. 36 1212 1997.
ISSN: ISSN 0006-2960
PubMed: 9063869
DOI: 10.1021/BI9626517
Page generated: Sun Dec 13 14:16:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy