Iron in PDB 1sp8: 4-Hydroxyphenylpyruvate Dioxygenase

The structure of 4-Hydroxyphenylpyruvate Dioxygenase, PDB code: 1sp8 was solved by I.M.Fritze, L.Linden, J.Freigang, G.Auerbach, R.Huber, S.Steinbacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.84 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	89.000, 110.900, 174.800, 90.00, 90.00, 90.00
R / Rfree (%)	27.5 / 32.4

The binding sites of Iron atom in the 4-Hydroxyphenylpyruvate Dioxygenase (pdb code 1sp8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the 4-Hydroxyphenylpyruvate Dioxygenase, PDB code: 1sp8:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the 4-Hydroxyphenylpyruvate Dioxygenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 4-Hydroxyphenylpyruvate Dioxygenase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe500 b:76.3 occ:1.00 OE1 A:GLU387 2.1 55.9 1.0 O A:HOH501 2.1 61.5 1.0 O A:HOH502 2.1 57.4 1.0 NE2 A:HIS219 2.1 52.7 1.0 NE2 A:HIS301 2.2 51.4 1.0 CE1 A:HIS301 3.0 29.7 1.0 CE1 A:HIS219 3.0 37.2 1.0 CD A:GLU387 3.2 40.4 1.0 CD2 A:HIS219 3.2 39.4 1.0 CD2 A:HIS301 3.3 32.8 1.0 OE2 A:GLU387 3.6 36.3 1.0 ND1 A:HIS219 4.2 39.8 1.0 ND1 A:HIS301 4.2 31.2 1.0 CG A:HIS219 4.3 40.3 1.0 CG A:HIS301 4.4 35.2 1.0 CG A:GLU387 4.5 35.3 1.0 CB A:ALA303 4.5 28.7 1.0 CG2 A:VAL221 4.5 37.9 1.0 CE1 A:PHE374 4.6 41.1 1.0 CB A:GLU387 4.7 33.4 1.0 CD1 A:PHE412 4.7 39.4 1.0 O A:HOH718 4.8 59.0 1.0 CZ A:PHE374 4.8 38.0 1.0 O A:PHE412 4.9 49.1 1.0

Iron binding site 2 out of 4 in the 4-Hydroxyphenylpyruvate Dioxygenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 4-Hydroxyphenylpyruvate Dioxygenase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe500 b:62.5 occ:1.00 O B:HOH501 2.1 51.5 1.0 O B:HOH502 2.1 56.0 1.0 OE1 B:GLU387 2.1 41.3 1.0 O B:HOH503 2.1 52.8 1.0 NE2 B:HIS219 2.1 40.0 1.0 NE2 B:HIS301 2.1 39.8 1.0 CE1 B:HIS301 2.9 35.1 1.0 CE1 B:HIS219 3.0 37.0 1.0 CD2 B:HIS219 3.2 36.9 1.0 CD B:GLU387 3.2 40.8 1.0 CD2 B:HIS301 3.3 36.5 1.0 OE2 B:GLU387 3.7 38.9 1.0 ND1 B:HIS301 4.1 35.5 1.0 ND1 B:HIS219 4.2 38.6 1.0 CG B:HIS219 4.3 35.6 1.0 CG B:HIS301 4.3 33.9 1.0 CB B:ALA303 4.4 26.5 1.0 CG2 B:VAL221 4.4 31.0 1.0 CE1 B:PHE374 4.4 40.4 1.0 CG B:GLU387 4.5 35.5 1.0 CB B:GLU387 4.6 35.0 1.0 CZ B:PHE374 4.7 37.2 1.0

Iron binding site 3 out of 4 in the 4-Hydroxyphenylpyruvate Dioxygenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of 4-Hydroxyphenylpyruvate Dioxygenase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe500 b:40.8 occ:1.00 O C:HOH502 2.1 51.8 1.0 O C:HOH501 2.1 50.2 1.0 O C:HOH503 2.1 50.0 1.0 OE1 C:GLU387 2.1 47.2 1.0 NE2 C:HIS219 2.1 46.5 1.0 NE2 C:HIS301 2.2 44.4 1.0 CE1 C:HIS301 3.0 34.5 1.0 CE1 C:HIS219 3.0 41.9 1.0 CD C:GLU387 3.2 41.0 1.0 CD2 C:HIS219 3.2 40.8 1.0 CD2 C:HIS301 3.3 34.1 1.0 OE2 C:GLU387 3.6 43.2 1.0 ND1 C:HIS301 4.2 39.5 1.0 ND1 C:HIS219 4.2 44.0 1.0 CG C:HIS219 4.3 41.1 1.0 CG C:HIS301 4.3 37.8 1.0 CE1 C:PHE374 4.5 39.5 1.0 CG C:GLU387 4.5 37.4 1.0 CB C:ALA303 4.6 28.9 1.0 O C:HOH660 4.6 62.1 1.0 CG2 C:VAL221 4.7 35.8 1.0 CZ C:PHE374 4.7 41.4 1.0 CB C:GLU387 4.7 29.5 1.0 O C:PHE412 4.8 46.5 1.0

Iron binding site 4 out of 4 in the 4-Hydroxyphenylpyruvate Dioxygenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of 4-Hydroxyphenylpyruvate Dioxygenase within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe500 b:62.5 occ:1.00 OE1 D:GLU387 2.1 43.0 1.0 O D:HOH501 2.1 51.0 1.0 O D:HOH502 2.1 56.2 1.0 NE2 D:HIS219 2.1 39.8 1.0 O D:HOH503 2.1 53.2 1.0 NE2 D:HIS301 2.2 37.2 1.0 CE1 D:HIS301 3.0 29.2 1.0 CE1 D:HIS219 3.1 36.7 1.0 CD2 D:HIS219 3.1 33.0 1.0 CD D:GLU387 3.2 43.9 1.0 CD2 D:HIS301 3.2 32.7 1.0 OE2 D:GLU387 3.6 46.4 1.0 ND1 D:HIS301 4.2 31.1 1.0 ND1 D:HIS219 4.2 34.4 1.0 CG D:HIS219 4.3 33.7 1.0 CG D:HIS301 4.3 27.4 1.0 CE1 D:PHE374 4.4 40.8 1.0 CG2 D:VAL221 4.4 31.5 1.0 CG D:GLU387 4.5 38.7 1.0 CB D:ALA303 4.5 27.6 1.0 CB D:GLU387 4.7 35.5 1.0 CZ D:PHE374 4.8 38.1 1.0 CD1 D:PHE412 5.0 42.3 1.0 O D:PHE412 5.0 44.1 1.0

I.M.Fritze, L.Linden, J.Freigang, G.Auerbach, R.Huber, S.Steinbacher. The Crystal Structures of Zea Mays and Arabidopsis 4-Hydroxyphenylpyruvate Dioxygenase Plant Physiol. V. 134 1388 2004.
ISSN: ISSN 0032-0889
PubMed: 15084729
DOI: 10.1104/PP.103.034082