Atomistry » Iron » PDB 1kqj-1lfg » 1l5h
Atomistry »
  Iron »
    PDB 1kqj-1lfg »
      1l5h »

Iron in PDB 1l5h: Femo-Cofactor Deficient Nitrogenase Mofe Protein

Enzymatic activity of Femo-Cofactor Deficient Nitrogenase Mofe Protein

All present enzymatic activity of Femo-Cofactor Deficient Nitrogenase Mofe Protein:
1.18.6.1;

Protein crystallography data

The structure of Femo-Cofactor Deficient Nitrogenase Mofe Protein, PDB code: 1l5h was solved by B.Schmid, M.W.Ribbe, O.Einsle, M.Yoshida, L.M.Thomas, D.R.Dean, D.C.Rees, B.K.Burgess, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 150.452, 191.922, 102.339, 90.00, 90.00, 90.00
R / Rfree (%) 24.9 / 28.9

Other elements in 1l5h:

The structure of Femo-Cofactor Deficient Nitrogenase Mofe Protein also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Femo-Cofactor Deficient Nitrogenase Mofe Protein (pdb code 1l5h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Femo-Cofactor Deficient Nitrogenase Mofe Protein, PDB code: 1l5h:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 1 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:43.8
occ:1.00
 FE1 B:CLF602 0.0 43.8 1.0
S2A B:CLF602 2.1 71.4 1.0
S3A B:CLF602 2.2 53.4 1.0
S1 B:CLF602 2.3 47.4 1.0
SG B:CYS95 2.4 30.8 1.0
FE8 B:CLF602 2.5 39.9 1.0
FE4 B:CLF602 2.7 42.1 1.0
FE2 B:CLF602 2.7 45.7 1.0
N B:CYS95 3.1 36.6 1.0
FE3 B:CLF602 3.1 41.8 1.0
CA B:CYS95 3.3 34.9 1.0
CB B:CYS95 3.3 34.5 1.0
FE5 B:CLF602 3.5 46.2 1.0
S4B B:CLF602 3.6 47.4 1.0
C B:GLY94 3.9 37.4 1.0
S4A B:CLF602 4.1 47.1 1.0
FE6 B:CLF602 4.4 50.4 1.0
CA B:GLY94 4.5 38.4 1.0
SG A:CYS88 4.6 39.0 1.0
O B:GLY94 4.7 36.8 1.0
CB B:SER92 4.7 43.9 1.0
SG A:CYS154 4.7 41.8 1.0
S3B B:CLF602 4.8 47.3 1.0
C B:CYS95 4.8 34.1 1.0

Iron binding site 2 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 2 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:45.7
occ:1.00
 FE2 B:CLF602 0.0 45.7 1.0
S2A B:CLF602 2.2 71.4 1.0
S4A B:CLF602 2.3 47.1 1.0
SG A:CYS154 2.3 41.8 1.0
S1 B:CLF602 2.3 47.4 1.0
FE4 B:CLF602 2.6 42.1 1.0
FE1 B:CLF602 2.7 43.8 1.0
FE3 B:CLF602 2.9 41.8 1.0
CB A:CYS154 3.4 43.6 1.0
N A:CYS154 3.7 42.6 1.0
S3A B:CLF602 3.8 53.4 1.0
CA A:GLY185 4.0 46.4 1.0
CA A:CYS154 4.1 43.8 1.0
N A:GLY185 4.2 44.9 1.0
FE8 B:CLF602 4.3 39.9 1.0
OG B:SER92 4.3 47.7 1.0
FE5 B:CLF602 4.4 46.2 1.0
SG B:CYS95 4.4 30.8 1.0
SG A:CYS88 4.5 39.0 1.0
CB B:SER92 4.5 43.9 1.0
C A:GLY185 4.7 47.4 1.0
FE6 B:CLF602 4.9 50.4 1.0
SG B:CYS153 4.9 40.0 1.0
C A:GLU153 4.9 42.1 1.0

Iron binding site 3 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 3 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:41.8
occ:1.00
 FE3 B:CLF602 0.0 41.8 1.0
S4A B:CLF602 2.2 47.1 1.0
S3A B:CLF602 2.3 53.4 1.0
S2A B:CLF602 2.4 71.4 1.0
SG A:CYS62 2.4 41.6 1.0
FE4 B:CLF602 2.6 42.1 1.0
FE2 B:CLF602 2.9 45.7 1.0
FE1 B:CLF602 3.1 43.8 1.0
CB A:CYS62 3.5 42.7 1.0
CB A:TYR64 3.8 37.6 1.0
CA A:GLY185 3.8 46.4 1.0
S1 B:CLF602 4.1 47.4 1.0
CA B:GLY94 4.2 38.4 1.0
CD2 A:TYR64 4.4 37.0 1.0
CG A:TYR64 4.4 34.3 1.0
C B:GLY94 4.5 37.4 1.0
N A:GLY185 4.5 44.9 1.0
N B:CYS95 4.6 36.6 1.0
SG A:CYS154 4.7 41.8 1.0
O B:HOH638 4.8 44.6 1.0
SG A:CYS88 4.8 39.0 1.0
N A:TYR64 4.8 40.5 1.0
C A:GLY185 4.8 47.4 1.0
CE2 B:TYR98 4.9 39.0 1.0
CA A:TYR64 4.9 39.5 1.0
CA A:CYS62 4.9 42.9 1.0

Iron binding site 4 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 4 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:42.1
occ:1.00
 FE4 B:CLF602 0.0 42.1 1.0
S3A B:CLF602 2.3 53.4 1.0
S4A B:CLF602 2.3 47.1 1.0
S1 B:CLF602 2.3 47.4 1.0
SG A:CYS88 2.4 39.0 1.0
FE2 B:CLF602 2.6 45.7 1.0
FE3 B:CLF602 2.6 41.8 1.0
FE1 B:CLF602 2.7 43.8 1.0
FE5 B:CLF602 2.8 46.2 1.0
CB A:CYS88 3.3 38.8 1.0
S2A B:CLF602 3.4 71.4 1.0
FE8 B:CLF602 4.0 39.9 1.0
S4B B:CLF602 4.2 47.4 1.0
CA A:CYS88 4.3 37.7 1.0
CD2 A:TYR64 4.6 37.0 1.0
N A:CYS88 4.7 37.6 1.0
CB A:GLU153 4.8 43.2 1.0
CG A:TYR64 4.8 34.3 1.0
FE6 B:CLF602 4.8 50.4 1.0
SG A:CYS154 4.8 41.8 1.0
SG A:CYS62 4.8 41.6 1.0
CG A:GLU153 4.9 45.5 1.0
CB A:TYR64 4.9 37.6 1.0
N A:CYS154 4.9 42.6 1.0
SG B:CYS95 4.9 30.8 1.0
S2B B:CLF602 4.9 74.3 1.0

Iron binding site 5 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 5 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:46.2
occ:1.00
 FE5 B:CLF602 0.0 46.2 1.0
S4B B:CLF602 2.3 47.4 1.0
S2B B:CLF602 2.3 74.3 1.0
S1 B:CLF602 2.4 47.4 1.0
SG A:CYS88 2.4 39.0 1.0
FE8 B:CLF602 2.6 39.9 1.0
FE4 B:CLF602 2.8 42.1 1.0
FE7 B:CLF602 2.9 44.5 1.0
FE6 B:CLF602 2.9 50.4 1.0
N A:CYS88 3.2 37.6 1.0
FE1 B:CLF602 3.5 43.8 1.0
CB A:CYS88 3.6 38.8 1.0
CA A:CYS88 3.7 37.7 1.0
S3A B:CLF602 3.8 53.4 1.0
S3B B:CLF602 4.0 47.3 1.0
C A:GLY87 4.1 37.6 1.0
CA A:GLY87 4.4 37.2 1.0
FE2 B:CLF602 4.4 45.7 1.0
SG B:CYS95 4.7 30.8 1.0
OE1 A:GLU153 4.8 51.7 1.0
SG B:CYS153 4.8 40.0 1.0
SG B:CYS70 4.9 37.5 1.0
N A:GLY87 5.0 38.2 1.0
S4A B:CLF602 5.0 47.1 1.0

