Iron in PDB 1ilx: Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Protein crystallography data
The structure of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure., PDB code: 1ilx
was solved by
S.Vasilev,
P.Orth,
A.Zouni,
T.G.Owens,
D.Bruce,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
3.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
130.010,
226.720,
308.290,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Other elements in 1ilx:
The structure of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
(pdb code 1ilx). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure., PDB code: 1ilx:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 1ilx
Go back to
Iron Binding Sites List in 1ilx
Iron binding site 1 out
of 6 in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. within 5.0Å range:
|
Iron binding site 2 out
of 6 in 1ilx
Go back to
Iron Binding Sites List in 1ilx
Iron binding site 2 out
of 6 in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. within 5.0Å range:
|
Iron binding site 3 out
of 6 in 1ilx
Go back to
Iron Binding Sites List in 1ilx
Iron binding site 3 out
of 6 in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe50
b:45.9
occ:1.00
|
FE
|
F:HEM50
|
0.0
|
45.9
|
1.0
|
ND
|
F:HEM50
|
2.0
|
45.1
|
1.0
|
NA
|
F:HEM50
|
2.1
|
44.6
|
1.0
|
NC
|
F:HEM50
|
2.1
|
43.8
|
1.0
|
NB
|
F:HEM50
|
2.1
|
46.8
|
1.0
|
C4A
|
F:HEM50
|
3.0
|
44.7
|
1.0
|
C4D
|
F:HEM50
|
3.0
|
45.2
|
1.0
|
C1D
|
F:HEM50
|
3.1
|
46.2
|
1.0
|
C1C
|
F:HEM50
|
3.1
|
42.9
|
1.0
|
C4C
|
F:HEM50
|
3.1
|
43.3
|
1.0
|
C1B
|
F:HEM50
|
3.1
|
45.2
|
1.0
|
C1A
|
F:HEM50
|
3.1
|
46.4
|
1.0
|
C4B
|
F:HEM50
|
3.1
|
45.0
|
1.0
|
CHC
|
F:HEM50
|
3.4
|
44.6
|
1.0
|
CHB
|
F:HEM50
|
3.4
|
44.7
|
1.0
|
CHD
|
F:HEM50
|
3.4
|
44.0
|
1.0
|
CHA
|
F:HEM50
|
3.4
|
45.6
|
1.0
|
C2D
|
F:HEM50
|
4.2
|
47.3
|
1.0
|
C3D
|
F:HEM50
|
4.3
|
45.8
|
1.0
|
C2B
|
F:HEM50
|
4.3
|
45.0
|
1.0
|
C3B
|
F:HEM50
|
4.3
|
45.6
|
1.0
|
C3A
|
F:HEM50
|
4.4
|
45.4
|
1.0
|
C2C
|
F:HEM50
|
4.4
|
40.4
|
1.0
|
C2A
|
F:HEM50
|
4.4
|
46.1
|
1.0
|
C3C
|
F:HEM50
|
4.4
|
40.1
|
1.0
|
|
Iron binding site 4 out
of 6 in 1ilx
Go back to
Iron Binding Sites List in 1ilx
Iron binding site 4 out
of 6 in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe88
b:45.9
occ:1.00
|
FE
|
I:HEM88
|
0.0
|
45.9
|
1.0
|
ND
|
I:HEM88
|
2.0
|
45.1
|
1.0
|
NA
|
I:HEM88
|
2.1
|
44.6
|
1.0
|
NC
|
I:HEM88
|
2.1
|
43.8
|
1.0
|
NB
|
I:HEM88
|
2.1
|
46.8
|
1.0
|
C4A
|
I:HEM88
|
3.0
|
44.7
|
1.0
|
C4D
|
I:HEM88
|
3.0
|
45.2
|
1.0
|
C1D
|
I:HEM88
|
3.1
|
46.2
|
1.0
|
C1C
|
I:HEM88
|
3.1
|
42.9
|
1.0
|
C4C
|
I:HEM88
|
3.1
|
43.3
|
1.0
|
C1B
|
I:HEM88
|
3.1
|
45.2
|
1.0
|
C1A
|
I:HEM88
|
3.1
|
46.4
|
1.0
|
C4B
|
I:HEM88
|
3.1
|
45.0
|
1.0
|
CHC
|
I:HEM88
|
3.4
|
44.6
|
1.0
|
CHB
|
I:HEM88
|
3.4
|
44.7
|
1.0
|
CHD
|
I:HEM88
|
3.4
|
44.0
|
1.0
|
CHA
|
I:HEM88
|
3.4
|
45.6
