Atomistry » Iron » PDB 1q5e-1qom » 1qn2
Atomistry »
  Iron »
    PDB 1q5e-1qom »
      1qn2 »

Iron in PDB 1qn2: Cytochrome Ch From Methylobacterium Extorquens

Protein crystallography data

The structure of Cytochrome Ch From Methylobacterium Extorquens, PDB code: 1qn2 was solved by J.Read, R.Gill, S.L.Dales, J.B.Cooper, S.P.Wood, C.Anthony, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.01
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 33.760, 57.570, 50.950, 67.81, 89.33, 74.40
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome Ch From Methylobacterium Extorquens (pdb code 1qn2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cytochrome Ch From Methylobacterium Extorquens, PDB code: 1qn2:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 1qn2

Go back to Iron Binding Sites List in 1qn2
Iron binding site 1 out of 3 in the Cytochrome Ch From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome Ch From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe101

b:21.6
occ:1.00
FE A:HEC101 0.0 21.6 1.0
NE2 A:HIS18 2.1 19.7 1.0
ND A:HEC101 2.1 14.9 1.0
NC A:HEC101 2.1 18.8 1.0
NB A:HEC101 2.1 17.4 1.0
NA A:HEC101 2.1 17.5 1.0
SD A:MET78 2.4 18.4 1.0
CD2 A:HIS18 2.9 16.7 1.0
C1D A:HEC101 3.0 14.2 1.0
C4C A:HEC101 3.0 16.7 1.0
C1B A:HEC101 3.1 19.1 1.0
C4D A:HEC101 3.1 18.9 1.0
C1C A:HEC101 3.1 19.7 1.0
C4A A:HEC101 3.1 19.9 1.0
C4B A:HEC101 3.1 14.4 1.0
C1A A:HEC101 3.1 16.8 1.0
CE1 A:HIS18 3.1 19.3 1.0
CHD A:HEC101 3.4 15.2 1.0
CE A:MET78 3.4 15.3 1.0
CHA A:HEC101 3.4 16.8 1.0
CHB A:HEC101 3.4 17.1 1.0
CHC A:HEC101 3.5 13.0 1.0
CG A:MET78 3.5 23.1 1.0
CG A:HIS18 4.1 18.1 1.0
ND1 A:HIS18 4.2 23.1 1.0
C2D A:HEC101 4.2 19.3 1.0
C3D A:HEC101 4.2 14.0 1.0
C3C A:HEC101 4.2 14.8 1.0
C2C A:HEC101 4.2 19.7 1.0
C2B A:HEC101 4.2 15.0 1.0
C2A A:HEC101 4.2 16.3 1.0
C3A A:HEC101 4.2 17.8 1.0
C3B A:HEC101 4.2 14.7 1.0
CB A:MET78 4.4 19.3 1.0

Iron binding site 2 out of 3 in 1qn2

Go back to Iron Binding Sites List in 1qn2
Iron binding site 2 out of 3 in the Cytochrome Ch From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome Ch From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe101

b:18.8
occ:1.00
FE B:HEC101 0.0 18.8 1.0
NE2 B:HIS18 1.9 13.8 1.0
ND B:HEC101 2.1 16.3 1.0
NB B:HEC101 2.1 21.5 1.0
NC B:HEC101 2.1 19.2 1.0
NA B:HEC101 2.1 15.6 1.0
SD B:MET78 2.3 21.6 1.0
CE1 B:HIS18 2.8 13.6 1.0
CD2 B:HIS18 2.9 15.9 1.0
C1D B:HEC101 3.0 17.4 1.0
C1B B:HEC101 3.0 18.7 1.0
C4B B:HEC101 3.1 21.8 1.0
C4C B:HEC101 3.1 19.6 1.0
C4A B:HEC101 3.1 18.1 1.0
C1C B:HEC101 3.1 21.6 1.0
C4D B:HEC101 3.1 17.0 1.0
C1A B:HEC101 3.1 18.9 1.0
CE B:MET78 3.4 17.1 1.0
CHD B:HEC101 3.4 19.7 1.0
CHB B:HEC101 3.4 15.4 1.0
CHC B:HEC101 3.4 27.5 1.0
CHA B:HEC101 3.5 19.9 1.0
CG B:MET78 3.6 16.0 1.0
ND1 B:HIS18 4.0 13.8 1.0
CG B:HIS18 4.0 17.2 1.0
C2D B:HEC101 4.2 16.8 1.0
C2B B:HEC101 4.2 25.7 1.0
C3D B:HEC101 4.2 15.4 1.0
C3B B:HEC101 4.2 18.1 1.0
C2C B:HEC101 4.2 19.3 1.0
C3C B:HEC101 4.2 14.9 1.0
C3A B:HEC101 4.3 14.8 1.0
C2A B:HEC101 4.3 15.3 1.0
CB B:MET78 4.3 14.2 1.0
NE1 B:TRP65 5.0 14.2 1.0

Iron binding site 3 out of 3 in 1qn2

Go back to Iron Binding Sites List in 1qn2
Iron binding site 3 out of 3 in the Cytochrome Ch From Methylobacterium Extorquens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cytochrome Ch From Methylobacterium Extorquens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.1
occ:1.00
FE C:HEC101 0.0 18.1 1.0
NE2 C:HIS18 1.9 13.4 1.0
NC C:HEC101 2.1 15.6 1.0
NA C:HEC101 2.1 15.9 1.0
NB C:HEC101 2.1 13.6 1.0
ND C:HEC101 2.1 15.6 1.0
SD C:MET78 2.3 20.1 1.0
CE1 C:HIS18 2.9 13.3 1.0
CD2 C:HIS18 3.0 12.6 1.0
C1B C:HEC101 3.0 15.0 1.0
C4A C:HEC101 3.0 20.4 1.0
C4C C:HEC101 3.0 22.7 1.0
C1D C:HEC101 3.1 13.5 1.0
C4B C:HEC101 3.1 15.0 1.0
C1A C:HEC101 3.1 21.0 1.0
C1C C:HEC101 3.1 17.5 1.0
C4D C:HEC101 3.1 17.1 1.0
CHD C:HEC101 3.4 16.0 1.0
CHB C:HEC101 3.4 13.9 1.0
CE C:MET78 3.4 20.9 1.0
CHC C:HEC101 3.5 17.5 1.0
CHA C:HEC101 3.5 17.8 1.0
CG C:MET78 3.6 18.1 1.0
ND1 C:HIS18 4.0 13.6 1.0
CG C:HIS18 4.1 12.6 1.0
C2B C:HEC101 4.2 14.6 1.0
C3A C:HEC101 4.2 19.9 1.0
C2A C:HEC101 4.2 16.5 1.0
C3B C:HEC101 4.2 14.1 1.0
C3C C:HEC101 4.2 15.4 1.0
C2C C:HEC101 4.2 18.1 1.0
C2D C:HEC101 4.2 18.3 1.0
C3D C:HEC101 4.3 13.3 1.0
CB C:MET78 4.3 17.7 1.0

Reference:

J.Read, R.Gill, S.L.Dales, J.B.Cooper, S.P.Wood, C.Anthony. The Molecular Structure of An Unusual Cytochrome C2 Determined at 2.0A; the Cytochrome Ch From Methylobacterium Extorquens Protein Sci. V. 8 1232 1999.
ISSN: ISSN 0961-8368
PubMed: 10386873
DOI: 10.1110/PS.8.6.1232
Page generated: Sat Aug 3 13:35:42 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy