Iron in PDB 1sq3: Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.

The structure of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus., PDB code: 1sq3 was solved by E.Johnson, D.Cascio, S.Michael, I.Schroder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.70
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	184.502, 190.243, 179.407, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 21.8

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. (pdb code 1sq3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus., PDB code: 1sq3:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe901 b:50.9 occ:1.00 O A:HOH909 1.8 47.8 0.5 O A:HOH910 1.8 37.8 1.0 OE1 A:GLU52 2.0 9.7 1.0 OE1 A:GLU19 2.1 16.7 1.0 ND1 A:HIS55 2.4 18.1 1.0 CD A:GLU19 3.1 15.3 1.0 CD A:GLU52 3.1 11.5 1.0 CG A:HIS55 3.2 16.5 1.0 CE1 A:HIS55 3.3 16.6 1.0 FE A:FE902 3.4 47.4 1.0 OE2 A:GLU19 3.4 14.6 1.0 CB A:HIS55 3.5 16.1 1.0 OE2 A:GLU52 3.6 11.2 1.0 OE1 A:GLN129 4.1 16.5 1.0 CD2 A:HIS55 4.3 18.5 1.0 NE2 A:HIS55 4.3 16.6 1.0 CG A:GLU52 4.4 12.2 1.0 CG A:GLU19 4.4 14.5 1.0 CA A:GLU52 4.6 13.3 1.0 CB A:GLU52 4.7 13.1 1.0 CG1 A:VAL99 4.7 17.7 1.0 CB A:GLU19 4.9 15.4 1.0 OE1 A:GLU132 5.0 17.1 1.0

Iron binding site 2 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe902 b:47.4 occ:1.00 O A:HOH910 1.7 37.8 1.0 OE2 A:GLU96 1.8 13.6 1.0 OE2 A:GLU52 2.1 11.2 1.0 OE1 A:GLU132 2.2 17.1 1.0 CD A:GLU96 2.4 15.6 1.0 OE1 A:GLU96 2.4 16.7 1.0 CD A:GLU52 2.9 11.5 1.0 OE1 A:GLU52 3.1 9.7 1.0 CD A:GLU132 3.1 17.3 1.0 FE A:FE901 3.4 50.9 1.0 CG A:GLU132 3.5 16.7 1.0 CG A:GLU96 3.9 15.4 1.0 O A:HOH921 4.0 48.1 1.0 OE1 A:GLN129 4.0 16.5 1.0 CB A:GLU132 4.1 15.6 1.0 NE2 A:GLN48 4.1 13.2 1.0 OE2 A:GLU132 4.1 16.3 1.0 CG A:GLU52 4.3 12.2 1.0 OH A:TYR26 4.3 19.4 1.0 CE2 A:TYR26 4.5 15.0 1.0 O A:HOH909 4.7 47.8 0.5 NE2 A:GLN129 4.7 15.2 1.0 ND1 A:HIS55 4.8 18.1 1.0 CD A:GLN129 4.8 16.7 1.0 CE1 A:HIS55 4.8 16.6 1.0 CB A:GLU96 4.9 16.7 1.0 CZ A:TYR26 5.0 17.0 1.0

Iron binding site 3 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe903 b:55.2 occ:1.00 OE2 A:GLU128 1.9 18.3 1.0 OE2 A:GLU51 2.0 19.5 1.0 O A:HOH909 2.1 49.5 0.5 OE1 A:GLU131 2.1 20.8 1.0 OE2 A:GLU132 2.3 16.3 1.0 O A:HOH930 2.8 42.0 1.0 CD A:GLU51 3.0 17.2 1.0 CD A:GLU128 3.0 16.4 1.0 CD A:GLU131 3.2 19.2 1.0 OE1 A:GLU51 3.3 16.5 1.0 CD A:GLU132 3.3 17.3 1.0 OE1 A:GLU128 3.4 18.3 1.0 CG A:GLU132 3.7 16.7 1.0 OE2 A:GLU131 3.8 19.7 1.0 O A:HOH944 4.0 51.1 1.0 O A:HOH918 4.0 53.5 1.0 NE2 A:GLN48 4.3 13.2 1.0 CG A:GLU51 4.3 15.3 1.0 CG A:GLU128 4.3 16.6 1.0 OE1 A:GLU132 4.4 17.1 1.0 CG A:GLU131 4.4 17.3 1.0 CE1 A:HIS55 4.5 16.6 1.0 NE2 A:HIS55 4.5 16.6 1.0 O A:GLU128 4.8 15.5 1.0 OE1 A:GLN48 4.8 15.8 1.0 N A:GLU132 4.9 13.5 1.0 CA A:GLU132 4.9 15.7 1.0 CB A:GLU132 4.9 15.6 1.0 CB A:GLU131 5.0 14.9 1.0

Iron binding site 4 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe904 b:55.0 occ:1.00 OE1 B:GLU19 2.0 16.3 1.0 OE1 B:GLU52 2.1 11.2 1.0 ND1 B:HIS55 2.2 18.3 1.0 CD B:GLU19 2.9 17.1 1.0 FE B:FE905 3.0 57.9 1.0 CE1 B:HIS55 3.0 17.5 1.0 CD B:GLU52 3.1 12.1 1.0 OE2 B:GLU19 3.2 18.8 1.0 CG B:HIS55 3.2 17.3 1.0 OE2 B:GLU52 3.5 15.6 1.0 CB B:HIS55 3.6 16.2 1.0 OE1 B:GLN129 3.9 16.8 1.0 NE2 B:HIS55 4.2 18.0 1.0 CD2 B:HIS55 4.3 17.7 1.0 CG B:GLU19 4.3 15.3 1.0 CG B:GLU52 4.4 11.8 1.0 OE1 B:GLU132 4.6 13.5 1.0 CG1 B:VAL99 4.7 17.1 1.0 CB B:GLU52 4.8 12.8 1.0 CA B:GLU52 4.8 14.2 1.0 CB B:GLU19 4.8 15.3 1.0

Iron binding site 5 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe905 b:57.9 occ:1.00 OE2 B:GLU52 1.9 15.6 1.0 OE1 B:GLU132 2.0 13.5 1.0 OE2 B:GLU96 2.1 13.9 1.0 OE1 B:GLU96 2.5 17.8 1.0 CD B:GLU96 2.6 16.4 1.0 CD B:GLU52 2.8 12.1 1.0 CD B:GLU132 2.9 16.9 1.0 OE1 B:GLU52 3.0 11.2 1.0 FE B:FE904 3.0 55.0 1.0 CG B:GLU132 3.4 16.6 1.0 OE1 B:GLN129 3.6 16.8 1.0 OE2 B:GLU132 4.0 15.1 1.0 CG B:GLU96 4.2 16.2 1.0 CG B:GLU52 4.2 11.8 1.0 CB B:GLU132 4.2 16.5 1.0 ND1 B:HIS55 4.2 18.3 1.0 CE1 B:HIS55 4.2 17.5 1.0 NE2 B:GLN48 4.3 16.3 1.0 CD B:GLN129 4.5 16.4 1.0 OH B:TYR26 4.5 19.2 1.0 NE2 B:GLN129 4.6 15.1 1.0 OE1 B:GLU19 4.6 16.3 1.0 CG1 B:VAL99 4.6 17.1 1.0 CE2 B:TYR26 4.8 18.6 1.0

Iron binding site 6 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe906 b:68.6 occ:1.00 OE1 B:GLU131 2.0 23.9 1.0 OE2 B:GLU128 2.0 17.2 1.0 OE2 B:GLU51 2.1 20.4 1.0 OE2 B:GLU132 2.6 15.1 1.0 CD B:GLU131 3.0 21.9 1.0 CD B:GLU51 3.1 18.7 1.0 CD B:GLU128 3.1 17.5 1.0 OE2 B:GLU131 3.3 22.8 1.0 OE1 B:GLU51 3.5 19.7 1.0 OE1 B:GLU128 3.6 18.0 1.0 CD B:GLU132 3.7 16.9 1.0 O B:HOH908 4.0 39.9 1.0 CG B:GLU132 4.0 16.6 1.0 CG B:GLU131 4.3 18.6 1.0 CG B:GLU51 4.4 18.1 1.0 NE2 B:GLN48 4.4 16.3 1.0 CG B:GLU128 4.4 17.4 1.0 NH2 B:ARG163 4.6 19.9 1.0 CE1 B:HIS55 4.8 17.5 1.0 OE1 B:GLN48 4.8 20.9 1.0 NE2 B:HIS55 4.8 18.0 1.0 OE1 B:GLU132 4.8 13.5 1.0 O B:GLU128 4.8 17.6 1.0 CA B:GLU132 4.9 16.8 1.0 N B:GLU132 4.9 15.4 1.0 CB B:GLU131 4.9 16.7 1.0

Iron binding site 7 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe907 b:52.3 occ:1.00 OE1 C:GLU19 2.0 14.4 1.0 OE1 C:GLU52 2.0 10.2 1.0 O C:HOH922 2.2 50.7 1.0 ND1 C:HIS55 2.2 18.8 1.0 CD C:GLU19 3.0 15.9 1.0 CD C:GLU52 3.0 11.5 1.0 CE1 C:HIS55 3.1 17.2 1.0 FE C:FE908 3.2 58.5 1.0 OE2 C:GLU19 3.3 16.1 1.0 CG C:HIS55 3.3 16.9 1.0 OE2 C:GLU52 3.4 11.2 1.0 CB C:HIS55 3.6 16.3 1.0 OE1 C:GLN129 3.9 16.6 1.0 NE2 C:HIS55 4.2 17.8 1.0 CD2 C:HIS55 4.3 17.8 1.0 CG C:GLU19 4.4 14.8 1.0 CG C:GLU52 4.4 11.7 1.0 OE1 C:GLU132 4.7 16.0 1.0 CG1 C:VAL99 4.7 19.4 1.0 CA C:GLU52 4.7 13.9 1.0 CB C:GLU52 4.7 12.6 1.0 CB C:GLU19 4.9 15.0 1.0

Iron binding site 8 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe908 b:58.5 occ:1.00 OE2 C:GLU52 1.9 11.2 1.0 OE1 C:GLU132 1.9 16.0 1.0 OE2 C:GLU96 2.0 16.0 1.0 OE1 C:GLU96 2.5 17.1 1.0 CD C:GLU96 2.6 16.3 1.0 CD C:GLU52 2.8 11.5 1.0 CD C:GLU132 2.9 17.0 1.0 OE1 C:GLU52 3.1 10.2 1.0 FE C:FE907 3.2 52.3 1.0 CG C:GLU132 3.4 16.8 1.0 OE1 C:GLN129 3.9 16.6 1.0 OE2 C:GLU132 3.9 15.3 1.0 CG C:GLU96 4.1 15.8 1.0 CB C:GLU132 4.2 16.8 1.0 CG C:GLU52 4.2 11.7 1.0 O C:HOH922 4.3 50.7 1.0 NE2 C:GLN48 4.4 12.8 1.0 CE1 C:HIS55 4.4 17.2 1.0 ND1 C:HIS55 4.4 18.8 1.0 NE2 C:GLN129 4.6 14.7 1.0 OH C:TYR26 4.6 17.0 1.0 CD C:GLN129 4.6 16.0 1.0 CE2 C:TYR26 4.7 17.6 1.0 OE1 C:GLU19 4.8 14.4 1.0 CG1 C:VAL99 4.9 19.4 1.0

Iron binding site 9 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe909 b:55.3 occ:1.00 OE2 C:GLU51 1.9 19.4 1.0 OE1 C:GLU131 2.0 20.1 1.0 OE2 C:GLU128 2.1 18.3 1.0 O C:HOH911 2.3 44.9 1.0 OE2 C:GLU132 2.6 15.3 1.0 CD C:GLU51 3.0 18.0 1.0 CD C:GLU131 3.0 20.0 1.0 CD C:GLU128 3.1 16.8 1.0 OE1 C:GLU51 3.3 18.3 1.0 OE2 C:GLU131 3.4 20.0 1.0 OE1 C:GLU128 3.5 17.6 1.0 CD C:GLU132 3.6 17.0 1.0 CG C:GLU132 3.9 16.8 1.0 CG C:GLU51 4.3 16.1 1.0 CG C:GLU131 4.4 17.5 1.0 NE2 C:GLN48 4.4 12.8 1.0 CG C:GLU128 4.5 17.0 1.0 CE1 C:HIS55 4.6 17.2 1.0 NE2 C:HIS55 4.6 17.8 1.0 OE1 C:GLU132 4.7 16.0 1.0 O C:GLU128 4.8 16.1 1.0 N C:GLU132 4.9 14.7 1.0 CA C:GLU132 4.9 16.2 1.0 CB C:GLU131 5.0 15.9 1.0

Iron binding site 10 out of 36 in the Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structures of A Novel Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe910 b:50.6 occ:1.00 OE1 D:GLU52 1.9 10.7 1.0 OE1 D:GLU19 2.0 14.8 1.0 O D:HOH929 2.1 49.5 1.0 ND1 D:HIS55 2.3 20.1 1.0 CD D:GLU52 3.0 11.8 1.0 CD D:GLU19 3.0 16.9 1.0 CE1 D:HIS55 3.1 16.7 1.0 FE D:FE911 3.3 51.8 1.0 CG D:HIS55 3.3 16.5 1.0 OE2 D:GLU19 3.4 15.4 1.0 OE2 D:GLU52 3.4 6.4 1.0 CB D:HIS55 3.7 16.1 1.0 OE1 D:GLN129 3.7 17.7 1.0 NE2 D:HIS55 4.3 19.4 1.0 CG D:GLU52 4.3 11.3 1.0 CG D:GLU19 4.4 15.1 1.0 CD2 D:HIS55 4.4 18.5 1.0 CG1 D:VAL99 4.6 18.1 1.0 CB D:GLU52 4.7 12.3 1.0 CA D:GLU52 4.7 13.7 1.0 OE1 D:GLU132 4.7 16.9 1.0 CD D:GLN129 4.9 16.0 1.0 CB D:GLU19 4.9 15.1 1.0

E.Johnson, D.Cascio, M.R.Sawaya, M.Gingery, I.Schroder. Crystal Structures of A Tetrahedral Open Pore Ferritin From the Hyperthermophilic Archaeon Archaeoglobus Fulgidus. Structure V. 13 637 2005.
ISSN: ISSN 0969-2126
PubMed: 15837202
DOI: 10.1016/J.STR.2005.01.019