Atomistry » Iron » PDB 1q5e-1qom » 1qn2
Atomistry »
  Iron »
    PDB 1q5e-1qom »
      1qn2 »

Iron in PDB 1qn2: Cytochrome Ch From Methylobacterium Extorquens

Protein crystallography data

The structure of Cytochrome Ch From Methylobacterium Extorquens, PDB code: 1qn2 was solved by J.Read, R.Gill, S.L.Dales, J.B.Cooper, S.P.Wood, C.Anthony, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.01
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 33.760, 57.570, 50.950, 67.81, 89.33, 74.40
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome Ch From Methylobacterium Extorquens (pdb code 1qn2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cytochrome Ch From Methylobacterium Extorquens, PDB code: 1qn2:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 1qn2

Go back to Iron Binding Sites List in 1qn2
Iron binding site 1 out of 3 in the Cytochrome Ch From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome Ch From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe101

b:21.6
occ:1.00
FE A:HEC101 0.0 21.6 1.0
NE2 A:HIS18 2.1 19.7 1.0
ND A:HEC101 2.1 14.9 1.0
NC A:HEC101 2.1 18.8 1.0
NB A:HEC101 2.1 17.4 1.0
NA A:HEC101 2.1 17.5 1.0
SD A:MET78 2.4 18.4 1.0
CD2 A:HIS18 2.9 16.7 1.0
C1D A:HEC101 3.0 14.2 1.0
C4C A:HEC101 3.0 16.7 1.0
C1B A:HEC101 3.1 19.1 1.0
C4D A:HEC101 3.1 18.9 1.0
C1C A:HEC101 3.1 19.7 1.0
C4A A:HEC101 3.1 19.9 1.0
C4B A:HEC101 3.1 14.4 1.0
C1A A:HEC101 3.1 16.8 1.0
CE1 A:HIS18 3.1 19.3 1.0
CHD A:HEC101 3.4 15.2 1.0
CE A:MET78 3.4 15.3 1.0
CHA A:HEC101 3.4 16.8 1.0
CHB A:HEC101 3.4 17.1 1.0
CHC A:HEC101 3.5 13.0 1.0
CG A:MET78 3.5 23.1 1.0
CG A:HIS18 4.1 18.1 1.0
ND1 A:HIS18 4.2 23.1 1.0
C2D A:HEC101 4.2 19.3 1.0
C3D A:HEC101 4.2 14.0 1.0
C3C A:HEC101 4.2 14.8 1.0
C2C A:HEC101 4.2 19.7 1.0
C2B A:HEC101 4.2 15.0 1.0
C2A A:HEC101 4.2 16.3 1.0
C3A A:HEC101 4.2 17.8 1.0
C3B A:HEC101 4.2 14.7 1.0
CB A:MET78 4.4 19.3 1.0

Iron binding site 2 out of 3 in 1qn2

Go back to Iron Binding Sites List in 1qn2
Iron binding site 2 out of 3 in the Cytochrome Ch From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome Ch From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe101