Iron binding site 6 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 6 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:50.4
occ:1.00
 FE6 B:CLF602 0.0 50.4 1.0
S3B B:CLF602 2.3 47.3 1.0
S2B B:CLF602 2.3 74.3 1.0
SG B:CYS153 2.5 40.0 1.0
FE8 B:CLF602 2.5 39.9 1.0
S1 B:CLF602 2.7 47.4 1.0
FE7 B:CLF602 2.8 44.5 1.0
FE5 B:CLF602 2.9 46.2 1.0
CB B:CYS153 3.2 44.5 1.0
OG B:SER188 3.5 47.3 1.0
N B:CYS153 3.6 44.0 1.0
CB B:SER188 3.8 44.8 1.0
S4B B:CLF602 3.9 47.4 1.0
CA B:CYS153 4.0 44.7 1.0
SG B:CYS95 4.4 30.8 1.0
FE1 B:CLF602 4.4 43.8 1.0
C B:THR152 4.7 44.1 1.0
SG A:CYS88 4.8 39.0 1.0
FE4 B:CLF602 4.8 42.1 1.0
O B:HOH730 4.8 51.6 1.0
FE2 B:CLF602 4.9 45.7 1.0
SG B:CYS70 4.9 37.5 1.0
CB B:THR152 4.9 40.2 1.0
CG A:PRO85 4.9 37.6 1.0
CB A:PRO85 4.9 37.6 1.0
CA B:THR152 5.0 43.4 1.0

Iron binding site 7 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 7 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:44.5
occ:1.00
 FE7 B:CLF602 0.0 44.5 1.0
SG B:CYS70 2.3 37.5 1.0
S4B B:CLF602 2.3 47.4 1.0
S3B B:CLF602 2.3 47.3 1.0
S2B B:CLF602 2.3 74.3 1.0
FE8 B:CLF602 2.7 39.9 1.0
FE6 B:CLF602 2.8 50.4 1.0
FE5 B:CLF602 2.9 46.2 1.0
CB B:CYS70 3.5 35.2 1.0
CB B:SER188 3.9 44.8 1.0
CG B:PRO72 4.1 35.0 1.0
CA A:GLY87 4.2 37.2 1.0
S1 B:CLF602 4.3 47.4 1.0
CE2 A:TYR91 4.4 38.9 1.0
CE1 B:PHE99 4.5 39.2 1.0
CZ B:PHE99 4.5 37.5 1.0
OG B:SER188 4.5 47.3 1.0
N A:CYS88 4.6 37.6 1.0
CD B:PRO72 4.7 34.6 1.0
C A:GLY87 4.8 37.6 1.0
N A:GLY87 4.8 38.2 1.0
SG B:CYS95 4.8 30.8 1.0
CA B:CYS70 4.9 37.1 1.0

Iron binding site 8 out of 8 in 1l5h

Go back to Iron Binding Sites List in 1l5h
Iron binding site 8 out of 8 in the Femo-Cofactor Deficient Nitrogenase Mofe Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Femo-Cofactor Deficient Nitrogenase Mofe Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe602

b:39.9
occ:1.00
 FE8 B:CLF602 0.0 39.9 1.0
SG B:CYS95 2.3 30.8 1.0
S4B B:CLF602 2.3 47.4 1.0
S3B B:CLF602 2.3 47.3 1.0
S1 B:CLF602 2.4 47.4 1.0
FE1 B:CLF602 2.5 43.8 1.0
FE6 B:CLF602 2.5 50.4 1.0
FE5 B:CLF602 2.6 46.2 1.0
FE7 B:CLF602 2.7 44.5 1.0
CB B:CYS95 3.1 34.5 1.0
S2B B:CLF602 3.6 74.3 1.0
CA B:CYS95 3.9 34.9 1.0
FE4 B:CLF602 4.0 42.1 1.0
S3A B:CLF602 4.2 53.4 1.0
FE2 B:CLF602 4.3 45.7 1.0
CB B:THR152 4.4 40.2 1.0
S2A B:CLF602 4.5 71.4 1.0
N B:CYS95 4.5 36.6 1.0
SG B:CYS153 4.5 40.0 1.0
CZ B:PHE99 4.6 37.5 1.0
N B:CYS153 4.8 44.0 1.0
CG2 B:THR152 4.8 37.6 1.0
SG B:CYS70 4.8 37.5 1.0
SG A:CYS88 4.8 39.0 1.0
CA B:THR152 5.0 43.4 1.0

Reference:

B.Schmid, M.W.Ribbe, O.Einsle, M.Yoshida, L.M.Thomas, D.R.Dean, D.C.Rees, B.K.Burgess. Structure of A Cofactor-Deficient Nitrogenase Mofe Protein. Science V. 296 352 2002.
ISSN: ISSN 0036-8075
PubMed: 11951047
DOI: 10.1126/SCIENCE.1070010
Page generated: Sat Aug 3 09:34:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy