Atomistry » Iron » PDB 1hzu-1ird » 1ids
Atomistry »
  Iron »
    PDB 1hzu-1ird »
      1ids »

Iron in PDB 1ids: X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions

Enzymatic activity of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions

All present enzymatic activity of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions:
1.15.1.1;

Protein crystallography data

The structure of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions, PDB code: 1ids was solved by J.B.Cooper, K.Mcintyre, S.P.Wood, Y.Zhang, D.Young, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.650, 85.400, 66.350, 90.00, 99.86, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions (pdb code 1ids). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions, PDB code: 1ids:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1ids

Go back to Iron Binding Sites List in 1ids
Iron binding site 1 out of 4 in the X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe208

b:0.1
occ:1.00
 OD2 A:ASP160 2.0 0.1 1.0
NE2 A:HIS76 2.2 0.0 1.0
NE2 A:HIS164 2.2 0.1 1.0
NE2 A:HIS28 2.2 0.1 1.0
O A:HOH1001 2.4 0.2 1.0
CG A:ASP160 3.0 0.1 1.0
CE1 A:HIS76 3.1 0.1 1.0
CE1 A:HIS164 3.1 0.1 1.0
CE1 A:HIS28 3.2 0.1 1.0
CD2 A:HIS28 3.3 0.1 1.0
CD2 A:HIS76 3.3 0.2 1.0
CD2 A:HIS164 3.3 0.2 1.0
OD1 A:ASP160 3.4 0.2 1.0
ND1 A:HIS76 4.3 0.2 1.0
CB A:ASP160 4.3 0.1 1.0
ND1 A:HIS164 4.3 0.1 1.0
CZ2 A:TRP125 4.4 0.1 1.0
ND1 A:HIS28 4.4 0.1 1.0
CG A:HIS76 4.4 0.1 1.0
CG A:HIS28 4.4 0.0 1.0
CG A:HIS164 4.4 0.1 1.0
CB A:TRP162 4.4 0.2 1.0
CH2 A:TRP125 4.6 0.0 1.0
CG A:TRP162 4.7 0.1 1.0
CB A:ALA165 4.9 0.1 1.0
CE1 A:HIS145 5.0 0.0 1.0

Iron binding site 2 out of 4 in 1ids

Go back to Iron Binding Sites List in 1ids
Iron binding site 2 out of 4 in the X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe208

b:0.1
occ:1.00
 OD2 B:ASP160 2.0 0.2 1.0
NE2 B:HIS76 2.1 0.1 1.0
NE2 B:HIS28 2.2 0.1 1.0
O B:HOH1002 2.3 0.1 1.0
NE2 B:HIS164 2.3 0.1 1.0
CE1 B:HIS76 3.1 0.2 1.0
CG B:ASP160 3.1 0.2 1.0
CD2 B:HIS76 3.2 0.0 1.0
CE1 B:HIS28 3.2 0.1 1.0
CE1 B:HIS164 3.3 0.0 1.0
CD2 B:HIS28 3.3 0.1 1.0
CD2 B:HIS164 3.4 0.3 1.0
OD1 B:ASP160 3.4 0.3 1.0
ND1 B:HIS76 4.2 0.1 1.0
CG B:HIS76 4.3 0.1 1.0
CB B:ASP160 4.4 0.1 1.0
ND1 B:HIS28 4.4 0.1 1.0
CZ2 B:TRP125 4.4 0.2 1.0
CG B:HIS28 4.4 0.0 1.0
CH2 B:TRP125 4.4 0.3 1.0
ND1 B:HIS164 4.5 0.1 1.0
CG B:HIS164 4.5 0.1 1.0
CB B:TRP162 4.7 0.1 1.0
CB B:ALA165 4.8 0.1 1.0
CG B:TRP162 4.9 0.1 1.0

Iron binding site 3 out of 4 in 1ids

Go back to Iron Binding Sites List in 1ids
Iron binding site 3 out of 4 in the X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe208

b:0.1
occ:1.00
 OD2 C:ASP160 2.0 0.2 1.0
NE2 C:HIS76 2.1 0.2 1.0
NE2 C:HIS28 2.2 0.2 1.0
NE2 C:HIS164 2.3 0.2 1.0
O C:HOH1003 2.3 0.2 1.0
CE1 C:HIS76 3.1 0.2 1.0
CG C:ASP160 3.1 0.1 1.0
CE1 C:HIS28 3.1 0.1 1.0
CD2 C:HIS76 3.2 0.2 1.0
CD2 C:HIS28 3.2 0.1 1.0
CD2 C:HIS164 3.3 0.2 1.0
CE1 C:HIS164 3.3 0.2 1.0
OD1 C:ASP160 3.6 0.2 1.0
ND1 C:HIS76 4.3 0.1 1.0
ND1 C:HIS28 4.3 0.2 1.0
CG C:HIS76 4.3 0.3 1.0
CB C:ASP160 4.3 0.1 1.0
CG C:HIS28 4.4 0.1 1.0
CG C:HIS164 4.5 0.2 1.0
ND1 C:HIS164 4.5 0.2 1.0
CB C:TRP162 4.5 0.0 1.0
CZ2 C:TRP125 4.6 0.1 1.0
CH2 C:TRP125 4.6 0.3 1.0
CG C:TRP162 4.7 0.3 1.0
CB C:ALA165 4.9 0.2 1.0

Iron binding site 4 out of 4 in 1ids

Go back to Iron Binding Sites List in 1ids
Iron binding site 4 out of 4 in the X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe208

b:0.1
occ:1.00
 OD2 D:ASP160 2.0 0.1 1.0
O D:HOH1004 2.2 0.2 1.0
NE2 D:HIS164 2.2 0.1 1.0
NE2 D:HIS28 2.3 0.2 1.0
NE2 D:HIS76 2.4 0.2 1.0
CG D:ASP160 3.1 0.0 1.0
CE1 D:HIS164 3.1 0.5 1.0
CD2 D:HIS76 3.2 0.1 1.0
CD2 D:HIS28 3.3 0.1 1.0
CD2 D:HIS164 3.3 0.1 1.0
CE1 D:HIS28 3.4 0.1 1.0
OD1 D:ASP160 3.4 0.2 1.0
CE1 D:HIS76 3.6 0.1 1.0
ND1 D:HIS164 4.3 0.3 1.0
CB D:ASP160 4.4 0.1 1.0
CG D:HIS164 4.4 0.1 1.0
CG D:HIS28 4.5 0.1 1.0
CH2 D:TRP125 4.5 0.0 1.0
CG D:HIS76 4.5 0.0 1.0
ND1 D:HIS28 4.5 0.1 1.0
CZ2 D:TRP125 4.5 0.0 1.0
CB D:TRP162 4.5 0.1 1.0
ND1 D:HIS76 4.6 0.2 1.0
CG D:TRP162 4.8 0.2 1.0
CB D:ALA165 4.9 0.1 1.0
CE1 D:HIS145 5.0 0.1 1.0

Reference:

J.B.Cooper, K.Mcintyre, M.O.Badasso, S.P.Wood, Y.Zhang, T.R.Garbe, D.Young. X-Ray Structure Analysis of the Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis at 2.0 Angstroms Resolution Reveals Novel Dimer-Dimer Interactions. J.Mol.Biol. V. 246 531 1995.
ISSN: ISSN 0022-2836
PubMed: 7877174
DOI: 10.1006/JMBI.1994.0105
Page generated: Sat Aug 3 08:04:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy