Iron in PDB 1qdb: Cytochrome C Nitrite Reductase
Protein crystallography data
The structure of Cytochrome C Nitrite Reductase, PDB code: 1qdb
was solved by
O.Einsle,
A.Messerschmidt,
P.Stach,
R.Huber,
P.M.H.Kroneck,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
1.90
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
107.484,
185.344,
92.192,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.4 /
22
|
Other elements in 1qdb:
The structure of Cytochrome C Nitrite Reductase also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Iron atom in the Cytochrome C Nitrite Reductase
(pdb code 1qdb). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 15 binding sites of Iron where determined in the
Cytochrome C Nitrite Reductase, PDB code: 1qdb:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 1 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe515
b:26.5
occ:1.00
|
FE
|
A:HEM515
|
0.0
|
26.5
|
1.0
|
NZ
|
A:LYS133
|
1.9
|
25.4
|
1.0
|
NA
|
A:HEM515
|
1.9
|
23.1
|
1.0
|
ND
|
A:HEM515
|
1.9
|
22.2
|
1.0
|
NC
|
A:HEM515
|
2.0
|
22.6
|
1.0
|
NB
|
A:HEM515
|
2.0
|
26.2
|
1.0
|
O1
|
A:SO41501
|
2.1
|
46.6
|
1.0
|
C1D
|
A:HEM515
|
3.0
|
21.0
|
1.0
|
C4C
|
A:HEM515
|
3.0
|
23.9
|
1.0
|
C4A
|
A:HEM515
|
3.0
|
24.5
|
1.0
|
C1B
|
A:HEM515
|
3.0
|
25.7
|
1.0
|
C1A
|
A:HEM515
|
3.0
|
24.5
|
1.0
|
C4D
|
A:HEM515
|
3.0
|
23.6
|
1.0
|
C1C
|
A:HEM515
|
3.0
|
23.9
|
1.0
|
CE
|
A:LYS133
|
3.1
|
28.3
|
1.0
|
C4B
|
A:HEM515
|
3.1
|
24.7
|
1.0
|
CHD
|
A:HEM515
|
3.3
|
21.5
|
1.0
|
S
|
A:SO41501
|
3.3
|
53.9
|
1.0
|
CHB
|
A:HEM515
|
3.3
|
24.7
|
1.0
|
CHA
|
A:HEM515
|
3.4
|
21.9
|
1.0
|
CHC
|
A:HEM515
|
3.5
|
25.9
|
1.0
|
O2
|
A:SO41501
|
3.7
|
54.1
|
1.0
|
O3
|
A:SO41501
|
3.9
|
54.3
|
1.0
|
C2D
|
A:HEM515
|
4.2
|
22.2
|
1.0
|
C3A
|
A:HEM515
|
4.2
|
21.8
|
1.0
|
C3D
|
A:HEM515
|
4.2
|
20.4
|
1.0
|
C2A
|
A:HEM515
|
4.3
|
22.2
|
1.0
|
O
|
A:HOH1553
|
4.3
|
24.5
|
1.0
|
C3C
|
A:HEM515
|
4.3
|
22.0
|
1.0
|
C2C
|
A:HEM515
|
4.3
|
22.6
|
1.0
|
C2B
|
A:HEM515
|
4.3
|
25.8
|
1.0
|
C3B
|
A:HEM515
|
4.3
|
25.0
|
1.0
|
NE2
|
A:HIS282
|
4.3
|
23.4
|
1.0
|
O4
|
A:SO41501
|
4.4
|
50.6
|
1.0
|
CD
|
A:LYS133
|
4.4
|
28.0
|
1.0
|
O
|
A:HOH1607
|
4.7
|
29.0
|
1.0
|
CMD
|
A:HEM517
|
4.9
|
20.1
|
1.0
|
CD2
|
A:HIS282
|
4.9
|
23.1
|
1.0
|
|
Iron binding site 2 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 2 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe516
b:28.4
occ:1.00
|
FE
|
A:HEM516
|
0.0
|
28.4
|
1.0
|
NE2
|
A:HIS171
|
1.9
|
25.4
|
1.0
|
NA
|
A:HEM516
|
2.0
|
30.0
|
1.0
|
NE2
|
A:HIS318
|
2.0
|
22.9
|
1.0
|
ND
|
A:HEM516
|
2.0
|
27.8
|
1.0
|
NC
|
A:HEM516
|
2.0
|
28.3
|
1.0
|
NB
|
A:HEM516
|
2.0
|
29.5
|
1.0
|
CE1
|
A:HIS171
|
2.8
|
27.6
|
1.0
|
CD2
|
A:HIS318
|
2.9
|
24.0
|
1.0
|
C4A
|
A:HEM516
|
3.0
|
32.5
|
1.0
|
C1D
|
A:HEM516
|
3.0
|
27.3
|
1.0
|
C1A
|
A:HEM516
|
3.0
|
30.9
|
1.0
|
C4D
|
A:HEM516
|
3.0
|
26.4
|
1.0
|
C4C
|
A:HEM516
|
3.0
|
27.7
|
1.0
|
C1B
|
A:HEM516
|
3.0
|
31.1
|
1.0
|
CE1
|
A:HIS318
|
3.0
|
24.8
|
1.0
|
CD2
|
A:HIS171
|
3.0
|
26.2
|
1.0
|
C1C
|
A:HEM516
|
3.0
|
28.6
|
1.0
|
C4B
|
A:HEM516
|
3.1
|
29.9
|
1.0
|
CHB
|
A:HEM516
|
3.3
|
32.2
|
1.0
|
CHD
|
A:HEM516
|
3.4
|
26.7
|
1.0
|
CHA
|
A:HEM516
|
3.4
|
29.6
|
1.0
|
CHC
|
A:HEM516
|
3.4
|
30.2
|
1.0
|
ND1
|
A:HIS171
|
4.0
|
25.8
|
1.0
|
CG
|
A:HIS171
|
4.1
|
25.4
|
1.0
|
CG
|
A:HIS318
|
4.1
|
23.1
|
1.0
|
ND1
|
A:HIS318
|
4.1
|
22.6
|
1.0
|
C3A
|
A:HEM516
|
4.2
|
33.8
|
1.0
|
C2A
|
A:HEM516
|
4.2
|
32.4
|
1.0
|
C2C
|
A:HEM516
|
4.3
|
28.4
|
1.0
|
C3C
|
A:HEM516
|
4.3
|
26.7
|
1.0
|
C3D
|
A:HEM516
|
4.3
|
26.4
|
1.0
|
C2D
|
A:HEM516
|
4.3
|
27.0
|
1.0
|
C2B
|
A:HEM516
|
4.3
|
31.1
|
1.0
|
C3B
|
A:HEM516
|
4.3
|
29.3
|
1.0
|
CE
|
A:MET305
|
4.7
|
23.5
|
1.0
|
CG
|
A:GLN59
|
5.0
|
33.0
|
1.0
|
|
Iron binding site 3 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 3 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe517
b:20.7
occ:1.00
|
FE
|
A:HEM517
|
0.0
|
20.7
|
1.0
|
NA
