Iron in PDB 1l6m: Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition

The structure of Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition, PDB code: 1l6m was solved by D.H.Goetz, N.Borregaard, M.E.Bluhm, K.N.Raymond, R.K.Strong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.76 / 2.40
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	115.078, 115.078, 115.221, 90.00, 90.00, 90.00
R / Rfree (%)	23.2 / 25.8

The binding sites of Iron atom in the Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition (pdb code 1l6m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition, PDB code: 1l6m:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe200 b:53.1 occ:1.00 O3 A:DBH201 1.8 76.3 1.0 O3 A:DBH202 1.9 84.6 1.0 O6 A:DBH202 2.0 85.7 1.0 O1 A:DBS203 2.2 63.6 1.0 O4 A:DBS203 2.3 62.1 1.0 O6 A:DBH201 2.3 75.3 1.0 C3 A:DBH202 2.7 85.6 1.0 C6 A:DBH202 2.8 85.3 1.0 C3 A:DBH201 2.8 75.6 1.0 C6 A:DBH201 3.0 74.9 1.0 C1 A:DBS203 3.1 63.4 1.0 C4 A:DBS203 3.2 62.4 1.0 NZ A:LYS134 3.8 40.5 1.0 C18 A:DBH202 4.1 86.2 1.0 C18 A:DBH201 4.2 75.0 1.0 C9 A:DBH202 4.2 85.3 1.0 NZ A:LYS125 4.2 40.6 1.0 OH A:TYR106 4.2 33.8 1.0 O17 A:DBH202 4.3 89.0 1.0 O17 A:DBH201 4.4 74.1 1.0 C9 A:DBH201 4.4 74.6 1.0 C16 A:DBS203 4.5 64.3 1.0 CZ2 A:TRP79 4.5 60.0 1.0 C7 A:DBS203 4.6 61.8 1.0 CE2 A:TYR106 4.7 33.2 1.0 NE1 A:TRP79 4.7 57.0 1.0 C21 A:DBH202 4.8 87.3 1.0 C21 A:DBH201 4.9 74.7 1.0 CE2 A:TRP79 4.9 57.8 1.0 N1 A:DBS203 4.9 70.7 1.0 CZ A:TYR106 4.9 31.4 1.0

Iron binding site 2 out of 3 in the Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe300 b:0.9 occ:1.00 O3 B:DBH301 1.9 91.4 1.0 O4 B:DBS303 2.0 70.6 1.0 O1 B:DBS303 2.0 73.1 1.0 O6 B:DBH302 2.0 94.1 1.0 O6 B:DBH301 2.0 92.1 1.0 O3 B:DBH302 2.3 95.8 1.0 C3 B:DBH301 2.7 91.8 1.0 C6 B:DBH301 2.8 91.9 1.0 C1 B:DBS303 2.8 71.8 1.0 C4 B:DBS303 2.8 70.7 1.0 C6 B:DBH302 2.9 94.6 1.0 C3 B:DBH302 3.1 95.2 1.0 C18 B:DBH301 4.1 91.4 1.0 OH B:TYR106 4.1 37.7 1.0 C9 B:DBH301 4.2 92.1 1.0 C7 B:DBS303 4.2 69.0 1.0 C16 B:DBS303 4.2 72.1 1.0 C9 B:DBH302 4.3 94.3 1.0 NZ B:LYS125 4.3 41.9 1.0 C18 B:DBH302 4.4 95.1 1.0 O17 B:DBH301 4.5 91.0 1.0 CE2 B:TYR106 4.5 31.9 1.0 N1 B:DBS303 4.6 76.3 1.0 NZ B:LYS134 4.7 42.3 1.0 CE B:LYS125 4.8 38.6 1.0 O15 B:DBS303 4.8 79.5 1.0 O17 B:DBH302 4.8 94.7 1.0 CZ B:TYR106 4.8 32.9 1.0 C21 B:DBH301 4.8 91.1 1.0 CZ B:ARG81 4.9 63.7 0.5 NH2 B:ARG81 4.9 64.7 0.5 CD B:LYS125 5.0 36.5 1.0 NH1 B:ARG81 5.0 64.2 0.5 C19 B:DBS303 5.0 73.8 1.0

Iron binding site 3 out of 3 in the Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Neutrophil Gelatinase-Associated Lipocalin Is A Novel Bacteriostatic Agent That Interferes with Siderophore- Mediated Iron Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe400 b:55.7 occ:1.00 O6 C:DBH401 2.1 81.9 1.0 O4 C:DBS403 2.1 56.4 1.0 O3 C:DBH401 2.3 82.1 1.0 O1 C:DBS403 2.3 58.9 1.0 C6 C:DBH401 2.9 82.1 1.0 C3 C:DBH401 3.0 82.2 1.0 C4 C:DBS403 3.0 56.3 1.0 C1 C:DBS403 3.1 58.1 1.0 NZ C:LYS125 3.9 42.6 1.0 OH C:TYR106 4.0 34.8 1.0 CZ2 C:TRP79 4.2 61.4 1.0 C9 C:DBH401 4.3 82.3 1.0 NZ C:LYS134 4.3 37.0 1.0 C18 C:DBH401 4.4 81.8 1.0 C7 C:DBS403 4.4 55.6 1.0 CE2 C:TYR106 4.4 29.6 1.0 C16 C:DBS403 4.5 58.9 1.0 CD C:LYS125 4.6 34.3 1.0 CZ C:TYR106 4.7 31.5 1.0 CE C:LYS125 4.8 39.9 1.0 N1 C:DBS403 4.9 65.9 1.0 CE2 C:TRP79 4.9 59.6 1.0 NE1 C:TRP79 4.9 59.1 1.0 O17 C:DBH401 5.0 81.3 1.0

D.H.Goetz, N.Borregaard, M.E.Bluhm, K.N.Raymond, R.K.Strong. The Neutrophil Lipocalin Ngal Is A Bacteriostatic Agent That Interferes with Siderophore-Mediated Iron Acquisition Mol.Cell V. 10 1033 2002.
ISSN: ISSN 1097-2765
PubMed: 12453412
DOI: 10.1016/S1097-2765(02)00708-6