Iron in PDB 1l3o: Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures
Iron Binding Sites:
The binding sites of Iron atom in the Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures
(pdb code 1l3o). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures, PDB code: 1l3o:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 1l3o
Go back to
Iron Binding Sites List in 1l3o
Iron binding site 1 out
of 3 in the Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe130
b:10.0
occ:1.00
|
FE
|
A:HEC130
|
0.0
|
10.0
|
1.0
|
NA
|
A:HEC130
|
1.9
|
10.0
|
1.0
|
NB
|
A:HEC130
|
1.9
|
10.0
|
1.0
|
NC
|
A:HEC130
|
1.9
|
10.0
|
1.0
|
ND
|
A:HEC130
|
2.0
|
10.0
|
1.0
|
NE2
|
A:HIS17
|
2.0
|
10.0
|
1.0
|
NE2
|
A:HIS30
|
2.0
|
10.0
|
1.0
|
C4A
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C1B
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C4C
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C1A
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C1C
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C4B
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C1D
|
A:HEC130
|
2.9
|
10.0
|
1.0
|
C4D
|
A:HEC130
|
3.0
|
10.0
|
1.0
|
CE1
|
A:HIS30
|
3.0
|
10.0
|
1.0
|
CE1
|
A:HIS17
|
3.0
|
10.0
|
1.0
|
CD2
|
A:HIS17
|
3.0
|
10.0
|
1.0
|
CD2
|
A:HIS30
|
3.1
|
10.0
|
1.0
|
HE1
|
A:HIS30
|
3.2
|
10.0
|
1.0
|
CHB
|
A:HEC130
|
3.3
|
10.0
|
1.0
|
HD2
|
A:HIS17
|
3.3
|
10.0
|
1.0
|
HE1
|
A:HIS17
|
3.3
|
10.0
|
1.0
|
CHD
|
A:HEC130
|
3.3
|
10.0
|
1.0
|
CHC
|
A:HEC130
|
3.3
|
10.0
|
1.0
|
HD2
|
A:HIS30
|
3.3
|
10.0
|
1.0
|
CHA
|
A:HEC130
|
3.4
|
10.0
|
1.0
|
C3A
|
A:HEC130
|
4.1
|
10.0
|
1.0
|
C2A
|
A:HEC130
|
4.1
|
10.0
|
1.0
|
C2B
|
A:HEC130
|
4.1
|
10.0
|
1.0
|
C3C
|
A:HEC130
|
4.1
|
10.0
|
1.0
|
C2C
|
A:HEC130
|
4.2
|
10.0
|
1.0
|
ND1
|
A:HIS17
|
4.2
|
10.0
|
1.0
|
ND1
|
A:HIS30
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS17
|
4.2
|
10.0
|
1.0
|
C3B
|
A:HEC130
|
4.2
|
10.0
|
1.0
|
C2D
|
A:HEC130
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS30
|
4.2
|
10.0
|
1.0
|
C3D
|
A:HEC130
|
4.2
|
10.0
|
1.0
|
HHB
|
A:HEC130
|
4.3
|
10.0
|
1.0
|
HHD
|
A:HEC130
|
4.4
|
10.0
|
1.0
|
HHC
|
A:HEC130
|
4.4
|
10.0
|
1.0
|
HB2
|
A:PRO34
|
4.4
|
10.0
|
1.0
|
HHA
|
A:HEC130
|
4.4
|
10.0
|
1.0
|
HB2
|
A:CYS29
|
4.8
|
10.0
|
1.0
|
HB3
|
A:PRO34
|
4.9
|
10.0
|
1.0
|
|
Iron binding site 2 out
of 3 in 1l3o
Go back to
Iron Binding Sites List in 1l3o
Iron binding site 2 out
of 3 in the Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe153
b:10.0
occ:1.00
|
FE
|
A:HEC153
|
0.0
|
10.0
|
1.0
|
ND
|
A:HEC153
|
1.9
|
10.0
|
1.0
|
NB
|
A:HEC153
|
1.9
|
10.0
|
1.0
|
NA
|
A:HEC153
|
1.9
|
10.0
|
1.0
|
NC
|
A:HEC153
|
2.0
|
10.0
|
1.0
|
NE2
|
A:HIS20
|
2.0
|
10.0
|
1.0
|
NE2
|
A:HIS53
|
2.0
|
10.0
|
1.0
|
C4D
|
A:HEC153
|
2.9
|
10.0
|
1.0
|
C1D
|
A:HEC153
|
2.9
|
10.0
|
1.0
|
C1B
|
A:HEC153
|
2.9
|
10.0
|
1.0
|
C4B
|
A:HEC153
|
2.9
|
10.0
|
1.0
|
C4A
|
A:HEC153
|
2.9
|
10.0
|
1.0
|
C1A
|
A:HEC153
|
2.9
|
10.0
|
1.0
|
C1C
|
A:HEC153
|
3.0
|
10.0
|
1.0
|
C4C
|
A:HEC153
|
3.0
|
10.0
|
1.0
|
CE1
|
A:HIS53
|
3.0
|
10.0
|
1.0
|
CE1
|
A:HIS20
|
3.0
|
10.0
|
1.0
|
CD2
|
A:HIS20
|
3.1
|
10.0
|
1.0
|
CD2
|
A:HIS53
|
3.1
|
10.0
|
1.0
|
HE1
|
A:HIS53
|
3.2
|
10.0
|
1.0
|
HE1
|
A:HIS20
|
3.3
|
10.0
|
1.0
|
CHA
|
A:HEC153
|
3.3
|
10.0
|
1.0
|
CHC
|
A:HEC153
|
3.3
|
10.0
|
1.0
|
CHB
|
A:HEC153
|