|
A:HEM517
|
1.9
|
21.6
|
1.0
|
NC
|
A:HEM517
|
1.9
|
25.6
|
1.0
|
NE2
|
A:HIS214
|
2.0
|
23.7
|
1.0
|
NE2
|
A:HIS101
|
2.0
|
25.5
|
1.0
|
NB
|
A:HEM517
|
2.0
|
23.8
|
1.0
|
ND
|
A:HEM517
|
2.0
|
22.4
|
1.0
|
CE1
|
A:HIS214
|
2.9
|
23.1
|
1.0
|
C1C
|
A:HEM517
|
3.0
|
23.7
|
1.0
|
CE1
|
A:HIS101
|
3.0
|
26.5
|
1.0
|
C1A
|
A:HEM517
|
3.0
|
22.0
|
1.0
|
C4A
|
A:HEM517
|
3.0
|
21.8
|
1.0
|
C4D
|
A:HEM517
|
3.0
|
20.8
|
1.0
|
C4B
|
A:HEM517
|
3.0
|
23.8
|
1.0
|
C4C
|
A:HEM517
|
3.0
|
23.2
|
1.0
|
C1B
|
A:HEM517
|
3.0
|
22.1
|
1.0
|
C1D
|
A:HEM517
|
3.1
|
22.1
|
1.0
|
CD2
|
A:HIS101
|
3.1
|
25.0
|
1.0
|
CD2
|
A:HIS214
|
3.1
|
21.6
|
1.0
|
CHC
|
A:HEM517
|
3.3
|
22.8
|
1.0
|
CHA
|
A:HEM517
|
3.3
|
21.4
|
1.0
|
CHB
|
A:HEM517
|
3.4
|
23.4
|
1.0
|
CHD
|
A:HEM517
|
3.5
|
21.6
|
1.0
|
ND1
|
A:HIS214
|
4.1
|
20.8
|
1.0
|
ND1
|
A:HIS101
|
4.1
|
26.6
|
1.0
|
C2C
|
A:HEM517
|
4.2
|
25.0
|
1.0
|
C2A
|
A:HEM517
|
4.2
|
21.4
|
1.0
|
C3A
|
A:HEM517
|
4.2
|
20.9
|
1.0
|
CG
|
A:HIS214
|
4.2
|
22.0
|
1.0
|
CG
|
A:HIS101
|
4.2
|
25.1
|
1.0
|
C3C
|
A:HEM517
|
4.2
|
24.3
|
1.0
|
C2B
|
A:HEM517
|
4.3
|
23.8
|
1.0
|
C3D
|
A:HEM517
|
4.3
|
21.5
|
1.0
|
C3B
|
A:HEM517
|
4.3
|
20.8
|
1.0
|
C2D
|
A:HEM517
|
4.3
|
21.7
|
1.0
|
|
Iron binding site 4 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 4 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe518
b:20.6
occ:1.00
|
FE
|
A:HEM518
|
0.0
|
20.6
|
1.0
|
NB
|
A:HEM518
|
1.9
|
16.9
|
1.0
|
ND
|
A:HEM518
|
1.9
|
15.8
|
1.0
|
NC
|
A:HEM518
|
2.0
|
16.2
|
1.0
|
NA
|
A:HEM518
|
2.0
|
19.4
|
1.0
|
NE2
|
A:HIS411
|
2.0
|
17.3
|
1.0
|
NE2
|
A:HIS304
|
2.0
|
20.5
|
1.0
|
CE1
|
A:HIS411
|
2.8
|
15.2
|
1.0
|
C1C
|
A:HEM518
|
3.0
|
15.9
|
1.0
|
C4B
|
A:HEM518
|
3.0
|
16.3
|
1.0
|
C4D
|
A:HEM518
|
3.0
|
20.6
|
1.0
|
C1B
|
A:HEM518
|
3.0
|
16.3
|
1.0
|
CE1
|
A:HIS304
|
3.0
|
22.6
|
1.0
|
C1A
|
A:HEM518
|
3.0
|
18.4
|
1.0
|
C4A
|
A:HEM518
|
3.0
|
18.4
|
1.0
|
C1D
|
A:HEM518
|
3.0
|
16.6
|
1.0
|
C4C
|
A:HEM518
|
