Iron in PDB 1qoa: Ferredoxin Mutation C49S
Protein crystallography data
The structure of Ferredoxin Mutation C49S, PDB code: 1qoa
was solved by
H.M.Holden,
M.M.Benning,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
1.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
37.730,
38.230,
148.160,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the Ferredoxin Mutation C49S
(pdb code 1qoa). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Ferredoxin Mutation C49S, PDB code: 1qoa:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1qoa
Go back to
Iron Binding Sites List in 1qoa
Iron binding site 1 out
of 4 in the Ferredoxin Mutation C49S
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Ferredoxin Mutation C49S within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe100
b:23.2
occ:1.00
|
FE1
|
A:FES100
|
0.0
|
23.2
|
1.0
|
S1
|
A:FES100
|
2.2
|
20.8
|
1.0
|
S2
|
A:FES100
|
2.2
|
23.9
|
1.0
|
SG
|
A:CYS41
|
2.2
|
21.9
|
1.0
|
SG
|
A:CYS46
|
2.3
|
24.5
|
1.0
|
FE2
|
A:FES100
|
2.8
|
23.0
|
1.0
|
CB
|
A:CYS46
|
3.3
|
23.4
|
1.0
|
CB
|
A:CYS41
|
3.4
|
20.9
|
1.0
|
N
|
A:CYS46
|
3.4
|
26.4
|
1.0
|
N
|
A:CYS41
|
3.6
|
19.4
|
1.0
|
N
|
A:ARG42
|
3.7
|
20.6
|
1.0
|
CA
|
A:CYS46
|
3.7
|
21.6
|
1.0
|
CA
|
A:CYS41
|
3.8
|
23.4
|
1.0
|
C
|
A:CYS46
|
4.0
|
19.0
|
1.0
|
N
|
A:ALA45
|
4.1
|
19.4
|
1.0
|
C
|
A:CYS41
|
4.2
|
29.9
|
1.0
|
SG
|
A:CYS79
|
4.3
|
21.7
|
1.0
|
O
|
A:CYS46
|
4.3
|
25.2
|
1.0
|
N
|
A:GLY44
|
4.3
|
24.4
|
1.0
|
C
|
A:ALA45
|
4.4
|
36.4
|
1.0
|
N
|
A:ALA43
|
4.4
|
18.8
|
1.0
|
OG
|
A:SER49
|
4.4
|
28.6
|
1.0
|
N
|
A:SER47
|
4.6
|
25.3
|
1.0
|
CA
|
A:ARG42
|
4.7
|
21.0
|
1.0
|
N
|
A:THR48
|
4.7
|
22.8
|
1.0
|
C
|
A:SER40
|
4.7
|
22.7
|
1.0
|
N
|
A:SER40
|
4.7
|
15.9
|
1.0
|
CA
|
A:GLY44
|
4.8
|
29.2
|
1.0
|
CA
|
A:ALA45
|
4.8
|
25.6
|
1.0
|
N
|
A:SER49
|
4.8
|
18.8
|
1.0
|
C
|
A:GLY44
|
4.9
|
27.1
|
1.0
|
CB
|
A:THR48
|
4.9
|
18.2
|
1.0
|
CB
|
A:SER40
|
4.9
|
22.6
|
1.0
|
|
Iron binding site 2 out
of 4 in 1qoa
Go back to
Iron Binding Sites List in 1qoa
Iron binding site 2 out
of 4 in the Ferredoxin Mutation C49S
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Ferredoxin Mutation C49S within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe100
b:23.0
occ:1.00
|
FE2
|
A:FES100
|
0.0
|
23.0
|
1.0
|
OG
|
A:SER49
|
2.0
|
28.6
|
1.0
|
S1
|
A:FES100
|
2.2
|
20.8
|
1.0
|
S2
|
A:FES100
|
2.2
|
23.9
|
1.0
|
SG
|
A:CYS79
|
2.3
|
21.7
|
1.0
|
FE1
|
A:FES100
|
2.8
|
23.2
|
1.0
|
CB
|
A:SER49
|
2.9
|
21.2
|
1.0
|
CB
|
A:CYS79
|
3.3
|
17.0
|
1.0
|
N
|
A:SER49
|
3.9
|
18.8
|
1.0
|
CA
|
A:SER49
|
4.0
|
17.2
|
1.0
|
N
|
A:CYS79
|
4.1
|
17.5
|
1.0
|
CA
|
A:CYS79
|
4.3
|
16.6
|
1.0
|
N
|
A:GLY44
|
4.3
|
24.4
|
1.0
|
CB
|
A:LEU77
|
4.4
|
19.6
|
1.0
|
SG
|
A:CYS41
|
4.4
|
21.9
|
1.0
|
N
|
A:ARG42
|
4.4
|
20.6
|
1.0
|
SG
|
A:CYS46
|
4.6
|
24.5
|
1.0
|
CA
|
A:ARG42
|
4.6
|
21.0
|
1.0
|
CA
|
A:GLY44
|
4.6
|
29.2
|
1.0
|
C
|
A:SER49
|
4.7
|
20.8
|
1.0
|
N
|
A:ALA43
|
4.7
|
18.8
|
1.0
|
CA
|
A:LEU77
|
4.9
|
27.8
|
1.0
|
C
|
A:LEU77
|
4.9
|
25.9
|
1.0
|
O
|
A:SER49
|
5.0
|
24.6
|
1.0
|
N
|
A:THR78
|
5.0
|
20.0
|
1.0
|
|
Iron binding site 3 out
of 4 in 1qoa
Go back to
Iron Binding Sites List in 1qoa
Iron binding site 3 out
of 4 in the Ferredoxin Mutation C49S
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Ferredoxin Mutation C49S within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe100
b:25.0
occ:1.00
|
FE1
|
B:FES100
|
0.0
|
25.0
|
1.0
|
SG
|
B:CYS41
|
2.2
|
25.6
|
1.0
|
S1
|
B:FES100
|
2.2
|
22.8
|
1.0
|
S2
|
B:FES100
|
2.2
|
23.3
|
1.0
|
SG
|
B:CYS46
|
2.2
|
24.9
|
1.0
|
FE2
|
B:FES100
|
2.8
|
22.9
|
1.0
|
CB
|
B:CYS46
|
3.3
|
22.5
|
1.0
|
CB
|
B:CYS41
|
3.4
|
22.9
|
1.0
|
N
|
B:CYS46
|
3.6
|
22.6
|
1.0
|
N
|
B:CYS41
|
3.6
|
22.9
|
1.0
|
N
|
B:ARG42
|
3.7
|
20.7
|
1.0
|
CA
|
B:CYS46
|
3.8
|
22.9
|
1.0
|
CA
|
B:CYS41
|
3.9
|
19.8
|
1.0
|
C
|
B:CYS46
|
4.1
|
27.1
|
1.0
|
N
|
B:ALA45
|
4.1
|
21.9
|
1.0
|
OG
|
B:SER49
|
4.2
|
19.3
|
1.0
|
C
|
B:CYS41
|
4.2
|
22.9
|
1.0
|
SG
|
B:CYS79
|
4.3
|
22.4
|
1.0
|
O
|
B:CYS46
|
4.3
|
25.6
|
1.0
|
N
|
B:GLY44
|
4.3
|
20.4
|
1.0
|
N
|
B:ALA43
|
4.4
|
21.6
|
1.0
|
C
|
B:ALA45
|
4.4
|
27.6
|
1.0
|
N
|
B:THR48
|
4.6
|
24.7
|
1.0
|
CA
|
B:ARG42
|
4.6
|
21.7
|
1.0
|
C
|
B:SER40
|
4.7
|
26.4
|
1.0
|
N
|
B:SER40
|
4.7
|
24.7
|
1.0
|
N
|
B:SER49
|
4.7
|
19.5
|
1.0
|
N
|
B:SER47
|
4.7
|
18.7
|
1.0
|
CA
|
B:GLY44
|
4.7
|
23.9
|
1.0
|
C
|
B:GLY44
|
4.8
|
30.8
|
1.0
|
CA
|
B:ALA45
|
4.8
|
20.2
|
1.0
|
CB
|
B:THR48
|
5.0
|
24.8
|
1.0
|
|
Iron binding site 4 out
of 4 in 1qoa
Go back to
Iron Binding Sites List in 1qoa
Iron binding site 4 out
of 4 in the Ferredoxin Mutation C49S
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Ferredoxin Mutation C49S within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe100
b:22.9
occ:1.00
|
FE2
|
B:FES100
|
0.0
|
22.9
|
1.0
|
OG
|
B:SER49
|
1.8
|
19.3
|
1.0
|
S2
|
B:FES100
|
2.2
|
23.3
|
1.0
|
S1
|
B:FES100
|
2.2
|
22.8
|
1.0
|
SG
|
B:CYS79
|
2.3
|
22.4
|
1.0
|
FE1
|
B:FES100
|
2.8
|
25.0
|
1.0
|
CB
|
B:SER49
|
3.0
|
19.0
|
1.0
|
CB
|
B:CYS79
|
3.3
|
20.5
|
1.0
|
N
|
B:SER49
|
3.7
|
19.5
|
1.0
|
CA
|
B:SER49
|
3.9
|
18.7
|
1.0
|
N
|
B:CYS79
|
4.1
|
20.3
|
1.0
|
CA
|
B:CYS79
|
4.3
|
20.4
|
1.0
|
N
|
B:GLY44
|
4.3
|
20.4
|
1.0
|
SG
|
B:CYS41
|
4.4
|
25.6
|
1.0
|
CB
|
B:LEU77
|
4.4
|
19.5
|
1.0
|
N
|
B:ARG42
|
4.5
|
20.7
|
1.0
|
SG
|
B:CYS46
|
4.5
|
24.9
|
1.0
|
CA
|
B:GLY44
|
4.6
|
23.9
|
1.0
|
CA
|
B:ARG42
|
4.6
|
21.7
|
1.0
|
C
|
B:SER49
|
4.7
|
27.9
|
1.0
|
N
|
B:ALA43
|
4.8
|
21.6
|
1.0
|
C
|
B:LEU77
|
4.9
|
17.0
|
1.0
|
CA
|
B:LEU77
|
4.9
|
19.1
|
1.0
|
C
|
B:THR48
|
4.9
|
19.6
|
1.0
|
CD2
|
B:LEU77
|
5.0
|
18.8
|
1.0
|
N
|
B:THR78
|
5.0
|
22.9
|
1.0
|
|
Reference:
J.K.Hurley,
A.M.Weber-Main,
A.E.Hodges,
M.T.Stankovich,
M.M.Benning,
H.M.Holden,
H.Cheng,
B.Xia,
J.L.Markley,
C.Genzor,
C.Gomez-Moreno,
R.Hafezi,
G.Tollin.
Iron-Sulfur Cluster Cysteine-to-Serine Mutants of Anabaena -2FE-2S- Ferredoxin Exhibit Unexpected Redox Properties and Are Competent in Electron Transfer to Ferredoxin:Nadp+ Reductase. Biochemistry V. 36 15109 1997.
ISSN: ISSN 0006-2960
PubMed: 9398238
DOI: 10.1021/BI972001I
Page generated: Sat Aug 3 13:38:43 2024
|