3.3
|
10.0
|
1.0
|
CHD
|
A:HEC153
|
3.3
|
10.0
|
1.0
|
HD2
|
A:HIS20
|
3.4
|
10.0
|
1.0
|
HD2
|
A:HIS53
|
3.4
|
10.0
|
1.0
|
C3D
|
A:HEC153
|
4.1
|
10.0
|
1.0
|
C2D
|
A:HEC153
|
4.1
|
10.0
|
1.0
|
ND1
|
A:HIS53
|
4.2
|
10.0
|
1.0
|
ND1
|
A:HIS20
|
4.2
|
10.0
|
1.0
|
C2B
|
A:HEC153
|
4.2
|
10.0
|
1.0
|
C3A
|
A:HEC153
|
4.2
|
10.0
|
1.0
|
C2A
|
A:HEC153
|
4.2
|
10.0
|
1.0
|
C3B
|
A:HEC153
|
4.2
|
10.0
|
1.0
|
C2C
|
A:HEC153
|
4.2
|
10.0
|
1.0
|
C3C
|
A:HEC153
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS20
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS53
|
4.2
|
10.0
|
1.0
|
HHA
|
A:HEC153
|
4.4
|
10.0
|
1.0
|
HHC
|
A:HEC153
|
4.4
|
10.0
|
1.0
|
HHB
|
A:HEC153
|
4.4
|
10.0
|
1.0
|
HHD
|
A:HEC153
|
4.4
|
10.0
|
1.0
|
HB3
|
A:CYS49
|
4.8
|
10.0
|
1.0
|
HBC1
|
A:HEC166
|
4.9
|
10.0
|
1.0
|
|
Iron binding site 3 out
of 3 in 1l3o
Go back to
Iron Binding Sites List in 1l3o
Iron binding site 3 out
of 3 in the Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans, Ensemble of 35 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe166
b:10.0
occ:1.00
|
FE
|
A:HEC166
|
0.0
|
10.0
|
1.0
|
NA
|
A:HEC166
|
1.9
|
10.0
|
1.0
|
NB
|
A:HEC166
|
1.9
|
10.0
|
1.0
|
NC
|
A:HEC166
|
1.9
|
10.0
|
1.0
|
NE2
|
A:HIS45
|
2.0
|
10.0
|
1.0
|
ND
|
A:HEC166
|
2.0
|
10.0
|
1.0
|
NE2
|
A:HIS66
|
2.0
|
10.0
|
1.0
|
C4A
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
C1B
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
C1C
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
C1A
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
C4B
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
C4C
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
C1D
|
A:HEC166
|
2.9
|
10.0
|
1.0
|
CE1
|
A:HIS45
|
3.0
|
10.0
|
1.0
|
CE1
|
A:HIS66
|
3.0
|
10.0
|
1.0
|
C4D
|
A:HEC166
|
3.0
|
10.0
|
1.0
|
CD2
|
A:HIS45
|
3.1
|
10.0
|
1.0
|
CD2
|
A:HIS66
|
3.1
|
10.0
|
1.0
|
HE1
|
A:HIS66
|
3.2
|
10.0
|
1.0
|
HE1
|
A:HIS45
|
3.2
|
10.0
|
1.0
|
CHB
|
A:HEC166
|
3.3
|
10.0
|
1.0
|
CHC
|
A:HEC166
|
3.3
|
10.0
|
1.0
|
CHD
|
A:HEC166
|
3.3
|
10.0
|
1.0
|
CHA
|
A:HEC166
|
3.3
|
10.0
|
1.0
|
HD2
|
A:HIS45
|
3.3
|
10.0
|
1.0
|
HD2
|
A:HIS66
|
3.4
|
10.0
|
1.0
|
ND1
|
A:HIS45
|
4.1
|
10.0
|
1.0
|
ND1
|
A:HIS66
|
4.1
|
10.0
|
1.0
|
C3A
|
A:HEC166
|
4.1
|
10.0
|
1.0
|
C2A
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
C2B
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
C2C
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS45
|
4.2
|
10.0
|
1.0
|
C3B
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
C3C
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
C2D
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS66
|
4.2
|
10.0
|
1.0
|
C3D
|
A:HEC166
|
4.2
|
10.0
|
1.0
|
HHB
|
A:HEC166
|
4.4
|
10.0
|
1.0
|
HHC
|
A:HEC166
|
4.4
|
10.0
|
1.0
|
HHD
|
A:HEC166
|
4.4
|
10.0
|
1.0
|
HHA
|
A:HEC166
|
4.4
|
10.0
|
1.0
|
HB2
|
A:ALA44
|
4.9
|
10.0
|
1.0
|
HG22
|
A:VAL13
|
4.9
|
10.0
|
1.0
|
|
Reference:
M.Assfalg,
I.Bertini,
P.Turano,
M.Bruschi,
M.C.Durand,
M.T.Giudici-Orticoni,
A.Dolla.
A Quick Solution Structure Determination of the Fully Oxidized Double Mutant K9-10A Cytochrome C7 From Desulfuromonas Acetoxidans and Mechanistic Implications. J.Biomol.uc(Nmr) V. 22 107 2002.
ISSN: ISSN 0925-2738
PubMed: 11883773
DOI: 10.1023/A:1014202405862
Page generated: Sat Aug 3 09:34:13 2024
|