3.0
|
14.3
|
1.0
|
CD2
|
A:HIS304
|
3.1
|
23.2
|
1.0
|
CD2
|
A:HIS411
|
3.2
|
17.1
|
1.0
|
CHC
|
A:HEM518
|
3.3
|
16.1
|
1.0
|
CHA
|
A:HEM518
|
3.3
|
19.6
|
1.0
|
CHB
|
A:HEM518
|
3.4
|
17.6
|
1.0
|
CHD
|
A:HEM518
|
3.5
|
15.8
|
1.0
|
ND1
|
A:HIS411
|
4.0
|
17.1
|
1.0
|
ND1
|
A:HIS304
|
4.2
|
20.9
|
1.0
|
C2B
|
A:HEM518
|
4.2
|
15.1
|
1.0
|
C3B
|
A:HEM518
|
4.2
|
17.9
|
1.0
|
C2C
|
A:HEM518
|
4.2
|
13.7
|
1.0
|
CG
|
A:HIS411
|
4.2
|
17.2
|
1.0
|
C3D
|
A:HEM518
|
4.2
|
19.6
|
1.0
|
C2D
|
A:HEM518
|
4.2
|
18.8
|
1.0
|
CG
|
A:HIS304
|
4.2
|
23.0
|
1.0
|
C3C
|
A:HEM518
|
4.3
|
14.0
|
1.0
|
C3A
|
A:HEM518
|
4.3
|
20.6
|
1.0
|
C2A
|
A:HEM518
|
4.3
|
21.2
|
1.0
|
|
Iron binding site 5 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 5 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe519
b:17.8
occ:1.00
|
FE
|
A:HEM519
|
0.0
|
17.8
|
1.0
|
NE2
|
A:HIS336
|
2.0
|
21.8
|
1.0
|
NE2
|
A:HIS293
|
2.0
|
16.5
|
1.0
|
NB
|
A:HEM519
|
2.0
|
19.5
|
1.0
|
NA
|
A:HEM519
|
2.0
|
17.3
|
1.0
|
ND
|
A:HEM519
|
2.0
|
20.3
|
1.0
|
NC
|
A:HEM519
|
2.0
|
19.3
|
1.0
|
CE1
|
A:HIS336
|
2.9
|
24.0
|
1.0
|
CE1
|
A:HIS293
|
2.9
|
15.2
|
1.0
|
C1A
|
A:HEM519
|
3.0
|
16.7
|
1.0
|
C4C
|
A:HEM519
|
3.0
|
20.7
|
1.0
|
C1C
|
A:HEM519
|
3.0
|
21.0
|
1.0
|
C1D
|
A:HEM519
|
3.0
|
20.4
|
1.0
|
C4A
|
A:HEM519
|
3.0
|
16.5
|
1.0
|
C4D
|
A:HEM519
|
3.0
|
20.3
|
1.0
|
C1B
|
A:HEM519
|
3.0
|
22.4
|
1.0
|
C4B
|
A:HEM519
|
3.0
|
20.7
|
1.0
|
CD2
|
A:HIS293
|
3.1
|
16.7
|
1.0
|
CD2
|
A:HIS336
|
3.1
|
23.4
|
1.0
|
CHA
|
A:HEM519
|
3.4
|
18.6
|
1.0
|
CHD
|
A:HEM519
|
3.4
|
19.4
|
1.0
|
CHC
|
A:HEM519
|
3.4
|
20.8
|
1.0
|
CHB
|
A:HEM519
|
3.4
|
19.2
|
1.0
|
ND1
|
A:HIS336
|
4.1
|
24.7
|
1.0
|
ND1
|
A:HIS293
|
4.1
|
15.3
|
1.0
|
CG
|
A:HIS293
|
4.2
|
16.9
|
1.0
|
CG
|
A:HIS336
|
4.2
|
24.7
|
1.0
|
C2A
|
A:HEM519
|
4.2
|
15.9
|
1.0
|
C3A
|
A:HEM519
|
4.3
|
15.0
|
1.0
|
C2D
|
A:HEM519
|
4.3
|
21.5
|
1.0
|
C2C
|
A:HEM519
|
4.3
|
21.2
|
1.0
|
C3D
|
A:HEM519
|
4.3
|
21.2
|
1.0
|
C3C
|
A:HEM519
|
4.3
|
21.4
|
1.0
|
C2B
|
A:HEM519
|
4.3
|
20.7
|
1.0
|
C3B
|
A:HEM519
|
4.3
|
21.2
|
1.0
|
CBC
|
A:HEM518
|
4.9
|
14.7
|
1.0
|
|
Iron binding site 6 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 6 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe515
b:20.5
occ:1.00
|
FE
|
B:HEM515
|
0.0
|
20.5
|
1.0
|
NC
|
B:HEM515
|
1.9
|
15.6
|
1.0
|
NZ
|
B:LYS133
|
1.9
|
17.9
|
1.0
|
NA
|
B:HEM515
|
2.0
|
14.0
|
1.0
|
ND
|
B:HEM515
|
2.0
|
15.6
|
1.0
|
NB
|
B:HEM515
|
2.0
|
18.4
|
1.0
|
O1
|
B:SO41502
|
2.0
|
36.5
|
1.0
|
C1D
|
B:HEM515
|
3.0
|
15.7
|
1.0
|
C4C
|
B:HEM515
|
3.0
|
17.6
|
1.0
|
C1C
|
B:HEM515
|
3.0
|
19.9
|
1.0
|
C4D
|
B:HEM515
|
3.0
|
11.7
|
1.0
|
C1A
|
B:HEM515
|
3.0
|
16.7
|
1.0
|
C4A
|
B:HEM515
|
3.0
|
17.6
|
1.0
|
C1B
|
B:HEM515
|
3.1
|
16.9
|
1.0
|
C4B
|
B:HEM515
|
3.1
|
19.0
|
1.0
|
CE
|
B:LYS133
|
3.1
|
14.3
|
1.0
|
S
|
B:SO41502
|
3.3
|
43.4
|
1.0
|
CHD
|
B:HEM515
|
3.3
|
16.0
|
1.0
|
CHA
|
B:HEM515
|
3.4
|
13.0
|
1.0
|
CHC
|
B:HEM515
|
3.4
|
17.2
|
1.0
|
CHB
|
B:HEM515
|
3.4
|
18.6
|
1.0
|
O4
|
B:SO41502
|
3.7
|
44.5
|
1.0
|
O2
|
B:SO41502
|
3.9
|
42.3
|
1.0
|
C2C
|
B:HEM515
|
4.2
|
17.6
|
1.0
|
C2D
|
B:HEM515
|
4.2
|
14.9
|
1.0
|
NE2
|
B:HIS282
|
4.2
|
18.6
|
1.0
|
C3C
|
B:HEM515
|
4.2
|
17.5
|
1.0
|
C3A
|
B:HEM515
|
4.3
|
15.6
|
1.0
|
C3D
|
B:HEM515
|
4.3
|
16.2
|
1.0
|
C2A
|
B:HEM515
|
4.3
|
16.9
|
1.0
|
O
|
B:HOH1614
|
4.3
|
22.0
|
1.0
|
C2B
|
B:HEM515
|
4.3
|
15.3
|
1.0
|
C3B
|
B:HEM515
|
4.4
|
18.2
|
1.0
|
O3
|
B:SO41502
|
4.4
|
40.5
|
1.0
|
CD
|
B:LYS133
|
4.5
|
17.4
|
1.0
|
CMD
|
B:HEM517
|
4.9
|
15.3
|
1.0
|
CD2
|
B:HIS282
|
4.9
|
14.8
|
1.0
|
O
|
B:HOH1534
|
5.0
|
18.9
|
1.0
|
|
Iron binding site 7 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 7 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe516
b:17.2
occ:1.00
|
FE
|
B:HEM516
|
0.0
|
17.2
|
1.0
|
ND
|
B:HEM516
|
1.9
|
15.9
|
1.0
|
NB
|
B:HEM516
|
1.9
|
16.4
|
1.0
|
NA
|
B:HEM516
|
1.9
|
15.9
|
1.0
|
NC
|
B:HEM516
|
2.0
|
17.2
|
1.0
|
NE2
|
B:HIS171
|
2.0
|
16.6
|
1.0
|
NE2
|
B:HIS318
|
2.0
|
16.6
|
1.0
|
CE1
|
B:HIS171
|
3.0
|
15.0
|
1.0
|
C1B
|
B:HEM516
|
3.0
|
15.4
|
1.0
|
C4A
|
B:HEM516
|
3.0
|
14.6
|
1.0
|
C1D
|
B:HEM516
|
3.0
|
16.1
|
1.0
|
C4D
|
B:HEM516
|
3.0
|
15.9
|
1.0
|
CE1
|
B:HIS318
|
3.0
|
16.2
|
1.0
|
C4C
|
B:HEM516
|
3.0
|
13.8
|
1.0
|
CD2
|
B:HIS171
|
3.0
|
14.9
|
1.0
|
C1A
|
B:HEM516
|
3.0
|
15.1
|
1.0
|
CD2
|
B:HIS318
|
3.0
|
16.3
|
1.0
|
C4B
|
B:HEM516
|
3.0
|
12.9
|
1.0
|
C1C
|
B:HEM516
|
3.1
|
14.1
|
1.0
|
CHB
|
B:HEM516
|
3.3
|
14.0
|
1.0
|
CHD
|
B:HEM516
|
3.4
|
15.0
|
1.0
|
CHA
|
B:HEM516
|
3.4
|
15.4
|
1.0
|
CHC
|
B:HEM516
|
3.5
|
13.7
|
1.0
|
ND1
|
B:HIS171
|
4.1
|
17.1
|
1.0
|
ND1
|
B:HIS318
|
4.1
|
15.1
|
1.0
|
CG
|
B:HIS171
|
4.1
|
15.9
|
1.0
|
CG
|
B:HIS318
|
4.2
|
16.2
|
1.0
|
C2B
|
B:HEM516
|
4.2
|
14.7
|
1.0
|
C3A
|
B:HEM516
|
4.2
|
13.8
|
1.0
|
C3B
|
B:HEM516
|
4.2
|
12.7
|
1.0
|
C3D
|
B:HEM516
|
4.2
|
16.3
|
1.0
|
C2D
|
B:HEM516
|
4.2
|
16.1
|
1.0
|
C2A
|
B:HEM516
|
4.3
|
14.1
|
1.0
|
C3C
|
B:HEM516
|
4.3
|
14.1
|
1.0
|
C2C
|
B:HEM516
|
4.3
|
13.9
|
1.0
|
CE
|
B:MET305
|
4.5
|
15.4
|
1.0
|
|
Iron binding site 8 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 8 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe517
b:14.7
occ:1.00
|
FE
|
B:HEM517
|
0.0
|
14.7
|
1.0
|
ND
|
B:HEM517
|
2.0
|
14.1
|
1.0
|
NC
|
B:HEM517
|
2.0
|
16.3
|
1.0
|
NA
|
B:HEM517
|
2.0
|
13.7
|
1.0
|
NB
|
B:HEM517
|
2.0
|
13.7
|
1.0
|
NE2
|
B:HIS214
|
2.0
|
12.4
|
1.0
|
NE2
|
B:HIS101
|
2.0
|
13.2
|
1.0
|
CE1
|
B:HIS214
|
2.9
|
12.7
|
1.0
|
CE1
|
B:HIS101
|
3.0
|
16.0
|
1.0
|
C1C
|
B:HEM517
|
3.0
|
13.2
|
1.0
|
C4C
|
B:HEM517
|
3.0
|
14.9
|
1.0
|
C1A
|
B:HEM517
|
3.0
|
14.5
|
1.0
|
C1D
|
B:HEM517
|
3.0
|
14.1
|
1.0
|
C4A
|
B:HEM517
|
3.0
|
14.1
|
1.0
|
C1B
|
B:HEM517
|
3.0
|
15.8
|
1.0
|
C4D
|
B:HEM517
|
3.0
|
13.8
|
1.0
|
C4B
|
B:HEM517
|
3.1
|
12.3
|
1.0
|
CD2
|
B:HIS101
|
3.1
|
14.7
|
1.0
|
CD2
|
B:HIS214
|
3.1
|
13.7
|
1.0
|
CHD
|
B:HEM517
|
3.4
|
14.9
|
1.0
|
CHC
|
B:HEM517
|
3.4
|
14.1
|
1.0
|
CHB
|
B:HEM517
|
3.4
|
14.1
|
1.0
|
CHA
|
B:HEM517
|
3.4
|
14.2
|
1.0
|
ND1
|
B:HIS214
|
4.1
|
14.0
|
1.0
|
ND1
|
B:HIS101
|
4.1
|
14.9
|
1.0
|
CG
|
B:HIS214
|
4.2
|
13.9
|
1.0
|
CG
|
B:HIS101
|
4.2
|
15.8
|
1.0
|
C2C
|
B:HEM517
|
4.2
|
12.9
|
1.0
|
C2D
|
B:HEM517
|
4.2
|
15.6
|
1.0
|
C2A
|
B:HEM517
|
4.3
|
14.7
|
1.0
|
C3D
|
B:HEM517
|
4.3
|
13.9
|
1.0
|
C3A
|
B:HEM517
|
4.3
|
14.2
|
1.0
|
C3C
|
B:HEM517
|
4.3
|
15.1
|
1.0
|
C2B
|
B:HEM517
|
4.3
|
13.2
|
1.0
|
C3B
|
B:HEM517
|
4.3
|
13.8
|
1.0
|
|
Iron binding site 9 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 9 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe518
b:12.1
occ:1.00
|
FE
|
B:HEM518
|
0.0
|
12.1
|
1.0
|
NC
|
B:HEM518
|
1.9
|
12.8
|
1.0
|
NA
|
B:HEM518
|
1.9
|
13.1
|
1.0
|
ND
|
B:HEM518
|
1.9
|
13.6
|
1.0
|
NB
|
B:HEM518
|
2.0
|
13.5
|
1.0
|
NE2
|
B:HIS304
|
2.0
|
13.7
|
1.0
|
NE2
|
B:HIS411
|
2.0
|
12.4
|
1.0
|
CE1
|
B:HIS411
|
2.9
|
12.2
|
1.0
|
C1C
|
B:HEM518
|
3.0
|
14.0
|
1.0
|
CE1
|
B:HIS304
|
3.0
|
13.3
|
1.0
|
C1B
|
B:HEM518
|
3.0
|
13.2
|
1.0
|
C4D
|
B:HEM518
|
3.0
|
12.3
|
1.0
|
C4B
|
B:HEM518
|
3.0
|
9.9
|
1.0
|
C4A
|
B:HEM518
|
3.0
|
14.1
|
1.0
|
C1A
|
B:HEM518
|
3.0
|
13.4
|
1.0
|
C1D
|
B:HEM518
|
3.0
|
13.6
|
1.0
|
C4C
|
B:HEM518
|
3.0
|
13.2
|
1.0
|
CD2
|
B:HIS304
|
3.0
|
12.2
|
1.0
|
CD2
|
B:HIS411
|
3.2
|
12.5
|
1.0
|
CHC
|
B:HEM518
|
3.3
|
11.5
|
1.0
|
CHB
|
B:HEM518
|
3.4
|
13.4
|
1.0
|
CHA
|
B:HEM518
|
3.4
|
14.8
|
1.0
|
CHD
|
B:HEM518
|
3.4
|
10.2
|
1.0
|
ND1
|
B:HIS411
|
4.1
|
13.8
|
1.0
|
ND1
|
B:HIS304
|
4.1
|
13.5
|
1.0
|
CG
|
B:HIS304
|
4.2
|
14.3
|
1.0
|
C2C
|
B:HEM518
|
4.2
|
12.5
|
1.0
|
C2A
|
B:HEM518
|
4.2
|
14.2
|
1.0
|
C3A
|
B:HEM518
|
4.2
|
13.1
|
1.0
|
C2B
|
B:HEM518
|
4.2
|
12.0
|
1.0
|
CG
|
B:HIS411
|
4.2
|
12.0
|
1.0
|
C3D
|
B:HEM518
|
4.2
|
13.2
|
1.0
|
C3C
|
B:HEM518
|
4.3
|
12.9
|
1.0
|
C2D
|
B:HEM518
|
4.3
|
11.8
|
1.0
|
C3B
|
B:HEM518
|
4.3
|
11.6
|
1.0
|
|
Iron binding site 10 out
of 15 in 1qdb
Go back to
Iron Binding Sites List in 1qdb
Iron binding site 10 out
of 15 in the Cytochrome C Nitrite Reductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cytochrome C Nitrite Reductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe519
b:15.9
occ:1.00
|
FE
|
B:HEM519
|
0.0
|
15.9
|
1.0
|
NC
|
B:HEM519
|
1.9
|
16.4
|
1.0
|
NA
|
B:HEM519
|
1.9
|
16.9
|
1.0
|
ND
|
B:HEM519
|
1.9
|
15.3
|
1.0
|
NB
|
B:HEM519
|
2.0
|
16.2
|
1.0
|
NE2
|
B:HIS336
|
2.0
|
20.7
|
1.0
|
NE2
|
B:HIS293
|
2.0
|
15.8
|
1.0
|
CE1
|
B:HIS336
|
2.9
|
24.7
|
1.0
|
C4A
|
B:HEM519
|
3.0
|
16.1
|
1.0
|
CE1
|
B:HIS293
|
3.0
|
13.4
|
1.0
|
C1B
|
B:HEM519
|
3.0
|
15.1
|
1.0
|
C1C
|
B:HEM519
|
3.0
|
14.4
|
1.0
|
C1A
|
B:HEM519
|
3.0
|
16.1
|
1.0
|
C4D
|
B:HEM519
|
3.0
|
17.7
|
1.0
|
C1D
|
B:HEM519
|
3.0
|
17.8
|
1.0
|
C4C
|
B:HEM519
|
3.0
|
15.4
|
1.0
|
C4B
|
B:HEM519
|
3.0
|
15.4
|
1.0
|
CD2
|
B:HIS293
|
3.0
|
12.6
|
1.0
|
CD2
|
B:HIS336
|
3.1
|
22.9
|
1.0
|
CHB
|
B:HEM519
|
3.4
|
14.7
|
1.0
|
CHC
|
B:HEM519
|
3.4
|
14.5
|
1.0
|
CHA
|
B:HEM519
|
3.4
|
15.8
|
1.0
|
CHD
|
B:HEM519
|
3.4
|
15.8
|
1.0
|
ND1
|
B:HIS336
|
4.1
|
24.1
|
1.0
|
ND1
|
B:HIS293
|
4.1
|
13.9
|
1.0
|
CG
|
B:HIS293
|
4.2
|
12.1
|
1.0
|
CG
|
B:HIS336
|
4.2
|
24.9
|
1.0
|
C3A
|
B:HEM519
|
4.2
|
15.3
|
1.0
|
C2A
|
B:HEM519
|
4.2
|
15.8
|
1.0
|
C2B
|
B:HEM519
|
4.2
|
15.7
|
1.0
|
C2C
|
B:HEM519
|
4.2
|
16.2
|
1.0
|
C3D
|
B:HEM519
|
4.2
|
19.2
|
1.0
|
C2D
|
B:HEM519
|
4.3
|
18.8
|
1.0
|
C3C
|
B:HEM519
|
4.3
|
16.4
|
1.0
|
C3B
|
B:HEM519
|
4.3
|
15.0
|
1.0
|
CBC
|
B:HEM518
|
4.8
|
12.2
|
1.0
|
|
Reference:
O.Einsle,
A.Messerschmidt,
P.Stach,
G.P.Bourenkov,
H.D.Bartunik,
R.Huber,
P.M.Kroneck.
Structure of Cytochrome C Nitrite Reductase. Nature V. 400 476 1999.
ISSN: ISSN 0028-0836
PubMed: 10440380
DOI: 10.1038/22802
Page generated: Sat Aug 3 13:24:08 2024
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