Iron in PDB 1i4z: The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
Protein crystallography data
The structure of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin, PDB code: 1i4z
was solved by
C.S.Farmer,
D.M.Kurtz Jr.,
Z.-J.Liu,
B.C.Wang,
J.Rose,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
66.57 /
2.10
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.083,
129.991,
71.413,
90.00,
111.22,
90.00
|
|
R / Rfree (%)
|
24.8 /
31.1
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
(pdb code 1i4z). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin, PDB code: 1i4z:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 1 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:17.2
occ:1.00
|
FE1
|
A:FEO601
|
0.0
|
17.2
|
1.0
|
|
O
|
A:FEO601
|
1.9
|
17.4
|
1.0
|
|
NE2
|
A:HIS101
|
2.2
|
16.0
|
1.0
|
|
OD1
|
A:ASP106
|
2.2
|
4.8
|
1.0
|
|
NE2
|
A:HIS77
|
2.2
|
5.5
|
1.0
|
|
OE1
|
A:GLU58
|
2.3
|
11.0
|
1.0
|
|
NE2
|
A:HIS73
|
2.3
|
15.1
|
1.0
|
|
CD2
|
A:HIS101
|
3.1
|
16.4
|
1.0
|
|
CE1
|
A:HIS101
|
3.2
|
16.0
|
1.0
|
|
CE1
|
A:HIS77
|
3.2
|
4.8
|
1.0
|
|
CD2
|
A:HIS77
|
3.2
|
8.2
|
1.0
|
|
CG
|
A:ASP106
|
3.2
|
12.2
|
1.0
|
|
CD2
|
A:HIS73
|
3.2
|
15.2
|
1.0
|
|
CE1
|
A:HIS73
|
3.2
|
9.1
|
1.0
|
|
CD
|
A:GLU58
|
3.3
|
11.9
|
1.0
|
|
FE2
|
A:FEO601
|
3.3
|
19.0
|
1.0
|
|
OD2
|
A:ASP106
|
3.5
|
17.6
|
1.0
|
|
OE2
|
A:GLU58
|
3.6
|
14.6
|
1.0
|
|
CG
|
A:HIS101
|
4.2
|
16.2
|
1.0
|
|
ND1
|
A:HIS101
|
4.2
|
15.7
|
1.0
|
|
ND1
|
A:HIS77
|
4.3
|
6.6
|
1.0
|
|
ND1
|
A:HIS73
|
4.4
|
9.6
|
1.0
|
|
O
|
A:HOH625
|
4.4
|
19.7
|
1.0
|
|
CG
|
A:HIS77
|
4.4
|
4.8
|
1.0
|
|
CG
|
A:HIS73
|
4.4
|
12.8
|
1.0
|
|
CB
|
A:ASP106
|
4.6
|
13.3
|
1.0
|
|
CG
|
A:GLU58
|
4.6
|
10.7
|
1.0
|
|
CE1
|
A:PHE55
|
4.8
|
7.8
|
1.0
|
|
NE2
|
A:HIS54
|
4.8
|
11.7
|
1.0
|
|
CA
|
A:ASP106
|
4.9
|
13.7
|
1.0
|
|
CG2
|
A:ILE105
|
4.9
|
17.2
|
1.0
|
|
CD1
|
A:PHE55
|
5.0
|
8.9
|
1.0
|
|
CE2
|
A:TYR109
|
5.0
|
14.4
|
1.0
|
|
N
|
A:ASP106
|
5.0
|
15.3
|
1.0
|
|
Iron binding site 2 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 2 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:19.0
occ:1.00
|
FE2
|
A:FEO601
|
0.0
|
19.0
|
1.0
|
|
O
|
A:FEO601
|
1.7
|
17.4
|
1.0
|
|
NE2
|
A:HIS25
|
2.1
|
15.1
|
1.0
|
|
O
|
A:HOH625
|
2.1
|
19.7
|
1.0
|
|
NE2
|
A:HIS54
|
2.2
|
11.7
|
1.0
|
|
OD2
|
A:ASP106
|
2.4
|
17.6
|
1.0
|
|
OE2
|
A:GLU58
|
2.6
|
14.6
|
1.0
|
|
CD2
|
A:HIS25
|
2.9
|
16.0
|
1.0
|
|
CD2
|
A:HIS54
|
3.1
|
7.9
|
1.0
|
|
CE1
|
A:HIS25
|
3.1
|
16.9
|
1.0
|
|
CD
|
A:GLU58
|
3.2
|
11.9
|
1.0
|
|
CG
|
A:ASP106
|
3.3
|
12.2
|
1.0
|
|
FE1
|
A:FEO601
|
3.3
|
17.2
|
1.0
|
|
OE1
|
A:GLU58
|
3.3
|
11.0
|
1.0
|
|
CE1
|
A:HIS54
|
3.3
|
9.0
|
1.0
|
|
OD1
|
A:ASP106
|
3.5
|
4.8
|
1.0
|
|
CG
|
A:HIS25
|
4.1
|
13.8
|
1.0
|
|
ND1
|
A:HIS25
|
4.2
|
13.9
|
1.0
|
|
CG
|
A:HIS54
|
4.3
|
12.6
|
1.0
|
|
CD2
|
A:HIS101
|
4.3
|
16.4
|
1.0
|
|
ND1
|
A:HIS54
|
4.4
|
7.4
|
1.0
|
|
CG
|
A:GLU58
|
4.5
|
10.7
|
1.0
|
|
NE2
|
A:HIS101
|
4.5
|
16.0
|
1.0
|
|
OH
|
A:TYR98
|
4.6
|
20.9
|
1.0
|
|
OH
|
A:TYR109
|
4.6
|
19.3
|
1.0
|
|
CB
|
A:ASP106
|
4.6
|
13.3
|
1.0
|
|
NE2
|
A:HIS77
|
4.8
|
5.5
|
1.0
|
|
CE1
|
A:PHE55
|
4.9
|
7.8
|
1.0
|
|
CE1
|
A:TYR98
|
4.9
|
20.1
|
1.0
|
|
CG2
|
A:ILE21
|
5.0
|
11.7
|
1.0
|
|
Iron binding site 3 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 3 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:12.6
occ:1.00
|
FE1
|
B:FEO602
|
0.0
|
12.6
|
1.0
|
|
O
|
B:FEO602
|
1.9
|
9.1
|
1.0
|
|
OE1
|
B:GLU58
|
2.2
|
4.8
|
1.0
|
|
OD1
|
B:ASP106
|
2.2
|
11.6
|
1.0
|
|
NE2
|
B:HIS77
|
2.2
|
4.8
|
1.0
|
|
NE2
|
B:HIS101
|
2.3
|
5.7
|
1.0
|
|
NE2
|
B:HIS73
|
2.4
|
19.5
|
1.0
|
|
CD2
|
B:HIS101
|
3.0
|
5.8
|
1.0
|
|
CE1
|
B:HIS77
|
3.1
|
4.8
|
1.0
|
|
CD
|
B:GLU58
|
3.2
|
6.3
|
1.0
|
|
CG
|
B:ASP106
|
3.3
|
18.0
|
1.0
|
|
CD2
|
B:HIS77
|
3.3
|
4.8
|
1.0
|
|
FE2
|
B:FEO602
|
3.3
|
20.0
|
1.0
|
|
CD2
|
B:HIS73
|
3.3
|
20.4
|
1.0
|
|
CE1
|
B:HIS101
|
3.4
|
11.1
|
1.0
|
|
CE1
|
B:HIS73
|
3.5
|
20.6
|
1.0
|
|
OD2
|
B:ASP106
|
3.6
|
13.7
|
1.0
|
|
