Iron in PDB 1qgh: The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.

The structure of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site., PDB code: 1qgh was solved by A.Ilari, S.Stefanini, E.Chiancone, D.Tsernoglou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	87.540, 137.500, 173.360, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. (pdb code 1qgh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site., PDB code: 1qgh:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe157 b:10.0 occ:1.00 OD2 G:ASP58 1.8 20.0 1.0 OE2 G:GLU62 2.1 23.0 1.0 NE2 E:HIS31 2.5 9.2 1.0 CG G:ASP58 2.8 16.0 1.0 CD G:GLU62 3.0 11.1 1.0 OD1 G:ASP58 3.1 22.5 1.0 O E:HOH197 3.1 1.0 1.0 CE1 E:HIS31 3.2 11.0 1.0 OE1 G:GLU62 3.4 42.9 1.0 OD2 E:ASP47 3.7 99.1 1.0 CD2 E:HIS31 3.7 10.3 1.0 OD1 E:ASP47 3.8 89.9 1.0 NE2 E:HIS43 4.1 10.2 1.0 CB G:ASP58 4.2 5.6 1.0 CE1 E:HIS43 4.2 10.5 1.0 CG E:ASP47 4.2 77.7 1.0 CG G:GLU62 4.3 9.2 1.0 ND1 E:HIS31 4.5 15.0 1.0 CG E:HIS31 4.7 9.9 1.0 NE1 E:TRP32 4.7 1.9 1.0 CD1 E:TRP32 5.0 1.9 1.0

Iron binding site 2 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe157 b:9.6 occ:1.00 OD2 E:ASP58 1.8 20.0 1.0 OE2 E:GLU62 2.0 21.9 1.0 NE2 G:HIS31 2.4 9.5 1.0 CG E:ASP58 2.8 16.4 1.0 CD E:GLU62 3.0 11.0 1.0 OD1 E:ASP58 3.1 22.8 1.0 CE1 G:HIS31 3.3 11.7 1.0 OE1 E:GLU62 3.3 42.9 1.0 CD2 G:HIS31 3.5 10.1 1.0 OD2 G:ASP47 3.8 99.0 1.0 OD1 G:ASP47 3.8 89.6 1.0 NE2 G:HIS43 4.1 10.3 1.0 CE1 G:HIS43 4.2 9.9 1.0 CB E:ASP58 4.2 6.2 1.0 CG G:ASP47 4.2 77.5 1.0 CG E:GLU62 4.2 9.8 1.0 ND1 G:HIS31 4.5 14.6 1.0 CG G:HIS31 4.6 9.3 1.0 NE1 G:TRP32 4.8 2.2 1.0

Iron binding site 3 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe157 b:11.2 occ:1.00 OD2 A:ASP58 2.0 18.8 1.0 OE2 A:GLU62 2.1 22.8 1.0 NE2 C:HIS31 2.2 9.5 1.0 CE1 C:HIS31 3.0 11.7 1.0 CD A:GLU62 3.0 11.7 1.0 CG A:ASP58 3.0 16.1 1.0 OD1 A:ASP58 3.3 23.8 1.0 OE1 A:GLU62 3.3 43.0 1.0 CD2 C:HIS31 3.4 10.8 1.0 OD2 C:ASP47 3.6 99.1 1.0 OD1 C:ASP47 3.8 89.9 1.0 NE2 C:HIS43 4.0 10.6 1.0 CG C:ASP47 4.1 77.7 1.0 CE1 C:HIS43 4.2 11.0 1.0 ND1 C:HIS31 4.2 14.8 1.0 CG A:GLU62 4.3 10.0 1.0 CB A:ASP58 4.4 5.4 1.0 CG C:HIS31 4.4 8.6 1.0 NE1 C:TRP32 5.0 2.7 1.0

Iron binding site 4 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe157 b:13.3 occ:1.00 OD2 C:ASP58 1.8 18.8 1.0 OE2 C:GLU62 2.2 22.9 1.0 NE2 A:HIS31 2.4 10.5 1.0 CG C:ASP58 2.8 15.3 1.0 CD C:GLU62 3.0 10.8 1.0 OD1 C:ASP58 3.2 22.7 1.0 CE1 A:HIS31 3.2 11.6 1.0 O A:HOH158 3.2 3.3 1.0 OE1 C:GLU62 3.3 42.8 1.0 CD2 A:HIS31 3.5 10.6 1.0 OD1 A:ASP47 3.7 89.7 1.0 OD2 A:ASP47 3.8 98.9 1.0 NE2 A:HIS43 4.1 10.3 1.0 CB C:ASP58 4.2 5.6 1.0 CG A:ASP47 4.2 77.7 1.0 CG C:GLU62 4.3 10.3 1.0 CE1 A:HIS43 4.3 10.8 1.0 ND1 A:HIS31 4.4 14.5 1.0 CG A:HIS31 4.6 9.6 1.0 NE1 A:TRP32 4.8 1.5 1.0

Iron binding site 5 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe157 b:9.9 occ:1.00 OD2 I:ASP58 1.9 19.6 1.0 OE2 I:GLU62 2.1 21.7 1.0 NE2 K:HIS31 2.2 9.8 1.0 CG I:ASP58 2.8 15.5 1.0 CD I:GLU62 3.0 10.6 1.0 CE1 K:HIS31 3.1 11.2 1.0 OD1 I:ASP58 3.1 23.4 1.0 CD2 K:HIS31 3.3 11.2 1.0 OE1 I:GLU62 3.4 42.3 1.0 OD1 K:ASP47 3.7 89.7 1.0 OD2 K:ASP47 3.7 98.9 1.0 NE2 K:HIS43 4.1 10.4 1.0 CG K:ASP47 4.1 77.5 1.0 CB I:ASP58 4.2 5.9 1.0 CE1 K:HIS43 4.2 10.5 1.0 CG I:GLU62 4.3 9.4 1.0 ND1 K:HIS31 4.3 15.5 1.0 CG K:HIS31 4.4 9.5 1.0 O K:HOH167 4.6 22.7 1.0 NE1 K:TRP32 4.7 2.0 1.0

Iron binding site 6 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe157 b:19.1 occ:1.00 OD2 H:ASP58 1.8 19.1 1.0 OE2 H:GLU62 1.9 22.9 1.0 NE2 F:HIS31 2.3 9.7 1.0 CG H:ASP58 2.8 16.7 1.0 CD H:GLU62 3.0 11.4 1.0 CE1 F:HIS31 3.1 12.7 1.0 OD1 H:ASP58 3.1 23.5 1.0 CD2 F:HIS31 3.3 10.4 1.0 OE1 H:GLU62 3.4 43.4 1.0 O F:HOH181 3.7 35.4 1.0 OD2 F:ASP47 3.8 98.8 1.0 OD1 F:ASP47 3.8 89.8 1.0 NE2 F:HIS43 4.0 10.2 1.0 CG F:ASP47 4.1 77.5 1.0 CE1 F:HIS43 4.2 10.8 1.0 O F:HOH160 4.2 34.8 1.0 CB H:ASP58 4.2 5.7 1.0 ND1 F:HIS31 4.3 15.2 1.0 CG H:GLU62 4.3 9.2 1.0 CG F:HIS31 4.4 10.0 1.0 NE1 F:TRP32 4.9 3.6 1.0

Iron binding site 7 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe157 b:12.3 occ:1.00 OD2 J:ASP58 1.7 19.2 1.0 OE2 J:GLU62 2.0 22.8 1.0 NE2 L:HIS31 2.4 8.6 1.0 O J:HOH161 2.5 31.2 1.0 CG J:ASP58 2.7 16.0 1.0 CD J:GLU62 2.9 11.1 1.0 OD1 J:ASP58 3.0 23.6 1.0 CE1 L:HIS31 3.2 11.0 1.0 OE1 J:GLU62 3.3 42.3 1.0 CD2 L:HIS31 3.4 10.8 1.0 OD2 L:ASP47 3.7 99.0 1.0 OD1 L:ASP47 3.8 89.7 1.0 CB J:ASP58 4.1 5.6 1.0 CG J:GLU62 4.1 9.9 1.0 CG L:ASP47 4.2 77.7 1.0 NE2 L:HIS43 4.2 10.5 1.0 CE1 L:HIS43 4.4 9.9 1.0 ND1 L:HIS31 4.4 15.1 1.0 CG L:HIS31 4.5 8.7 1.0 NE1 L:TRP32 4.8 1.8 1.0

Iron binding site 8 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe157 b:15.2 occ:1.00 OD2 L:ASP58 1.8 20.2 1.0 OE2 L:GLU62 1.9 22.5 1.0 NE2 J:HIS31 2.3 9.9 1.0 O L:HOH158 2.5 29.0 1.0 CG L:ASP58 2.7 15.7 1.0 CD L:GLU62 2.9 11.2 1.0 OD1 L:ASP58 3.1 23.0 1.0 CE1 J:HIS31 3.2 11.7 1.0 OE1 L:GLU62 3.3 42.6 1.0 CD2 J:HIS31 3.3 11.0 1.0 OD2 J:ASP47 3.8 99.0 1.0 OD1 J:ASP47 3.8 89.9 1.0 CB L:ASP58 4.1 5.9 1.0 CG L:GLU62 4.2 9.6 1.0 NE2 J:HIS43 4.2 10.5 1.0 CE1 J:HIS43 4.2 10.1 1.0 CG J:ASP47 4.2 77.9 1.0 ND1 J:HIS31 4.3 15.0 1.0 CG J:HIS31 4.4 8.9 1.0 NE1 J:TRP32 4.7 2.8 1.0 CD1 J:TRP32 4.9 1.7 1.0

Iron binding site 9 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe157 b:14.5 occ:1.00 OD2 K:ASP58 1.7 20.5 1.0 OE2 K:GLU62 1.9 22.9 1.0 NE2 I:HIS31 2.5 10.5 1.0 CG K:ASP58 2.8 15.8 1.0 CD K:GLU62 2.8 11.2 1.0 OD1 K:ASP58 3.2 23.6 1.0 OE1 K:GLU62 3.2 42.4 1.0 CE1 I:HIS31 3.3 11.4 1.0 CD2 I:HIS31 3.6 10.4 1.0 OD2 I:ASP47 3.8 98.9 1.0 OD1 I:ASP47 3.8 89.7 1.0 NE2 I:HIS43 4.1 10.8 1.0 CG K:GLU62 4.1 10.6 1.0 CB K:ASP58 4.1 6.0 1.0 CG I:ASP47 4.2 77.5 1.0 CE1 I:HIS43 4.3 9.8 1.0 ND1 I:HIS31 4.5 15.2 1.0 CG I:HIS31 4.6 9.3 1.0 NE1 I:TRP32 4.9 2.8 1.0

Iron binding site 10 out of 12 in the The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The X-Ray Structure of the Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site. within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe157 b:10.2 occ:1.00 OD2 B:ASP58 1.9 18.8 1.0 OE2 B:GLU62 2.0 22.9 1.0 NE2 D:HIS31 2.3 9.5 1.0 CG B:ASP58 2.9 15.7 1.0 CD B:GLU62 2.9 11.4 1.0 CE1 D:HIS31 3.2 10.9 1.0 OD1 B:ASP58 3.2 24.2 1.0 OE1 B:GLU62 3.3 42.4 1.0 CD2 D:HIS31 3.4 10.6 1.0 OD2 D:ASP47 3.7 99.0 1.0 OD1 D:ASP47 3.9 89.5 1.0 NE2 D:HIS43 4.0 11.2 1.0 CE1 D:HIS43 4.1 10.4 1.0 CG D:ASP47 4.2 77.6 1.0 CG B:GLU62 4.3 10.3 1.0 CB B:ASP58 4.3 5.1 1.0 ND1 D:HIS31 4.3 15.3 1.0 CG D:HIS31 4.5 9.7 1.0 NE1 D:TRP32 4.8 1.8 1.0

A.Ilari, S.Stefanini, E.Chiancone, D.Tsernoglou. The Dodecameric Ferritin From Listeria Innocua Contains A Novel Intersubunit Iron-Binding Site. Nat.Struct.Biol. V. 7 38 2000.
ISSN: ISSN 1072-8368
PubMed: 10625425
DOI: 10.1038/71236