b:18.8
occ:1.00
FE B:HEC101 0.0 18.8 1.0
NE2 B:HIS18 1.9 13.8 1.0
ND B:HEC101 2.1 16.3 1.0
NB B:HEC101 2.1 21.5 1.0
NC B:HEC101 2.1 19.2 1.0
NA B:HEC101 2.1 15.6 1.0
SD B:MET78 2.3 21.6 1.0
CE1 B:HIS18 2.8 13.6 1.0
CD2 B:HIS18 2.9 15.9 1.0
C1D B:HEC101 3.0 17.4 1.0
C1B B:HEC101 3.0 18.7 1.0
C4B B:HEC101 3.1 21.8 1.0
C4C B:HEC101 3.1 19.6 1.0
C4A B:HEC101 3.1 18.1 1.0
C1C B:HEC101 3.1 21.6 1.0
C4D B:HEC101 3.1 17.0 1.0
C1A B:HEC101 3.1 18.9 1.0
CE B:MET78 3.4 17.1 1.0
CHD B:HEC101 3.4 19.7 1.0
CHB B:HEC101 3.4 15.4 1.0
CHC B:HEC101 3.4 27.5 1.0
CHA B:HEC101 3.5 19.9 1.0
CG B:MET78 3.6 16.0 1.0
ND1 B:HIS18 4.0 13.8 1.0
CG B:HIS18 4.0 17.2 1.0
C2D B:HEC101 4.2 16.8 1.0
C2B B:HEC101 4.2 25.7 1.0
C3D B:HEC101 4.2 15.4 1.0
C3B B:HEC101 4.2 18.1 1.0
C2C B:HEC101 4.2 19.3 1.0
C3C B:HEC101 4.2 14.9 1.0
C3A B:HEC101 4.3 14.8 1.0
C2A B:HEC101 4.3 15.3 1.0
CB B:MET78 4.3 14.2 1.0
NE1 B:TRP65 5.0 14.2 1.0

Iron binding site 3 out of 3 in 1qn2

Go back to Iron Binding Sites List in 1qn2
Iron binding site 3 out of 3 in the Cytochrome Ch From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cytochrome Ch From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.1
occ:1.00
FE C:HEC101 0.0 18.1 1.0
NE2 C:HIS18 1.9 13.4 1.0
NC C:HEC101 2.1 15.6 1.0
NA C:HEC101 2.1 15.9 1.0
NB C:HEC101 2.1 13.6 1.0
ND C:HEC101 2.1 15.6 1.0
SD C:MET78 2.3 20.1 1.0
CE1 C:HIS18 2.9 13.3 1.0
CD2 C:HIS18 3.0 12.6 1.0
C1B C:HEC101 3.0 15.0 1.0
C4A C:HEC101 3.0 20.4 1.0
C4C C:HEC101 3.0 22.7 1.0
C1D C:HEC101 3.1 13.5 1.0
C4B C:HEC101 3.1 15.0 1.0
C1A C:HEC101 3.1 21.0 1.0
C1C C:HEC101 3.1 17.5 1.0
C4D C:HEC101 3.1 17.1 1.0
CHD C:HEC101 3.4 16.0 1.0
CHB C:HEC101 3.4 13.9 1.0
CE C:MET78 3.4 20.9 1.0
CHC C:HEC101 3.5 17.5 1.0
CHA C:HEC101 3.5 17.8 1.0
CG C:MET78 3.6 18.1 1.0
ND1 C:HIS18 4.0 13.6 1.0
CG C:HIS18 4.1 12.6 1.0
C2B C:HEC101 4.2 14.6 1.0
C3A C:HEC101 4.2 19.9 1.0
C2A C:HEC101 4.2 16.5 1.0
C3B C:HEC101 4.2 14.1 1.0
C3C C:HEC101 4.2 15.4 1.0
C2C C:HEC101 4.2 18.1 1.0
C2D C:HEC101 4.2 18.3 1.0
C3D C:HEC101 4.3 13.3 1.0
CB C:MET78 4.3 17.7 1.0

Reference:

J.Read, R.Gill, S.L.Dales, J.B.Cooper, S.P.Wood, C.Anthony. The Molecular Structure of An Unusual Cytochrome C2 Determined at 2.0A; the Cytochrome Ch From Methylobacterium Extorquens Protein Sci. V. 8 1232 1999.
ISSN: ISSN 0961-8368
PubMed: 10386873
DOI: 10.1110/PS.8.6.1232
Page generated: Sat Aug 3 13:35:42 2024

Last articles

Ca in 5S5X
Ca in 5S5Y
Ca in 5S5W
Ca in 5S5V
Ca in 5S5U
Ca in 5S5T
Ca in 5S5S
Ca in 5S5R
Ca in 5S5Q
Ca in 5S5P
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy