Iron in PDB 1kyo: Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
Enzymatic activity of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
All present enzymatic activity of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C:
1.10.2.2;
Protein crystallography data
The structure of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C, PDB code: 1kyo
was solved by
C.Lange,
C.Hunte,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.64 /
2.97
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
147.224,
165.531,
195.889,
90.00,
104.19,
90.00
|
|
R / Rfree (%)
|
22.9 /
26.8
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Iron atom in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
(pdb code 1kyo). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the
Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C, PDB code: 1kyo:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 1 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:18.2
occ:1.00
|
FE
|
C:HEM501
|
0.0
|
18.2
|
1.0
|
|
ND
|
C:HEM501
|
2.0
|
13.7
|
1.0
|
|
NE2
|
C:HIS183
|
2.0
|
14.5
|
1.0
|
|
NE2
|
C:HIS82
|
2.0
|
16.9
|
1.0
|
|
NC
|
C:HEM501
|
2.0
|
15.1
|
1.0
|
|
NA
|
C:HEM501
|
2.0
|
13.3
|
1.0
|
|
NB
|
C:HEM501
|
2.0
|
12.6
|
1.0
|
|
CE1
|
C:HIS183
|
2.9
|
13.0
|
1.0
|
|
C4D
|
C:HEM501
|
3.0
|
14.7
|
1.0
|
|
CE1
|
C:HIS82
|
3.0
|
16.6
|
1.0
|
|
C1D
|
C:HEM501
|
3.0
|
15.2
|
1.0
|
|
C1A
|
C:HEM501
|
3.0
|
13.7
|
1.0
|
|
C1C
|
C:HEM501
|
3.0
|
16.3
|
1.0
|
|
C4C
|
C:HEM501
|
3.0
|
16.1
|
1.0
|
|
C4B
|
C:HEM501
|
3.0
|
14.2
|
1.0
|
|
CD2
|
C:HIS82
|
3.1
|
18.1
|
1.0
|
|
C4A
|
C:HEM501
|
3.1
|
13.8
|
1.0
|
|
CD2
|
C:HIS183
|
3.1
|
14.8
|
1.0
|
|
C1B
|
C:HEM501
|
3.1
|
11.3
|
1.0
|
|
CHA
|
C:HEM501
|
3.4
|
13.6
|
1.0
|
|
CHD
|
C:HEM501
|
3.4
|
16.1
|
1.0
|
|
CHC
|
C:HEM501
|
3.4
|
15.3
|
1.0
|
|
CHB
|
C:HEM501
|
3.5
|
13.3
|
1.0
|
|
ND1
|
C:HIS183
|
4.1
|
14.9
|
1.0
|
|
ND1
|
C:HIS82
|
4.1
|
19.8
|
1.0
|
|
CG
|
C:HIS183
|
4.2
|
15.6
|
1.0
|
|
C3D
|
C:HEM501
|
4.2
|
15.2
|
1.0
|
|
CG
|
C:HIS82
|
4.2
|
19.9
|
1.0
|
|
C2D
|
C:HEM501
|
4.2
|
14.4
|
1.0
|
|
C2A
|
C:HEM501
|
4.3
|
13.2
|
1.0
|
|
C3B
|
C:HEM501
|
4.3
|
15.0
|