|
1.0
|
C2D
|
I:HEM88
|
4.2
|
47.3
|
1.0
|
C3D
|
I:HEM88
|
4.3
|
45.8
|
1.0
|
C2B
|
I:HEM88
|
4.3
|
45.0
|
1.0
|
C3B
|
I:HEM88
|
4.3
|
45.6
|
1.0
|
C3A
|
I:HEM88
|
4.4
|
45.4
|
1.0
|
C2C
|
I:HEM88
|
4.4
|
40.4
|
1.0
|
C2A
|
I:HEM88
|
4.4
|
46.1
|
1.0
|
C3C
|
I:HEM88
|
4.4
|
40.1
|
1.0
|
|
Iron binding site 5 out
of 6 in 1ilx
Go back to
Iron Binding Sites List in 1ilx
Iron binding site 5 out
of 6 in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe90
b:45.9
occ:1.00
|
FE
|
O:HEM90
|
0.0
|
45.9
|
1.0
|
ND
|
O:HEM90
|
2.0
|
45.1
|
1.0
|
NA
|
O:HEM90
|
2.1
|
44.6
|
1.0
|
NC
|
O:HEM90
|
2.1
|
43.8
|
1.0
|
NB
|
O:HEM90
|
2.1
|
46.8
|
1.0
|
C4A
|
O:HEM90
|
3.0
|
44.7
|
1.0
|
C4D
|
O:HEM90
|
3.0
|
45.2
|
1.0
|
C1D
|
O:HEM90
|
3.1
|
46.2
|
1.0
|
C1C
|
O:HEM90
|
3.1
|
42.9
|
1.0
|
C4C
|
O:HEM90
|
3.1
|
43.3
|
1.0
|
C1B
|
O:HEM90
|
3.1
|
45.2
|
1.0
|
C1A
|
O:HEM90
|
3.1
|
46.4
|
1.0
|
C4B
|
O:HEM90
|
3.1
|
45.0
|
1.0
|
CHC
|
O:HEM90
|
3.4
|
44.6
|
1.0
|
CHB
|
O:HEM90
|
3.4
|
44.7
|
1.0
|
CHD
|
O:HEM90
|
3.4
|
44.0
|
1.0
|
CHA
|
O:HEM90
|
3.4
|
45.6
|
1.0
|
C2D
|
O:HEM90
|
4.2
|
47.3
|
1.0
|
C3D
|
O:HEM90
|
4.3
|
45.8
|
1.0
|
C2B
|
O:HEM90
|
4.3
|
45.0
|
1.0
|
C3B
|
O:HEM90
|
4.3
|
45.6
|
1.0
|
C3A
|
O:HEM90
|
4.4
|
45.4
|
1.0
|
C2C
|
O:HEM90
|
4.4
|
40.4
|
1.0
|
C2A
|
O:HEM90
|
4.4
|
46.1
|
1.0
|
C3C
|
O:HEM90
|
4.4
|
40.1
|
1.0
|
|
Iron binding site 6 out
of 6 in 1ilx
Go back to
Iron Binding Sites List in 1ilx
Iron binding site 6 out
of 6 in the Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Excited State Dynamics in Photosystem II Revised. New Insights From the X-Ray Structure. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe91
b:45.9
occ:1.00
|
FE
|
R:HEM91
|
0.0
|
45.9
|
1.0
|
ND
|
R:HEM91
|
2.0
|
45.1
|
1.0
|
NA
|
R:HEM91
|
2.1
|
44.6
|
1.0
|
NC
|
R:HEM91
|
2.1
|
43.8
|
1.0
|
NB
|
R:HEM91
|
2.1
|
46.8
|
1.0
|
C4A
|
R:HEM91
|
3.0
|
44.7
|
1.0
|
C4D
|
R:HEM91
|
3.0
|
45.2
|
1.0
|
C1D
|
R:HEM91
|
3.1
|
46.2
|
1.0
|
C1C
|
R:HEM91
|
3.1
|
42.9
|
1.0
|
C4C
|
R:HEM91
|
3.1
|
43.3
|
1.0
|
C1B
|
R:HEM91
|
3.1
|
45.2
|
1.0
|
C1A
|
R:HEM91
|
3.1
|
46.4
|
1.0
|
C4B
|
R:HEM91
|
3.1
|
45.0
|
1.0
|
CHC
|
R:HEM91
|
3.4
|
44.6
|
1.0
|
CHB
|
R:HEM91
|
3.4
|
44.7
|
1.0
|
CHD
|
R:HEM91
|
3.4
|
44.0
|
1.0
|
CHA
|
R:HEM91
|
3.4
|
45.6
|
1.0
|
C2D
|
R:HEM91
|
4.2
|
47.3
|
1.0
|
C3D
|
R:HEM91
|
4.3
|
45.8
|
1.0
|
C2B
|
R:HEM91
|
4.3
|
45.0
|
1.0
|
C3B
|
R:HEM91
|
4.3
|
45.6
|
1.0
|
C3A
|
R:HEM91
|
4.4
|
45.4
|
1.0
|
C2C
|
R:HEM91
|
4.4
|
40.4
|
1.0
|
C2A
|
R:HEM91
|
4.4
|
46.1
|
1.0
|
C3C
|
R:HEM91
|
4.4
|
40.1
|
1.0
|
|
Reference:
S.Vasil'ev,
P.Orth,
A.Zouni,
T.G.Owens,
D.Bruce.
Excited-State Dynamics in Photosystem II: Insights From the X-Ray Crystal Structure. Proc.Natl.Acad.Sci.Usa V. 98 8602 2001.
ISSN: ISSN 0027-8424
PubMed: 11459991
DOI: 10.1073/PNAS.141239598
Page generated: Sat Aug 3 08:05:27 2024
|