Iron in PDB 1y4z: The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Enzymatic activity of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
All present enzymatic activity of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol:
1.7.99.4;
Protein crystallography data
The structure of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol, PDB code: 1y4z
was solved by
M.G.Bertero,
R.A.Rothery,
N.Boroumand,
M.Palak,
F.Blasco,
N.Ginet,
J.H.Weiner,
N.C.J.Strynadka,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.75 /
2.00
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
154.456,
241.342,
140.014,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.8 /
23.3
|
Other elements in 1y4z:
The structure of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Iron atom in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
(pdb code 1y4z). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the
The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol, PDB code: 1y4z:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 1 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1801
b:22.6
occ:1.00
|
FE1
|
A:SF41801
|
0.0
|
22.6
|
1.0
|
S4
|
A:SF41801
|
2.3
|
21.1
|
1.0
|
S2
|
A:SF41801
|
2.3
|
22.0
|
1.0
|
S3
|
A:SF41801
|
2.3
|
24.1
|
1.0
|
SG
|
A:CYS57
|
2.3
|
19.1
|
1.0
|
FE4
|
A:SF41801
|
2.7
|
28.9
|
1.0
|
FE2
|
A:SF41801
|
2.7
|
29.8
|
1.0
|
FE3
|
A:SF41801
|
2.8
|
22.6
|
1.0
|
CB
|
A:CYS57
|
3.3
|
14.2
|
1.0
|
CA
|
A:GLY55
|
3.9
|
25.1
|
1.0
|
S1
|
A:SF41801
|
3.9
|
24.0
|
1.0
|
N
|
A:CYS57
|
4.0
|
17.9
|
1.0
|
C
|
A:GLY55
|
4.2
|
25.1
|
1.0
|
CA
|
A:CYS57
|
4.3
|
18.2
|
1.0
|
CA
|
A:GLY91
|
4.3
|
15.3
|
1.0
|
C
|
A:GLY91
|
4.3
|
15.1
|
1.0
|
N
|
A:SER56
|
4.4
|
24.3
|
1.0
|
NE1
|
A:TRP59
|
4.4
|
16.1
|
1.0
|
N
|
A:GLY91
|
4.5
|
14.7
|
1.0
|
ND1
|
A:HIS49
|
4.5
|
24.1
|
1.0
|
SG
|
A:CYS53
|
4.6
|
28.9
|
1.0
|
O
|
A:GLY91
|
4.6
|
17.3
|
1.0
|
N
|
A:CYS92
|
4.6
|
15.9
|
1.0
|
CG
|
A:PRO262
|
4.6
|
14.0
|
1.0
|
SG
|
A:CYS92
|
4.7
|
20.5
|
1.0
|
O
|
A:GLY55
|
4.8
|
23.2
|
1.0
|
N
|
A:GLY55
|
4.9
|
28.3
|
1.0
|
CB
|
A:CYS92
|
4.9
|
16.2
|
1.0
|
C
|
A:SER56
|
5.0
|
23.0
|
1.0
|
CB
|
A:PRO262
|
5.0
|
14.4
|
1.0
|
|
Iron binding site 2 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 2 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1801
b:29.8
occ:1.00
|
FE2
|
A:SF41801
|
0.0
|
29.8