1.0
|
|
C3C
|
C:HEM501
|
4.3
|
18.6
|
1.0
|
|
C2C
|
C:HEM501
|
4.3
|
18.3
|
1.0
|
|
C3A
|
C:HEM501
|
4.3
|
12.4
|
1.0
|
|
C2B
|
C:HEM501
|
4.3
|
13.1
|
1.0
|
|
CA
|
C:GLY131
|
4.6
|
22.9
|
1.0
|
|
Iron binding site 2 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 2 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:17.2
occ:1.00
|
FE
|
C:HEM502
|
0.0
|
17.2
|
1.0
|
|
NC
|
C:HEM502
|
2.0
|
12.8
|
1.0
|
|
NE2
|
C:HIS96
|
2.0
|
16.1
|
1.0
|
|
ND
|
C:HEM502
|
2.0
|
14.4
|
1.0
|
|
NA
|
C:HEM502
|
2.0
|
13.7
|
1.0
|
|
NB
|
C:HEM502
|
2.0
|
11.4
|
1.0
|
|
NE2
|
C:HIS197
|
2.0
|
17.9
|
1.0
|
|
CD2
|
C:HIS96
|
3.0
|
17.4
|
1.0
|
|
C4C
|
C:HEM502
|
3.0
|
14.5
|
1.0
|
|
C1C
|
C:HEM502
|
3.0
|
12.2
|
1.0
|
|
C1A
|
C:HEM502
|
3.0
|
14.3
|
1.0
|
|
C1D
|
C:HEM502
|
3.0
|
15.2
|
1.0
|
|
CE1
|
C:HIS96
|
3.0
|
18.7
|
1.0
|
|
C4D
|
C:HEM502
|
3.0
|
16.2
|
1.0
|
|
C4B
|
C:HEM502
|
3.0
|
9.9
|
1.0
|
|
CE1
|
C:HIS197
|
3.0
|
19.3
|
1.0
|
|
CD2
|
C:HIS197
|
3.0
|
19.4
|
1.0
|
|
C4A
|
C:HEM502
|
3.0
|
12.9
|
1.0
|
|
C1B
|
C:HEM502
|
3.1
|
10.3
|
1.0
|
|
CHC
|
C:HEM502
|
3.4
|
11.7
|
1.0
|
|
CHD
|
C:HEM502
|
3.4
|
15.5
|
1.0
|
|
CHA
|
C:HEM502
|
3.4
|
15.2
|
1.0
|
|
CHB
|
C:HEM502
|
3.5
|
10.0
|
1.0
|
|
CG
|
C:HIS96
|
4.2
|
18.9
|
1.0
|
|
ND1
|
C:HIS96
|
4.2
|
21.3
|
1.0
|
|
ND1
|
C:HIS197
|
4.2
|
20.5
|
1.0
|
|
CG
|
C:HIS197
|
4.2
|
20.5
|
1.0
|
|
C3C
|
C:HEM502
|
4.2
|
13.9
|
1.0
|
|
C2C
|
C:HEM502
|
4.2
|
13.1
|
1.0
|
|
C2A
|
C:HEM502
|
4.2
|
14.1
|
1.0
|
|
C2D
|
C:HEM502
|
4.2
|
15.7
|
1.0
|
|
C3D
|
C:HEM502
|
4.2
|
16.8
|
1.0
|
|
C3A
|
C:HEM502
|
4.3
|
12.8
|
1.0
|
|
C3B
|
C:HEM502
|
4.3
|
10.8
|
1.0
|
|
C2B
|
C:HEM502
|
4.3
|
10.4
|
1.0
|
|
Iron binding site 3 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 3 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe503
b:32.2
occ:1.00
|
FE
|
D:HEM503
|
0.0
|
32.2
|
1.0
|
|
NC
|
D:HEM503
|
1.9
|
35.6
|
1.0
|
|
NE2
|
D:HIS105
|
2.0
|
35.5
|
1.0
|
|
NB
|
D:HEM503
|
2.0
|
33.7
|
1.0
|
|
ND
|
D:HEM503
|
2.0
|
34.5
|
1.0
|
|
NA
|
D:HEM503
|
2.0
|
32.9
|
1.0
|
|
SD
|
D:MET225
|
2.1
|
39.2
|
1.0
|
|
CE1
|
D:HIS105
|
2.9
|
36.8
|
1.0
|
|
C4C
|
D:HEM503
|
3.0
|
36.5
|
1.0
|
|
C1C
|
D:HEM503
|
3.0
|
36.5
|
1.0
|
|
CD2
|
D:HIS105
|
3.0
|
36.9
|
1.0
|
|
C4B
|
D:HEM503
|
3.0
|
34.8
|
1.0
|
|
C1B
|
D:HEM503
|
3.0
|
33.2
|
1.0
|
|
C1D
|
D:HEM503
|
3.1
|
34.9
|
1.0
|
|
C4A
|
D:HEM503
|
3.1
|
32.0
|
1.0
|
|
C4D
|
D:HEM503
|
3.1
|
34.5
|
1.0
|
|
C1A
|
D:HEM503
|
3.1
|
30.9
|
1.0
|
|
CHD
|
D:HEM503
|
3.4
|
35.3
|
1.0
|
|
CHC
|
D:HEM503
|
3.4
|
35.9
|
1.0
|
|
CHB
|
D:HEM503
|
3.4
|
32.6
|
1.0
|
|
CHA
|
D:HEM503
|
3.5
|
32.1
|
1.0
|
|
CE
|
D:MET225
|
3.5
|
36.3
|
1.0
|
|
CG
|
D:MET225
|
3.6
|
41.2
|
1.0
|
|
ND1
|
D:HIS105
|
4.1
|
36.4
|
1.0
|
|
CG
|
D:HIS105
|
4.1
|
37.5
|
1.0
|
|
C3C
|
D:HEM503
|
4.2
|
37.1
|
1.0
|
|
C2C
|
D:HEM503
|
4.2
|
36.0
|
1.0
|
|
CB
|
D:MET225
|
4.2
|
45.4
|
1.0
|
|
C2B
|
D:HEM503
|
4.2
|
34.8
|
1.0
|
|
C3B
|
D:HEM503
|
4.3
|
35.3
|
1.0
|
|
C2D
|
D:HEM503
|
4.3
|
35.4
|
1.0
|
|
C3A
|
D:HEM503
|
4.3
|
30.5
|
1.0
|
|
C2A
|
D:HEM503
|
4.3
|
29.2
|
1.0
|
|
C3D
|
D:HEM503
|
4.3
|
36.1
|
1.0
|
|
Iron binding site 4 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 4 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe504
b:24.1
occ:1.00
|
FE1
|
E:FES504
|
0.0
|
24.1
|
1.0
|
|
S2
|
E:FES504
|
2.1
|
21.5
|
1.0
|
|
S1
|
E:FES504
|
2.2
|
23.0
|
1.0
|
|
SG
|
E:CYS178
|
2.2
|
32.1
|
1.0
|
|
SG
|
E:CYS159
|
2.2
|
25.6
|
1.0
|
|
CB
|
E:CYS178
|
2.9
|
30.3
|
1.0
|
|
FE2
|
E:FES504
|
3.0
|
22.4
|
1.0
|
|
CB
|
E:CYS159
|
3.0
|
23.8
|
1.0
|
|
CB
|
E:HIS161
|
4.0
|
25.2
|
1.0
|
|
CB
|
E:CYS180
|
4.3
|
27.8
|
1.0
|
|
CA
|
E:CYS178
|
4.3
|
31.0
|
1.0
|
|
CB
|
E:SER183
|
4.4
|
40.4
|
1.0
|
|
OG
|
E:SER183
|
4.5
|
42.5
|
1.0
|
|
N
|
E:HIS181
|
4.5
|
28.4
|
1.0
|
|
CA
|
E:CYS159
|
4.5
|
24.7
|
1.0
|
|
ND1
|
E:HIS161
|
4.5
|
21.1
|
1.0
|
|
CB
|
E:CYS164
|
4.6
|
28.4
|
1.0
|
|
C
|
E:CYS178
|
4.8
|
30.3
|
1.0
|
|
O
|
E:CYS178
|
4.8
|
30.9
|
1.0
|
|
CG
|
E:HIS161
|
4.8
|
23.6
|
1.0
|
|
N
|
E:CYS164
|
4.8
|
28.4
|
1.0
|
|
N
|
E:LEU162
|
4.9
|
26.5
|
1.0
|
|
ND1
|
E:HIS181
|
4.9
|
22.3
|
1.0
|
|
N
|
E:HIS161
|
4.9
|
26.1
|
1.0
|
|
Iron binding site 5 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 5 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe504
b:22.4
