Iron in PDB 1ird: Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution
Protein crystallography data
The structure of Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution, PDB code: 1ird
was solved by
S.-Y.Park,
J.R.H.Tame,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
1.25
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.270,
53.270,
190.780,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.3 /
21.4
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution
(pdb code 1ird). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution, PDB code: 1ird:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 1ird
Go back to
Iron Binding Sites List in 1ird
Iron binding site 1 out
of 2 in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:13.4
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
13.4
|
1.0
|
C
|
A:CMO143
|
1.7
|
14.1
|
1.0
|
NA
|
A:HEM142
|
2.0
|
12.9
|
1.0
|
NC
|
A:HEM142
|
2.0
|
13.5
|
1.0
|
NB
|
A:HEM142
|
2.0
|
13.4
|
1.0
|
ND
|
A:HEM142
|
2.1
|
13.3
|
1.0
|
NE2
|
A:HIS87
|
2.1
|
12.7
|
1.0
|
O
|
A:CMO143
|
2.9
|
14.8
|
1.0
|
C4B
|
A:HEM142
|
3.0
|
12.9
|
1.0
|
C4C
|
A:HEM142
|
3.0
|
13.6
|
1.0
|
C1D
|
A:HEM142
|
3.0
|
14.1
|
1.0
|
C1C
|
A:HEM142
|
3.0
|
12.7
|
1.0
|
CE1
|
A:HIS87
|
3.0
|
13.2
|
1.0
|
C4D
|
A:HEM142
|
3.1
|
14.1
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
13.2
|
1.0
|
C1A
|
A:HEM142
|
3.1
|
13.4
|
1.0
|
C4A
|
A:HEM142
|
3.1
|
12.8
|
1.0
|
CD2
|
A:HIS87
|
3.1
|
14.1
|
1.0
|
CHB
|
A:HEM142
|
3.3
|
13.8
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
13.1
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
13.5
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
14.2
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
13.5
|
1.0
|
C3C
|
A:HEM142
|
4.2
|
13.2
|
1.0
|
C2C
|
A:HEM142
|
4.2
|
13.3
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
13.0
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
14.1
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
15.2
|
1.0
|
CG
|
A:HIS87
|
4.3
|
13.9
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
12.8
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
15.2
|
1.0
|
C2A
|
A:HEM142
|
4.4
|
15.3
|
1.0
|
NE2
|
A:HIS58
|
4.4
|
17.7
|
1.0
|
CG2
|
A:VAL62
|
5.0
|
15.6
|
1.0
|
|
Iron binding site 2 out
of 2 in 1ird
Go back to
Iron Binding Sites List in 1ird
Iron binding site 2 out
of 2 in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe347
b:16.1
occ:1.00
|
FE
|
B:HEM347
|
0.0
|
16.1
|
1.0
|
C
|
B:CMO348
|
1.7
|
15.1
|
1.0
|
NA
|
B:HEM347
|
2.0
|
15.8
|
1.0
|
NC
|
B:HEM347
|
2.0
|
16.2
|
1.0
|
NB
|
B:HEM347
|
2.0
|
15.8
|
1.0
|
ND
|
B:HEM347
|
2.0
|
16.7
|
1.0
|
NE2
|
B:HIS292
|
2.1
|
16.5
|
1.0
|
O
|
B:CMO348
|
2.9
|
16.7
|
1.0
|
C1A
|
B:HEM347
|
3.0
|
16.6
|
1.0
|
C1D
|
B:HEM347
|
3.0
|
16.8
|
1.0
|
C4B
|
B:HEM347
|
3.0
|
16.5
|
1.0
|
C4C
|
B:HEM347
|
3.0
|
16.1
|
1.0
|
C1C
|
B:HEM347
|
3.1
|
16.3
|
1.0
|
C4A
|
B:HEM347
|
3.1
|
16.5
|
1.0
|
C1B
|
B:HEM347
|
3.1
|
16.3
|
1.0
|
CE1
|
B:HIS292
|
3.1
|
16.7
|
1.0
|
C4D
|
B:HEM347
|
3.1
|
17.9
|
1.0
|
CD2
|
B:HIS292
|
3.1
|
17.1
|
1.0
|
CHD
|
B:HEM347
|
3.4
|
16.6
|
1.0
|
CHC
|
B:HEM347
|
3.4
|
16.2
|
1.0
|
CHB
|
B:HEM347
|
3.5
|
16.3
|
1.0
|
CHA
|
B:HEM347
|
3.5
|
16.1
|
1.0
|
ND1
|
B:HIS292
|
4.2
|
15.9
|
1.0
|
C2C
|
B:HEM347
|
4.3
|
15.3
|
1.0
|
C3C
|
B:HEM347
|
4.3
|
16.1
|
1.0
|
C2D
|
B:HEM347
|
4.3
|
17.1
|
1.0
|
CG
|
B:HIS292
|
4.3
|
14.9
|
1.0
|
C3A
|
B:HEM347
|
4.3
|
16.8
|
1.0
|
C2A
|
B:HEM347
|
4.3
|
16.9
|
1.0
|
C3B
|
B:HEM347
|
4.3
|
16.4
|
1.0
|
C2B
|
B:HEM347
|
4.3
|
16.1
|
1.0
|
C3D
|
B:HEM347
|
4.3
|
16.7
|
1.0
|
NE2
|
B:HIS263
|
4.5
|
19.1
|
1.0
|
CG2
|
B:VAL267
|
4.7
|
18.0
|
1.0
|
|
Reference:
S.-Y.Park,
J.R.H.Tame.
Carbonmonoxy-Haemoglobin at 1.25 A Resolution To Be Published.
Page generated: Sat Aug 3 08:08:52 2024
|