|
1.0
|
SG
|
A:CYS92
|
2.2
|
20.5
|
1.0
|
S3
|
A:SF41801
|
2.3
|
24.1
|
1.0
|
S4
|
A:SF41801
|
2.3
|
21.1
|
1.0
|
S1
|
A:SF41801
|
2.3
|
24.0
|
1.0
|
FE4
|
A:SF41801
|
2.7
|
28.9
|
1.0
|
FE1
|
A:SF41801
|
2.7
|
22.6
|
1.0
|
FE3
|
A:SF41801
|
2.8
|
22.6
|
1.0
|
CB
|
A:CYS92
|
3.2
|
16.2
|
1.0
|
N
|
A:GLY95
|
3.7
|
16.8
|
1.0
|
S2
|
A:SF41801
|
3.9
|
22.0
|
1.0
|
N
|
A:CYS92
|
3.9
|
15.9
|
1.0
|
CA
|
A:GLY95
|
4.0
|
18.3
|
1.0
|
CA
|
A:CYS92
|
4.0
|
14.9
|
1.0
|
C
|
A:GLY91
|
4.4
|
15.1
|
1.0
|
O
|
A:CYS92
|
4.4
|
15.1
|
1.0
|
C
|
A:CYS92
|
4.5
|
16.2
|
1.0
|
ND1
|
A:HIS49
|
4.6
|
24.1
|
1.0
|
SG
|
A:CYS53
|
4.7
|
28.9
|
1.0
|
O
|
A:GLY91
|
4.8
|
17.3
|
1.0
|
CB
|
A:ARG94
|
4.9
|
17.3
|
1.0
|
SG
|
A:CYS57
|
4.9
|
19.1
|
1.0
|
C
|
A:ARG94
|
4.9
|
18.6
|
1.0
|
|
Iron binding site 3 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 3 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1801
b:22.6
occ:1.00
|
FE3
|
A:SF41801
|
0.0
|
22.6
|
1.0
|
ND1
|
A:HIS49
|
2.0
|
24.1
|
1.0
|
S2
|
A:SF41801
|
2.3
|
22.0
|
1.0
|
S4
|
A:SF41801
|
2.3
|
21.1
|
1.0
|
S1
|
A:SF41801
|
2.3
|
24.0
|
1.0
|
FE4
|
A:SF41801
|
2.7
|
28.9
|
1.0
|
FE1
|
A:SF41801
|
2.8
|
22.6
|
1.0
|
FE2
|
A:SF41801
|
2.8
|
29.8
|
1.0
|
CE1
|
A:HIS49
|
2.9
|
24.2
|
1.0
|
CG
|
A:HIS49
|
3.1
|
23.4
|
1.0
|
CB
|
A:HIS49
|
3.5
|
18.8
|
1.0
|
CA
|
A:GLY95
|
3.7
|
18.3
|
1.0
|
S3
|
A:SF41801
|
3.9
|
24.1
|
1.0
|
NE1
|
A:TRP59
|
4.0
|
16.1
|
1.0
|
NE2
|
A:HIS49
|
4.1
|
24.1
|
1.0
|
CD2
|
A:HIS49
|
4.2
|
21.9
|
1.0
|
OH
|
A:TYR1101
|
4.3
|
19.5
|
1.0
|
N
|
A:GLY95
|
4.4
|
16.8
|
1.0
|
SG
|
A:CYS53
|
4.8
|
28.9
|
1.0
|
CD1
|
A:TRP59
|
4.8
|
16.2
|
1.0
|
SG
|
A:CYS92
|
4.8
|
20.5
|
1.0
|
SG
|
A:CYS57
|
4.8
|
19.1
|
1.0
|
CE2
|
A:TRP59
|
4.8
|
17.9
|
1.0
|
CA
|
A:HIS49
|
4.8
|
20.5
|
1.0
|
CG1
|
A:VAL51
|
4.9
|
28.9
|
1.0
|
CB
|
A:CYS57
|
4.9
|
14.2
|
1.0
|
C
|
A:GLY95
|
4.9
|
16.5
|
1.0
|
N
|
A:HIS49
|
5.0
|
17.6
|
1.0
|
|
Iron binding site 4 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 4 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1801
b:28.9
occ:1.00
|
FE4
|
A:SF41801
|
0.0
|
28.9
|
1.0
|
SG
|
A:CYS53
|
2.3
|
28.9
|
1.0
|
S2
|
A:SF41801
|
2.3
|
22.0
|
1.0
|
S3
|
A:SF41801
|
2.3
|
24.1
|
1.0
|
S1
|
A:SF41801
|
2.3
|
24.0
|
1.0
|
FE2
|
A:SF41801
|
2.7
|
29.8
|
1.0
|
FE3
|
A:SF41801
|
2.7
|
22.6
|
1.0
|
FE1
|
A:SF41801
|
2.7
|
22.6
|
1.0
|
CB
|
A:CYS53
|
3.3
|
29.2
|
1.0
|
S4
|
A:SF41801
|
3.8
|
21.1
|
1.0
|
CG1
|
A:VAL51
|
4.0
|
28.9
|
1.0
|
CA
|
A:GLY55
|
4.1
|
25.1
|
1.0
|
N
|
A:GLY55
|
4.2
|
28.3
|
1.0
|
O
|
A:HOH4000
|
4.4
|
24.9
|
1.0
|
ND1
|
A:HIS49
|
4.5
|
24.1
|
1.0
|
N
|
A:SER56
|
4.6
|
24.3
|
1.0
|
CA
|
A:CYS53
|
4.6
|
29.9
|
1.0
|
SG
|
A:CYS92
|
4.7
|
20.5
|
1.0
|
C
|
A:GLY55
|
4.8
|
25.1
|
1.0
|
CB
|
A:HIS49
|
4.8
|
18.8
|
1.0
|
SG
|
A:CYS57
|
4.8
|
19.1
|
1.0
|
|
Iron binding site 5 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 5 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1802
b:24.1
occ:1.00
|
FE1
|
B:SF41802
|
0.0
|
24.1
|
1.0
|
S3
|
B:SF41802
|
2.3
|
25.2
|
1.0
|
S4
|
B:SF41802
|
2.3
|
21.8
|
1.0
|
SG
|
B:CYS263
|
2.3
|
18.7
|
1.0
|
S2
|
B:SF41802
|
2.3
|
23.3
|
1.0
|
FE2
|
B:SF41802
|
2.7
|
24.6
|
1.0
|
FE3
|
B:SF41802
|
2.8
|
23.0
|
1.0
|
FE4
|
B:SF41802
|
2.8
|
22.6
|
1.0
|
CB
|
B:CYS263
|
3.4
|
18.0
|
1.0
|
CA
|
B:CYS263
|
3.8
|
17.9
|
1.0
|
S1
|
B:SF41802
|
3.9
|
22.0
|
1.0
|
N
|
B:GLY265
|
4.0
|
16.5
|
1.0
|
N
|
B:VAL264
|
4.0
|
18.0
|
1.0
|
C
|
B:CYS263
|
4.1
|
17.6
|
1.0
|
CG1
|
B:ILE267
|
4.4
|
13.9
|
1.0
|
CD1
|
B:ILE267
|
4.5
|
16.7
|
1.0
|
CA
|
B:GLY265
|
4.5
|
15.9
|
1.0
|
CG2
|
B:ILE267
|
4.5
|
13.7
|
1.0
|
NE
|
B:ARG268
|
4.6
|
23.8
|
1.0
|
SG
|
B:CYS22
|
4.8
|
23.1
|
1.0
|
O
|
B:CYS263
|
4.8
|
15.3
|
1.0
|
SG
|
B:CYS19
|
4.9
|
21.0
|
1.0
|
C
|
B:VAL264
|
5.0
|
17.0
|
1.0
|
|
Iron binding site 6 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 6 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1802
b:24.6
occ:1.00
|
FE2
|
B:SF41802
|
0.0
|
24.6
|
1.0
|
S1
|
B:SF41802
|
2.2
|
22.0
|
1.0
|
SG
|
B:CYS22
|
2.3
|
23.1
|
1.0
|
S3
|
B:SF41802
|
2.3
|
25.2
|
1.0
|
S4
|
B:SF41802
|
2.3
|
21.8
|
1.0
|
FE1
|
B:SF41802
|
2.7
|
24.1
|
1.0
|
FE3
|
B:SF41802
|
2.8
|
23.0
|
1.0
|
FE4
|
B:SF41802
|
2.9
|
22.6
|
1.0
|
CB
|
B:CYS22
|
3.3
|
19.4
|
1.0
|
S2
|
B:SF41802
|
3.9
|
23.3
|
1.0
|
NH2
|
B:ARG268
|
3.9
|
19.2
|
1.0
|
N
|
B:CYS22
|
4.1
|
16.4
|
1.0
|
N
|
B:HIS20
|
4.3
|
19.5
|
1.0
|
CG2
|
B:VAL44
|
4.4
|
13.9
|
1.0
|
CA
|
B:CYS22
|
4.4
|
19.6
|
1.0
|
N
|
B:THR21
|
4.5
|
13.9
|
1.0
|
CA
|
B:HIS20
|
4.6
|
18.9
|
1.0
|
SG
|
B:CYS19
|
4.6
|
21.0
|
1.0
|
CB
|
B:PRO181
|
4.7
|
16.7
|
1.0
|
CZ
|
B:ARG268
|
4.8
|
23.6
|
1.0
|
C
|
B:HIS20
|
4.8
|
18.0
|
1.0
|
SG
|
B:CYS263
|
4.8
|
18.7
|
1.0
|
NE
|
B:ARG268
|
4.8
|
23.8
|
1.0
|
SG
|
B:CYS16
|
5.0
|
20.9
|
1.0
|
|
Iron binding site 7 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 7 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1802
b:23.0
occ:1.00
|
FE3
|
B:SF41802
|
0.0
|
23.0
|
1.0
|
S4
|
B:SF41802
|
2.3
|
21.8
|
1.0
|
SG
|
B:CYS19
|
2.3
|
21.0
|
1.0
|
S1
|
B:SF41802
|
2.3
|
22.0
|
1.0
|
S2
|
B:SF41802
|
2.4
|
23.3
|
1.0
|
FE2
|
B:SF41802
|
2.8
|
24.6
|
1.0
|
FE1
|
B:SF41802
|
2.8
|
24.1
|
1.0
|
FE4
|
B:SF41802
|
2.9
|
22.6
|
1.0
|
N
|
B:CYS19
|
3.6
|
19.8
|
1.0
|
CB
|
B:CYS19
|
3.7
|
18.9
|
1.0
|
N
|
B:HIS20
|
3.9
|
19.5
|
1.0
|
S3
|
B:SF41802
|
3.9
|
25.2
|
1.0
|
CA
|
B:CYS19
|
4.0
|
19.4
|
1.0
|
CG1
|
B:ILE17
|
4.0
|
24.6
|
1.0
|
C
|
B:CYS19
|
4.3
|
18.8
|
1.0
|
N
|
B:THR21
|
4.4
|
13.9
|
1.0
|
N
|
B:GLY18
|
4.6
|
22.7
|
1.0
|
N
|
B:GLY265
|
4.6
|
16.5
|
1.0
|
CD1
|
B:ILE17
|
4.6
|
27.8
|
1.0
|
C
|
B:GLY18
|
4.7
|
21.6
|
1.0
|
N
|
B:VAL264
|
4.7
|
18.0
|
1.0
|
SG
|
B:CYS22
|
4.7
|
23.1
|
1.0
|
SG
|
B:CYS16
|
4.8
|
20.9
|
1.0
|
CB
|
B:VAL264
|
4.8
|
18.2
|
1.0
|
N
|
B:ILE17
|
4.9
|
19.5
|
1.0
|
CA
|
B:HIS20
|
4.9
|
18.9
|
1.0
|
SG
|
B:CYS263
|
4.9
|
18.7
|
1.0
|
CA
|
B:GLY18
|
5.0
|
20.5
|
1.0
|
|
Iron binding site 8 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 8 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1802
b:22.6
occ:1.00
|
FE4
|
B:SF41802
|
0.0
|
22.6
|
1.0
|
S2
|
B:SF41802
|
2.3
|
23.3
|
1.0
|
S3
|
B:SF41802
|
2.3
|
25.2
|
1.0
|
S1
|
B:SF41802
|
2.3
|
22.0
|
1.0
|
SG
|
B:CYS16
|
2.4
|
20.9
|
1.0
|
FE1
|
B:SF41802
|
2.8
|
24.1
|
1.0
|
FE3
|
B:SF41802
|
2.9
|
23.0
|
1.0
|
FE2
|
B:SF41802
|
2.9
|
24.6
|
1.0
|
CB
|
B:CYS16
|
3.6
|
16.5
|
1.0
|
CA
|
B:CYS16
|
3.9
|
17.3
|
1.0
|
CD1
|
B:ILE267
|
4.0
|
16.7
|
1.0
|
S4
|
B:SF41802
|
4.0
|
21.8
|
1.0
|
N
|
B:ILE17
|
4.1
|
19.5
|
1.0
|
N
|
B:GLY18
|
4.2
|
22.7
|
1.0
|
C
|
B:CYS16
|
4.4
|
17.1
|
1.0
|
CG
|
B:PRO181
|
4.5
|
20.6
|
1.0
|
CA
|
B:GLY18
|
4.7
|
20.5
|
1.0
|
CB
|
B:PRO181
|
4.7
|
16.7
|
1.0
|
N
|
B:CYS19
|
4.8
|
19.8
|
1.0
|
CG1
|
B:ILE267
|
4.8
|
13.9
|
1.0
|
SG
|
B:CYS263
|
4.8
|
18.7
|
1.0
|
CG2
|
B:ILE267
|
5.0
|
13.7
|
1.0
|
SG
|
B:CYS22
|
5.0
|
23.1
|
1.0
|
|
Iron binding site 9 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 9 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1803
b:23.5
occ:1.00
|
FE1
|
B:F3S1803
|
0.0
|
23.5
|
1.0
|
S4
|
B:F3S1803
|
2.3
|
19.6
|
1.0
|
S3
|
B:F3S1803
|
2.3
|
21.3
|
1.0
|
S2
|
B:F3S1803
|
2.3
|
21.5
|
1.0
|
SG
|
B:CYS247
|
2.4
|
21.2
|
1.0
|
FE4
|
B:F3S1803
|
2.6
|
22.8
|
1.0
|
FE3
|
B:F3S1803
|
2.7
|
22.8
|
1.0
|
N
|
B:CYS247
|
3.4
|
15.3
|
1.0
|
CB
|
B:CYS247
|
3.5
|
18.7
|
1.0
|
S1
|
B:F3S1803
|
3.8
|
21.5
|
1.0
|
NE1
|
B:TRP30
|
3.8
|
16.2
|
1.0
|
CA
|
B:CYS247
|
3.9
|
15.5
|
1.0
|
C
|
B:PHE246
|
4.1
|
16.9
|
1.0
|
CB
|
B:THR257
|
4.2
|
17.9
|
1.0
|
CA
|
B:PHE246
|
4.3
|
16.8
|
1.0
|
CD1
|
B:TRP30
|
4.3
|
17.0
|
1.0
|
N
|
B:PHE246
|
4.5
|
14.1
|
1.0
|
CD1
|
B:ILE245
|
4.5
|
31.3
|
1.0
|
SG
|
B:CYS259
|
4.5
|
24.0
|
1.0
|
N
|
B:VAL258
|
4.6
|
19.7
|
1.0
|
OG1
|
B:THR257
|
4.7
|
23.6
|
1.0
|
CG2
|
B:THR257
|
4.8
|
15.2
|
1.0
|
CE2
|
B:TRP30
|
4.8
|
16.3
|
1.0
|
SG
|
B:CYS244
|
4.9
|
18.9
|
1.0
|
N
|
B:CYS259
|
4.9
|
20.9
|
1.0
|
|
Iron binding site 10 out
of 20 in 1y4z
Go back to
Iron Binding Sites List in 1y4z
Iron binding site 10 out
of 20 in the The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The Crystal Structure of Nitrate Reductase A, Narghi, in Complex with the Q-Site Inhibitor Pentachlorophenol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1803
b:22.8
occ:1.00
|
FE3
|
B:F3S1803
|
0.0
|
22.8
|
1.0
|
S1
|
B:F3S1803
|
2.2
|
21.5
|
1.0
|
S2
|
B:F3S1803
|
2.3
|
21.5
|
1.0
|
SG
|
B:CYS244
|
2.3
|
18.9
|
1.0
|
S4
|
B:F3S1803
|
2.3
|
19.6
|
1.0
|
FE4
|
B:F3S1803
|
2.7
|
22.8
|
1.0
|
FE1
|
B:F3S1803
|
2.7
|
23.5
|
1.0
|
CB
|
B:CYS244
|
3.2
|
16.1
|
1.0
|
N
|
B:PHE246
|
3.7
|
14.1
|
1.0
|
CA
|
B:CYS244
|
3.7
|
17.3
|
1.0
|
S3
|
B:F3S1803
|
3.9
|
21.3
|
1.0
|
CA
|
B:PHE246
|
4.0
|
16.8
|
1.0
|
N
|
B:ILE245
|
4.0
|
15.9
|
1.0
|
C
|
B:CYS244
|
4.2
|
13.9
|
1.0
|
CD1
|
B:LEU183
|
4.5
|
21.3
|
1.0
|
N
|
B:CYS247
|
4.5
|
15.3
|
1.0
|
CB
|
B:PHE41
|
4.7
|
15.6
|
1.0
|
C
|
B:PHE246
|
4.7
|
16.9
|
1.0
|
SG
|
B:CYS259
|
4.7
|
24.0
|
1.0
|
C
|
B:ILE245
|
4.8
|
16.8
|
1.0
|
CB
|
B:LEU183
|
4.8
|
21.2
|
1.0
|
CD1
|
B:ILE245
|
4.9
|
31.3
|
1.0
|
|
Reference:
M.G.Bertero,
R.A.Rothery,
N.Boroumand,
M.Palak,
F.Blasco,
N.Ginet,
J.H.Weiner,
N.C.J.Strynadka.
Structural and Biochemical Characterization of A Quinol Binding Site of Escherichia Coli Nitrate Reductase A J.Biol.Chem. V. 280 14836 2005.
ISSN: ISSN 0021-9258
PubMed: 15615728
DOI: 10.1074/JBC.M410457200
Page generated: Sat Aug 3 17:18:52 2024
|