occ:1.00
|
FE2
|
E:FES504
|
0.0
|
22.4
|
1.0
|
|
ND1
|
E:HIS161
|
2.1
|
21.1
|
1.0
|
|
ND1
|
E:HIS181
|
2.1
|
22.3
|
1.0
|
|
S1
|
E:FES504
|
2.2
|
23.0
|
1.0
|
|
S2
|
E:FES504
|
2.2
|
21.5
|
1.0
|
|
FE1
|
E:FES504
|
3.0
|
24.1
|
1.0
|
|
CG
|
E:HIS181
|
3.0
|
22.2
|
1.0
|
|
CG
|
E:HIS161
|
3.0
|
23.6
|
1.0
|
|
CE1
|
E:HIS161
|
3.1
|
22.7
|
1.0
|
|
CB
|
E:HIS181
|
3.1
|
23.8
|
1.0
|
|
CE1
|
E:HIS181
|
3.2
|
21.7
|
1.0
|
|
CB
|
E:HIS161
|
3.3
|
25.2
|
1.0
|
|
N
|
E:HIS181
|
3.7
|
28.4
|
1.0
|
|
N
|
E:LEU162
|
3.9
|
26.5
|
1.0
|
|
CA
|
E:HIS181
|
4.0
|
27.0
|
1.0
|
|
CB
|
E:CYS180
|
4.1
|
27.8
|
1.0
|
|
CD2
|
E:HIS181
|
4.2
|
22.2
|
1.0
|
|
CD2
|
E:HIS161
|
4.2
|
23.5
|
1.0
|
|
NE2
|
E:HIS161
|
4.2
|
23.2
|
1.0
|
|
CB
|
E:LEU162
|
4.2
|
21.6
|
1.0
|
|
NE2
|
E:HIS181
|
4.3
|
21.6
|
1.0
|
|
SG
|
E:CYS159
|
4.3
|
25.6
|
1.0
|
|
C
|
E:CYS180
|
4.3
|
29.3
|
1.0
|
|
SG
|
E:CYS178
|
4.5
|
32.1
|
1.0
|
|
CA
|
E:HIS161
|
4.5
|
26.6
|
1.0
|
|
CG
|
E:LEU162
|
4.6
|
20.2
|
1.0
|
|
C
|
E:HIS161
|
4.6
|
27.7
|
1.0
|
|
CA
|
E:LEU162
|
4.6
|
24.9
|
1.0
|
|
CG
|
E:PRO195
|
4.6
|
29.9
|
1.0
|
|
CA
|
E:CYS180
|
4.8
|
29.4
|
1.0
|
|
CD1
|
E:LEU162
|
4.8
|
22.0
|
1.0
|
|
C
|
E:HIS181
|
4.9
|
28.7
|
1.0
|
|
Iron binding site 6 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 6 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe521
b:16.9
occ:1.00
|
FE
|
N:HEM521
|
0.0
|
16.9
|
1.0
|
|
ND
|
N:HEM521
|
2.0
|
12.7
|
1.0
|
|
NE2
|
N:HIS82
|
2.0
|
14.2
|
1.0
|
|
NE2
|
N:HIS183
|
2.0
|
15.3
|
1.0
|
|
NC
|
N:HEM521
|
2.0
|
12.8
|
1.0
|
|
NA
|
N:HEM521
|
2.0
|
10.9
|
1.0
|
|
NB
|
N:HEM521
|
2.1
|
13.2
|
1.0
|
|
CE1
|
N:HIS82
|
2.8
|
14.9
|
1.0
|
|
CE1
|
N:HIS183
|
2.9
|
16.0
|
1.0
|
|
C4D
|
N:HEM521
|
3.0
|
14.5
|
1.0
|
|
C1A
|
N:HEM521
|
3.0
|
12.6
|
1.0
|
|
C1D
|
N:HEM521
|
3.0
|
14.0
|
1.0
|
|
C4C
|
N:HEM521
|
3.0
|
15.5
|
1.0
|
|
C1C
|
N:HEM521
|
3.0
|
15.2
|
1.0
|
|
C4B
|
N:HEM521
|
3.1
|
15.6
|
1.0
|
|
C4A
|
N:HEM521
|
3.1
|
11.8
|
1.0
|
|
CD2
|
N:HIS183
|
3.1
|
15.9
|
1.0
|
|
C1B
|
N:HEM521
|
3.1
|
12.2
|
1.0
|
|
CD2
|
N:HIS82
|
3.1
|
13.9
|
1.0
|
|
CHA
|
N:HEM521
|
3.4
|
13.3
|
1.0
|
|
CHD
|
N:HEM521
|
3.4
|
14.7
|
1.0
|
|
CHC
|
N:HEM521
|
3.4
|
16.9
|
1.0
|
|
CHB
|
N:HEM521
|
3.5
|
12.3
|
1.0
|
|
ND1
|
N:HIS82
|
4.0
|
15.6
|
1.0
|
|
ND1
|
N:HIS183
|
4.1
|
15.1
|
1.0
|
|
CG
|
N:HIS183
|
4.2
|
16.7
|
1.0
|
|
CG
|
N:HIS82
|
4.2
|
15.2
|
1.0
|
|
C3D
|
N:HEM521
|
4.2
|
16.1
|
1.0
|
|
C2D
|
N:HEM521
|
4.2
|
16.0
|
1.0
|
|
C2A
|
N:HEM521
|
4.2
|
13.5
|
1.0
|
|
C3C
|
N:HEM521
|
4.3
|
17.2
|
1.0
|
|
C3A
|
N:HEM521
|
4.3
|
12.1
|
1.0
|
|
C2C
|
N:HEM521
|
4.3
|
17.0
|
1.0
|
|
C3B
|
N:HEM521
|
4.3
|
16.3
|
1.0
|
|
C2B
|
N:HEM521
|
4.3
|
13.9
|
1.0
|
|
CA
|
N:GLY131
|
4.6
|
25.2
|
1.0
|
|
Iron binding site 7 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 7 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe522
b:7.8
occ:1.00
|
FE
|
N:HEM522
|
0.0
|
7.8
|
1.0
|
|
ND
|
N:HEM522
|
2.0
|
11.8
|
1.0
|
|
NC
|
N:HEM522
|
2.0
|
10.9
|
1.0
|
|
NA
|
N:HEM522
|
2.0
|
12.1
|
1.0
|
|
NE2
|
N:HIS197
|
2.0
|
15.1
|
1.0
|
|
NB
|
N:HEM522
|
2.0
|
9.3
|
1.0
|
|
NE2
|
N:HIS96
|
2.0
|
16.5
|
1.0
|
|
CE1
|
N:HIS197
|
2.9
|
16.0
|
1.0
|
|
C1D
|
N:HEM522
|
3.0
|
13.9
|
1.0
|
|
C4C
|
N:HEM522
|
3.0
|
12.5
|
1.0
|
|
C4A
|
N:HEM522
|
3.0
|
12.8
|
1.0
|
|
CE1
|
N:HIS96
|
3.0
|
19.6
|
1.0
|
|
C1C
|
N:HEM522
|
3.0
|
11.0
|
1.0
|
|
C4D
|
N:HEM522
|
3.0
|
13.5
|
1.0
|
|
C1B
|
N:HEM522
|
3.0
|
9.1
|
1.0
|
|
C1A
|
N:HEM522
|
3.0
|
12.4
|
1.0
|
|
C4B
|
N:HEM522
|
3.1
|
9.8
|
1.0
|
|
CD2
|
N:HIS197
|
3.1
|
14.5
|
1.0
|
|
CD2
|
N:HIS96
|
3.1
|
16.7
|
1.0
|
|
CHD
|
N:HEM522
|
3.4
|
13.2
|
1.0
|
|
CHB
|
N:HEM522
|
3.4
|
11.5
|
1.0
|
|
CHC
|
N:HEM522
|
3.4
|
10.3
|
1.0
|
|
CHA
|
N:HEM522
|
3.4
|
11.0
|
1.0
|
|
ND1
|
N:HIS197
|
4.1
|
15.8
|
1.0
|
|
CG
|
N:HIS197
|
4.2
|
17.1
|
1.0
|
|
ND1
|
N:HIS96
|
4.2
|
19.2
|
1.0
|
|
C2D
|
N:HEM522
|
4.2
|
15.4
|
1.0
|
|
CG
|
N:HIS96
|
4.2
|
16.5
|
1.0
|
|
C3C
|
N:HEM522
|
4.2
|
11.3
|
1.0
|
|
C3A
|
N:HEM522
|
4.2
|
12.9
|
1.0
|
|
C2C
|
N:HEM522
|
4.2
|
11.7
|
1.0
|
|
C3D
|
N:HEM522
|
4.3
|
15.3
|
1.0
|
|
C2A
|
N:HEM522
|
4.3
|
14.1
|
1.0
|
|
C2B
|
N:HEM522
|
4.3
|
7.6
|
1.0
|
|
C3B
|
N:HEM522
|
4.3
|
8.3
|
1.0
|
|
Iron binding site 8 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 8 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe523