OE2
|
B:GLU58
|
3.7
|
14.4
|
1.0
|
|
CG
|
B:HIS101
|
4.2
|
10.0
|
1.0
|
|
ND1
|
B:HIS77
|
4.3
|
5.3
|
1.0
|
|
CE1
|
B:PHE55
|
4.3
|
4.8
|
1.0
|
|
ND1
|
B:HIS101
|
4.4
|
12.3
|
1.0
|
|
CG
|
B:HIS77
|
4.4
|
4.8
|
1.0
|
|
CG
|
B:GLU58
|
4.5
|
8.2
|
1.0
|
|
CD1
|
B:PHE55
|
4.5
|
4.8
|
1.0
|
|
CG
|
B:HIS73
|
4.5
|
21.8
|
1.0
|
|
ND1
|
B:HIS73
|
4.6
|
19.8
|
1.0
|
|
CB
|
B:ASP106
|
4.6
|
17.0
|
1.0
|
|
NE2
|
B:HIS54
|
4.8
|
9.6
|
1.0
|
|
CA
|
B:ASP106
|
4.9
|
16.4
|
1.0
|
|
CE2
|
B:TYR109
|
5.0
|
8.5
|
1.0
|
|
Iron binding site 4 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 4 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:20.0
occ:1.00
|
FE2
|
B:FEO602
|
0.0
|
20.0
|
1.0
|
|
O
|
B:FEO602
|
1.7
|
9.1
|
1.0
|
|
NE2
|
B:HIS54
|
2.2
|
9.6
|
1.0
|
|
NE2
|
B:HIS25
|
2.2
|
11.7
|
1.0
|
|
OD2
|
B:ASP106
|
2.4
|
13.7
|
1.0
|
|
OE2
|
B:GLU58
|
2.5
|
14.4
|
1.0
|
|
CD2
|
B:HIS25
|
3.1
|
9.2
|
1.0
|
|
CD2
|
B:HIS54
|
3.1
|
11.6
|
1.0
|
|
CE1
|
B:HIS54
|
3.2
|
12.1
|
1.0
|
|
CD
|
B:GLU58
|
3.2
|
6.3
|
1.0
|
|
CG
|
B:ASP106
|
3.2
|
18.0
|
1.0
|
|
CE1
|
B:HIS25
|
3.2
|
8.6
|
1.0
|
|
FE1
|
B:FEO602
|
3.3
|
12.6
|
1.0
|
|
OE1
|
B:GLU58
|
3.3
|
4.8
|
1.0
|
|
OD1
|
B:ASP106
|
3.3
|
11.6
|
1.0
|
|
CG
|
B:HIS25
|
4.2
|
14.3
|
1.0
|
|
ND1
|
B:HIS25
|
4.3
|
11.4
|
1.0
|
|
CG
|
B:HIS54
|
4.3
|
12.3
|
1.0
|
|
ND1
|
B:HIS54
|
4.3
|
7.8
|
1.0
|
|
OH
|
B:TYR98
|
4.4
|
8.8
|
1.0
|
|
CD2
|
B:HIS101
|
4.5
|
5.8
|
1.0
|
|
OH
|
B:TYR109
|
4.5
|
10.2
|
1.0
|
|
CB
|
B:ASP106
|
4.6
|
17.0
|
1.0
|
|
CG
|
B:GLU58
|
4.6
|
8.2
|
1.0
|
|
NE2
|
B:HIS101
|
4.7
|
5.7
|
1.0
|
|
CE1
|
B:TYR98
|
4.8
|
4.8
|
1.0
|
|
CE1
|
B:PHE55
|
4.8
|
4.8
|
1.0
|
|
NE2
|
B:HIS77
|
4.9
|
4.8
|
1.0
|
|
CB
|
B:GLU58
|
4.9
|
9.4
|
1.0
|
|
CG1
|
B:ILE102
|
5.0
|
9.1
|
1.0
|
|
CD1
|
B:PHE55
|
5.0
|
4.8
|
1.0
|
|
CZ
|
B:TYR98
|
5.0
|
4.8
|
1.0
|
|
Iron binding site 5 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 5 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe603
b:8.5
occ:1.00
|
FE1
|
C:FEO603
|
0.0
|
8.5
|
1.0
|
|
O
|
C:FEO603
|
1.8
|
18.7
|
1.0
|
|
NE2
|
C:HIS77
|
2.1
|
11.6
|
1.0
|
|
OE1
|
C:GLU58
|
2.2
|
4.8
|
1.0
|
|
NE2
|
C:HIS101
|
2.2
|
4.8
|
1.0
|
|
NE2
|
C:HIS73
|
2.3
|
5.7
|
1.0
|
|
OD1
|
C:ASP106
|
2.5
|
14.0
|
1.0
|
|
CD2
|
C:HIS77
|
3.0
|
8.3
|
1.0
|
|
CD2
|
C:HIS101
|
3.1
|
7.7
|
1.0
|
|
CE1
|
C:HIS77
|
3.1
|
4.8
|
1.0
|
|
CD2
|
C:HIS73
|
3.1
|
4.9
|
1.0
|
|
CD
|
C:GLU58
|
3.2
|
13.8
|
1.0
|
|
CE1
|
C:HIS101
|
3.3
|
7.2
|
1.0
|
|
CE1
|
C:HIS73
|
3.3
|
4.8
|
1.0
|
|
FE2
|
C:FEO603
|
3.3
|
21.0
|
1.0
|
|
CG
|
C:ASP106
|
3.4
|
14.3
|
1.0
|
|
OE2
|
C:GLU58
|
3.4
|
17.5
|
1.0
|
|
OD2
|
C:ASP106
|
3.7
|
15.6
|
1.0
|
|
ND1
|
C:HIS77
|
4.2
|
14.3
|
1.0
|
|
CG
|
C:HIS77
|
4.2
|
10.9
|
1.0
|
|
CG
|
C:HIS101
|
4.3
|
9.5
|
1.0
|
|
CG
|
C:HIS73
|
4.3
|
5.3
|
1.0
|
|
ND1
|
C:HIS101
|
4.3
|
10.0
|
1.0
|
|
ND1
|
C:HIS73
|
4.4
|
4.8
|
1.0
|
|
CE1
|
C:PHE55
|
4.5
|
8.8
|
1.0
|
|
CG
|
C:GLU58
|
4.5
|
12.9
|
1.0
|
|
NE2
|
C:HIS54
|
4.6
|
7.2
|
1.0
|
|
CD1
|
C:PHE55
|
4.6
|
10.2
|
1.0
|
|
CB
|
C:ASP106
|
4.7
|
9.2
|
1.0
|
|
CE2
|
C:TYR109
|
4.9
|
4.8
|
1.0
|
|
Iron binding site 6 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 6 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe603
b:21.0
occ:1.00
|
FE2
|
C:FEO603
|
0.0
|
21.0
|
1.0
|
|
O
|
C:FEO603
|
1.9
|
18.7
|
1.0
|
|
NE2
|
C:HIS54
|
2.3
|
7.2
|
1.0
|
|
NE2
|
C:HIS25
|
2.4
|
5.8
|
1.0
|
|
OD2
|
C:ASP106
|
2.5
|
15.6
|
1.0
|
|
OE2
|
C:GLU58
|
2.6
|
17.5
|
1.0
|
|
CD2
|
C:HIS54
|
3.1
|
7.7
|
1.0
|
|
CD2
|
C:HIS25
|
3.1
|
5.0
|
1.0
|
|
FE1
|
C:FEO603
|
3.3
|
8.5
|
1.0
|
|
CG
|
C:ASP106
|
3.4
|
14.3
|
1.0
|
|
CE1
|
C:HIS54
|
3.4
|
7.5
|
1.0
|
|
CE1
|
C:HIS25
|
3.5
|
8.9
|
1.0
|
|
CD
|
C:GLU58
|
3.5
|
13.8
|
1.0
|
|
OD1
|
C:ASP106
|
3.7
|
14.0
|
1.0
|
|
OE1
|
C:GLU58
|
3.7
|
4.8
|
1.0
|
|
CD2
|
C:HIS101
|
4.1
|
7.7
|
1.0
|
|
OH
|
C:TYR98
|
4.2
|
4.8
|
1.0
|
|
CG
|
C:HIS54
|
4.3
|
10.8
|
1.0
|
|
CG
|
C:HIS25
|
4.3
|
4.8
|
1.0
|
|
NE2
|
C:HIS101
|
4.4
|
4.8
|
1.0
|
|
ND1
|
C:HIS54
|
4.4
|
7.6
|
1.0
|
|
CE1
|
C:TYR98
|
4.4
|
6.2
|
1.0
|
|
ND1
|
C:HIS25
|
4.5
|
9.3
|
1.0
|
|
CE1
|
C:PHE55
|
4.6
|
8.8
|
1.0
|
|
OH
|
C:TYR109
|
4.6
|
5.7
|
1.0
|
|
CB
|
C:ASP106
|
4.6
|
9.2
|
1.0
|
|
NE2
|
C:HIS77
|
4.8
|
11.6
|
1.0
|
|
CZ
|
C:TYR98
|
4.8
|
4.8
|
1.0
|
|
CD1
|
C:PHE55
|
4.8
|
10.2
|
1.0
|
|
CG
|
C:GLU58
|
4.9
|
12.9
|
1.0
|
|
Iron binding site 7 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 7 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe604
b:8.8
occ:1.00
|
FE1
|
D:FEO604
|
0.0
|
8.8
|
1.0
|
|
O
|
D:FEO604
|
1.8
|
4.8
|
1.0
|
|
OE1
|
D:GLU58
|
2.3
|
4.8
|
1.0
|
|
NE2
|
D:HIS73
|
2.3
|
6.2
|
1.0
|
|
NE2
|
D:HIS77
|
2.3
|
10.2
|
1.0
|
|
NE2
|
D:HIS101
|
2.4
|
8.7
|
1.0
|
|
OD1
|
D:ASP106
|
2.4
|
4.9
|
1.0
|
|
CD
|
D:GLU58
|
3.1
|
7.8
|
1.0
|
|
CE1
|
D:HIS73
|
3.2
|
6.4
|
1.0
|
|
CD2
|
D:HIS77
|
3.2
|
10.2
|
1.0
|
|
CD2
|
D:HIS101
|
3.2
|
11.7
|
1.0
|
|
FE2
|
D:FEO604
|
3.3
|
16.4
|
1.0
|
|
CE1
|
D:HIS77
|
3.3
|
12.9
|
1.0
|
|
CD2
|
D:HIS73
|
3.3
|
4.8
|
1.0
|
|
OE2
|
D:GLU58
|
3.3
|
4.8
|
1.0
|
|
CE1
|
D:HIS101
|
3.5
|
12.8
|
1.0
|
|
CG
|
D:ASP106
|
3.5
|
4.8
|
1.0
|
|
OD2
|
D:ASP106
|
3.8
|
4.9
|
1.0
|
|
ND1
|
D:HIS73
|
4.3
|
7.2
|
1.0
|
|
CG
|
D:HIS77
|
4.4
|
9.1
|
1.0
|
|
ND1
|
D:HIS77
|
4.4
|
10.3
|
1.0
|
|
CG
|
D:HIS73
|
4.4
|
4.8
|
1.0
|
|
CG
|
D:HIS101
|
4.4
|
10.6
|
1.0
|
|
CE1
|
D:PHE55
|
4.5
|
4.8
|
1.0
|
|
CG
|
D:GLU58
|
4.5
|
6.5
|
1.0
|
|
ND1
|
D:HIS101
|
4.5
|
10.9
|
1.0
|
|
CD1
|
D:PHE55
|
4.5
|
8.1
|
1.0
|
|
CE2
|
D:TYR109
|
4.7
|
4.8
|
1.0
|
|
NE2
|
D:HIS54
|
4.8
|
21.1
|
1.0
|
|
CB
|
D:ASP106
|
4.8
|
8.0
|
1.0
|
|
CB
|
D:GLU58
|
4.9
|
4.8
|
1.0
|
|
Iron binding site 8 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 8 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe604
b:16.4
occ:1.00
|
FE2
|
D:FEO604
|
0.0
|
16.4
|
1.0
|
|
O
|
D:FEO604
|
1.9
|
4.8
|
1.0
|
|
NE2
|
D:HIS25
|
2.1
|
4.8
|
1.0
|
|
OE2
|
D:GLU58
|
2.3
|
4.8
|
1.0
|
|
NE2
|
D:HIS54
|
2.4
|
21.1
|
1.0
|
|
OD2
|
D:ASP106
|
2.4
|
4.9
|
1.0
|
|
CD2
|
D:HIS25
|
3.0
|
9.8
|
1.0
|
|
CG
|
D:ASP106
|
3.2
|
4.8
|
1.0
|
|
CE1
|
D:HIS25
|
3.2
|
7.8
|
1.0
|
|
OD1
|
D:ASP106
|
3.2
|
4.9
|
1.0
|
|
FE1
|
D:FEO604
|
3.3
|
8.8
|
1.0
|
|
CD
|
D:GLU58
|
3.3
|
7.8
|
1.0
|
|
CE1
|
D:HIS54
|
3.4
|
14.3
|
1.0
|
|
CD2
|
D:HIS54
|
3.4
|
18.3
|
1.0
|
|
OE1
|
D:GLU58
|
3.7
|
4.8
|
1.0
|
|
OH
|
D:TYR109
|
4.1
|
5.0
|
1.0
|
|
CG
|
D:HIS25
|
4.2
|
6.6
|
1.0
|
|
ND1
|
D:HIS25
|
4.2
|
4.8
|
1.0
|
|
CD2
|
D:HIS101
|
4.4
|
11.7
|
1.0
|
|
ND1
|
D:HIS54
|
4.5
|
19.7
|
1.0
|
|
CG
|
D:GLU58
|
4.5
|
6.5
|
1.0
|
|
CG
|
D:HIS54
|
4.5
|
17.2
|
1.0
|
|
CB
|
D:ASP106
|
4.6
|
8.0
|
1.0
|
|
OH
|
D:TYR98
|
4.6
|
23.3
|
1.0
|
|
NE2
|
D:HIS101
|
4.6
|
8.7
|
1.0
|
|
CG2
|
D:ILE21
|
4.6
|
9.8
|
1.0
|
|
CG1
|
D:ILE102
|
4.7
|
4.8
|
1.0
|
|
NE2
|
D:HIS77
|
5.0
|
10.2
|
1.0
|
|
CE1
|
D:TYR98
|
5.0
|
15.4
|
1.0
|
|
Iron binding site 9 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 9 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe605
b:18.8
occ:1.00
|
FE1
|
E:FEO605
|
0.0
|
18.8
|
1.0
|
|
O
|
E:FEO605
|
1.9
|
4.8
|
1.0
|
|
OD1
|
E:ASP106
|
2.3
|
8.2
|
1.0
|
|
NE2
|
E:HIS73
|
2.3
|
14.4
|
1.0
|
|
NE2
|
E:HIS101
|
2.3
|
12.4
|
1.0
|
|
OE1
|
E:GLU58
|
2.4
|
4.8
|
1.0
|
|
NE2
|
E:HIS77
|
2.4
|
9.2
|
1.0
|
|
CE1
|
E:HIS73
|
3.1
|
17.1
|
1.0
|
|
CD2
|
E:HIS101
|
3.1
|
13.4
|
1.0
|
|
FE2
|
E:FEO605
|
3.2
|
14.4
|
1.0
|
|
CG
|
E:ASP106
|
3.3
|
11.1
|
1.0
|
|
CE1
|
E:HIS101
|
3.3
|
14.6
|
1.0
|
|
CD
|
E:GLU58
|
3.3
|
7.0
|
1.0
|
|
CD2
|
E:HIS77
|
3.3
|
8.9
|
1.0
|
|
CD2
|
E:HIS73
|
3.4
|
16.0
|
1.0
|
|
CE1
|
E:HIS77
|
3.4
|
5.2
|
1.0
|
|
OE2
|
E:GLU58
|
3.5
|
4.8
|
1.0
|
|
OD2
|
E:ASP106
|
3.6
|
14.2
|
1.0
|
|
CG
|
E:HIS101
|
4.3
|
13.5
|
1.0
|
|
ND1
|
E:HIS73
|
4.3
|
17.4
|
1.0
|
|
ND1
|
E:HIS101
|
4.3
|
15.4
|
1.0
|
|
O
|
E:HOH621
|
4.4
|
22.6
|
1.0
|
|
CG
|
E:HIS73
|
4.4
|
15.4
|
1.0
|
|
CG
|
E:HIS77
|
4.5
|
10.2
|
1.0
|
|
ND1
|
E:HIS77
|
4.5
|
8.0
|
1.0
|
|
CB
|
E:ASP106
|
4.6
|
13.1
|
1.0
|
|
NE2
|
E:HIS54
|
4.7
|
11.2
|
1.0
|
|
CG
|
E:GLU58
|
4.7
|
8.0
|
1.0
|
|
CE1
|
E:PHE55
|
4.7
|
10.3
|
1.0
|
|
CE2
|
E:TYR109
|
4.8
|
8.2
|
1.0
|
|
CA
|
E:ASP106
|
4.8
|
13.5
|
1.0
|
|
N
|
E:ASP106
|
5.0
|
11.3
|
1.0
|
|
CD1
|
E:PHE55
|
5.0
|
6.8
|
1.0
|
|
CG2
|
E:ILE105
|
5.0
|
13.5
|
1.0
|
|
Iron binding site 10 out
of 16 in 1i4z
Go back to
Iron Binding Sites List in 1i4z
Iron binding site 10 out
of 16 in the The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The Crystal Structure of Phascolopsis Gouldii L98Y Methemerythrin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe605
b:14.4
occ:1.00
|
FE2
|
E:FEO605
|
0.0
|
14.4
|
1.0
|
|
O
|
E:FEO605
|
1.7
|
4.8
|
1.0
|
|
O
|
E:HOH621
|
2.1
|
22.6
|
1.0
|
|
NE2
|
E:HIS54
|
2.2
|
11.2
|
1.0
|
|
NE2
|
E:HIS25
|
2.4
|
4.8
|
1.0
|
|
OD2
|
E:ASP106
|
2.5
|
14.2
|
1.0
|
|
OE2
|
E:GLU58
|
2.7
|
4.8
|
1.0
|
|
CD2
|
E:HIS25
|
3.1
|
8.0
|
1.0
|
|
CD2
|
E:HIS54
|
3.1
|
11.9
|
1.0
|
|
CE1
|
E:HIS54
|
3.2
|
12.6
|
1.0
|
|
FE1
|
E:FEO605
|
3.2
|
18.8
|
1.0
|
|
CG
|
E:ASP106
|
3.3
|
11.1
|
1.0
|
|
OD1
|
E:ASP106
|
3.4
|
8.2
|
1.0
|
|
CD
|
E:GLU58
|
3.5
|
7.0
|
1.0
|
|
CE1
|
E:HIS25
|
3.5
|
4.8
|
1.0
|
|
OE1
|
E:GLU58
|
3.7
|
4.8
|
1.0
|
|
CG
|
E:HIS54
|
4.2
|
12.9
|
1.0
|
|
ND1
|
E:HIS54
|
4.3
|
13.1
|
1.0
|
|
CG
|
E:HIS25
|
4.3
|
6.5
|
1.0
|
|
CD2
|
E:HIS101
|
4.3
|
13.4
|
1.0
|
|
ND1
|
E:HIS25
|
4.4
|
8.0
|
1.0
|
|
NE2
|
E:HIS101
|
4.5
|
12.4
|
1.0
|
|
OH
|
E:TYR109
|
4.5
|
9.8
|
1.0
|
|
CE1
|
E:PHE55
|
4.7
|
10.3
|
1.0
|
|
OH
|
E:TYR98
|
4.7
|
14.5
|
1.0
|
|
CB
|
E:ASP106
|
4.7
|
13.1
|
1.0
|
|
CG
|
E:GLU58
|
4.7
|
8.0
|
1.0
|
|
NE2
|
E:HIS77
|
4.8
|
9.2
|
1.0
|
|
CE1
|
E:TYR98
|
4.9
|
14.2
|
1.0
|
|
CD1
|
E:PHE55
|
5.0
|
6.8
|
1.0
|
|
Reference:
C.S.Farmer,
D.M.Kurtz Jr.,
Z.J.Liu,
B.C.Wang,
J.Rose,
J.Ai,
J.Sanders-Loehr.
The Crystal Structures of Phascolopsis Gouldii Wild Type and L98Y Methemerythrins: Structural and Functional Alterations of the O2 Binding Pocket. J.Biol.Inorg.Chem. V. 6 418 2001.
ISSN: ISSN 0949-8257
PubMed: 11372200
DOI: 10.1007/S007750100218
Page generated: Sat Aug 3 07:59:21 2024
|