b:32.0
occ:1.00
|
FE
|
O:HEM523
|
0.0
|
32.0
|
1.0
|
|
NE2
|
O:HIS105
|
2.0
|
31.8
|
1.0
|
|
NB
|
O:HEM523
|
2.0
|
30.5
|
1.0
|
|
NC
|
O:HEM523
|
2.0
|
32.3
|
1.0
|
|
NA
|
O:HEM523
|
2.0
|
32.0
|
1.0
|
|
ND
|
O:HEM523
|
2.0
|
30.3
|
1.0
|
|
SD
|
O:MET225
|
2.1
|
36.3
|
1.0
|
|
CE1
|
O:HIS105
|
3.0
|
32.5
|
1.0
|
|
CD2
|
O:HIS105
|
3.0
|
32.2
|
1.0
|
|
C4B
|
O:HEM523
|
3.0
|
31.4
|
1.0
|
|
C1B
|
O:HEM523
|
3.0
|
30.2
|
1.0
|
|
C1C
|
O:HEM523
|
3.0
|
32.0
|
1.0
|
|
C4C
|
O:HEM523
|
3.0
|
31.9
|
1.0
|
|
C4A
|
O:HEM523
|
3.1
|
31.3
|
1.0
|
|
C1D
|
O:HEM523
|
3.1
|
30.6
|
1.0
|
|
C1A
|
O:HEM523
|
3.1
|
31.6
|
1.0
|
|
C4D
|
O:HEM523
|
3.1
|
29.6
|
1.0
|
|
CHC
|
O:HEM523
|
3.4
|
32.0
|
1.0
|
|
CHB
|
O:HEM523
|
3.4
|
29.8
|
1.0
|
|
CHD
|
O:HEM523
|
3.4
|
32.1
|
1.0
|
|
CHA
|
O:HEM523
|
3.4
|
31.0
|
1.0
|
|
CE
|
O:MET225
|
3.5
|
37.9
|
1.0
|
|
CG
|
O:MET225
|
3.5
|
35.8
|
1.0
|
|
ND1
|
O:HIS105
|
4.1
|
32.8
|
1.0
|
|
CG
|
O:HIS105
|
4.1
|
31.4
|
1.0
|
|
C2B
|
O:HEM523
|
4.2
|
31.4
|
1.0
|
|
C3B
|
O:HEM523
|
4.2
|
31.9
|
1.0
|
|
C2C
|
O:HEM523
|
4.3
|
32.0
|
1.0
|
|
C3C
|
O:HEM523
|
4.3
|
33.3
|
1.0
|
|
C3A
|
O:HEM523
|
4.3
|
31.5
|
1.0
|
|
C2A
|
O:HEM523
|
4.3
|
31.8
|
1.0
|
|
C2D
|
O:HEM523
|
4.3
|
29.6
|
1.0
|
|
CB
|
O:MET225
|
4.3
|
38.9
|
1.0
|
|
C3D
|
O:HEM523
|
4.3
|
29.0
|
1.0
|
|
Iron binding site 9 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 9 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe524
b:29.3
occ:1.00
|
FE1
|
P:FES524
|
0.0
|
29.3
|
1.0
|
|
S1
|
P:FES524
|
2.1
|
19.7
|
1.0
|
|
S2
|
P:FES524
|
2.1
|
22.8
|
1.0
|
|
SG
|
P:CYS159
|
2.2
|
23.9
|
1.0
|
|
SG
|
P:CYS178
|
2.2
|
31.6
|
1.0
|
|
FE2
|
P:FES524
|
2.9
|
23.1
|
1.0
|
|
CB
|
P:CYS178
|
3.0
|
32.2
|
1.0
|
|
CB
|
P:CYS159
|
3.1
|
20.4
|
1.0
|
|
CB
|
P:HIS161
|
4.0
|
27.3
|
1.0
|
|
OG
|
P:SER183
|
4.2
|
37.7
|
1.0
|
|
CB
|
P:CYS180
|
4.3
|
27.7
|
1.0
|
|
CB
|
P:SER183
|
4.4
|
35.9
|
1.0
|
|
CA
|
P:CYS178
|
4.4
|
32.8
|
1.0
|
|
CA
|
P:CYS159
|
4.5
|
22.6
|
1.0
|
|
ND1
|
P:HIS181
|
4.5
|
28.9
|
1.0
|
|
N
|
P:HIS181
|
4.5
|
30.6
|
1.0
|
|
CB
|
P:CYS164
|
4.6
|
26.4
|
1.0
|
|
ND1
|
P:HIS161
|
4.6
|
24.5
|
1.0
|
|
O
|
P:CYS178
|
4.7
|
33.4
|
1.0
|
|
N
|
P:LEU162
|
4.8
|
26.0
|
1.0
|
|
N
|
P:CYS164
|
4.8
|
27.9
|
1.0
|
|
C
|
P:CYS178
|
4.8
|
32.6
|
1.0
|
|
CG
|
P:HIS161
|
4.8
|
25.9
|
1.0
|
|
N
|
P:HIS161
|
4.9
|
27.1
|
1.0
|
|
N
|
P:SER183
|
5.0
|
33.6
|
1.0
|
|
Iron binding site 10 out
of 11 in 1kyo
Go back to
Iron Binding Sites List in 1kyo
Iron binding site 10 out
of 11 in the Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Yeast Cytochrome BC1 Complex with Bound Substrate Cytochrome C within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe524
b:23.1
occ:1.00
|
FE2
|
P:FES524
|
0.0
|
23.1
|
1.0
|
|
ND1
|
P:HIS181
|
2.1
|
28.9
|
1.0
|
|
S2
|
P:FES524
|
2.2
|
22.8
|
1.0
|
|
S1
|
P:FES524
|
2.2
|
19.7
|
1.0
|
|
ND1
|
P:HIS161
|
2.2
|
24.5
|
1.0
|
|
CG
|
P:HIS181
|
2.9
|
27.9
|
1.0
|
|
FE1
|
P:FES524
|
2.9
|
29.3
|
1.0
|
|
CG
|
P:HIS161
|
3.1
|
25.9
|
1.0
|
|
CE1
|
P:HIS181
|
3.1
|
28.8
|
1.0
|
|
CB
|
P:HIS181
|
3.1
|
28.8
|
1.0
|
|
CE1
|
P:HIS161
|
3.2
|
24.6
|
1.0
|
|
CB
|
P:HIS161
|
3.3
|
27.3
|
1.0
|
|
N
|
P:HIS181
|
3.7
|
30.6
|
1.0
|
|
CD2
|
P:HIS181
|
4.0
|
28.9
|
1.0
|
|
CA
|
P:HIS181
|
4.0
|
30.1
|
1.0
|
|
N
|
P:LEU162
|
4.1
|
26.0
|
1.0
|
|
CB
|
P:CYS180
|
4.1
|
27.7
|
1.0
|
|
NE2
|
P:HIS181
|
4.1
|
28.7
|
1.0
|
|
CD2
|
P:HIS161
|
4.3
|
25.6
|
1.0
|
|
CB
|
P:LEU162
|
4.3
|
25.2
|
1.0
|
|
NE2
|
P:HIS161
|
4.3
|
23.6
|
1.0
|
|
C
|
P:CYS180
|
4.4
|
30.5
|
1.0
|
|
CG
|
P:PRO195
|
4.5
|
37.1
|
1.0
|
|
CG
|
P:LEU162
|
4.5
|
25.6
|
1.0
|
|
SG
|
P:CYS159
|
4.5
|
23.9
|
1.0
|
|
CA
|
P:HIS161
|
4.6
|
27.9
|
1.0
|
|
CD1
|
P:LEU162
|
4.7
|
25.8
|
1.0
|
|
C
|
P:HIS161
|
4.7
|
27.9
|
1.0
|
|
SG
|
P:CYS178
|
4.7
|
31.6
|
1.0
|
|
CA
|
P:LEU162
|
4.8
|
24.7
|
1.0
|
|
CA
|
P:CYS180
|
4.8
|
29.5
|
1.0
|
|
C
|
P:HIS181
|
4.8
|
31.1
|
1.0
|
|
OG
|
P:SER183
|
5.0
|
37.7
|
1.0
|
|
Reference:
C.Lange,
C.Hunte.
Crystal Structure of the Yeast Cytochrome BC1 Complex with Its Bound Substrate Cytochrome C. Proc.Natl.Acad.Sci.Usa V. 99 2800 2002.
ISSN: ISSN 0027-8424
PubMed: 11880631
DOI: 10.1073/PNAS.052704699
Page generated: Sat Aug 3 09:31:50 2024
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