Iron in PDB 1y67: Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans

All present enzymatic activity of Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans:
1.15.1.1;

The structure of Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans, PDB code: 1y67 was solved by S.Chan, S.Tanaka, M.R.Sawaya, L.J.Perry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	119.52 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.801, 87.922, 116.198, 90.00, 91.14, 90.00
R / Rfree (%)	18.4 / 20.5

The binding sites of Iron atom in the Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans (pdb code 1y67). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans, PDB code: 1y67:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe229 b:18.9 occ:0.70 OD2 A:ASP173 1.9 27.3 1.0 NE2 A:HIS27 2.1 23.8 1.0 NE2 A:HIS81 2.2 27.5 1.0 NE2 A:HIS177 2.2 26.8 1.0 O A:HOH233 2.3 19.7 1.0 CG A:ASP173 3.1 26.5 1.0 CD2 A:HIS27 3.1 26.2 1.0 CE1 A:HIS27 3.1 25.4 1.0 CE1 A:HIS81 3.1 28.1 1.0 CD2 A:HIS177 3.1 26.3 1.0 CE1 A:HIS177 3.2 26.8 1.0 CD2 A:HIS81 3.2 27.1 1.0 OD1 A:ASP173 3.5 24.8 1.0 ND1 A:HIS27 4.2 25.1 1.0 CG A:HIS27 4.2 24.1 1.0 ND1 A:HIS81 4.3 27.0 1.0 CB A:ASP173 4.3 25.0 1.0 CG A:HIS177 4.3 25.1 1.0 ND1 A:HIS177 4.3 27.6 1.0 CG A:HIS81 4.3 26.2 1.0 CZ2 A:TRP134 4.5 25.5 1.0 NE2 A:GLN152 4.6 27.9 1.0 CB A:TRP175 4.7 24.3 1.0 CG A:TRP175 4.8 23.7 1.0 CB A:ALA178 4.8 23.3 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe229 b:20.1 occ:0.70 OD2 B:ASP173 2.0 29.1 1.0 NE2 B:HIS177 2.2 28.2 1.0 NE2 B:HIS27 2.2 27.2 1.0 O B:HOH230 2.2 20.3 1.0 NE2 B:HIS81 2.2 33.2 1.0 CD2 B:HIS177 3.1 29.2 1.0 CG B:ASP173 3.1 27.6 1.0 CE1 B:HIS81 3.1 32.2 1.0 CD2 B:HIS27 3.1 28.7 1.0 CE1 B:HIS27 3.2 28.3 1.0 CE1 B:HIS177 3.2 28.9 1.0 CD2 B:HIS81 3.3 31.0 1.0 OD1 B:ASP173 3.5 26.9 1.0 ND1 B:HIS27 4.2 26.7 1.0 CG B:HIS177 4.2 27.6 1.0 ND1 B:HIS81 4.3 32.1 1.0 CG B:HIS27 4.3 27.1 1.0 ND1 B:HIS177 4.3 29.6 1.0 CB B:ASP173 4.3 28.4 1.0 CG B:HIS81 4.4 29.8 1.0 CZ2 B:TRP134 4.5 28.3 1.0 NE2 B:GLN152 4.6 29.1 1.0 CB B:TRP175 4.6 27.1 1.0 CG B:TRP175 4.8 26.6 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe229 b:20.6 occ:0.70 OD2 C:ASP173 2.0 30.6 1.0 NE2 C:HIS177 2.1 29.2 1.0 O C:HOH230 2.1 18.3 1.0 NE2 C:HIS27 2.2 27.9 1.0 NE2 C:HIS81 2.2 32.0 1.0 CE1 C:HIS27 3.1 29.7 1.0 CD2 C:HIS177 3.1 29.9 1.0 CG C:ASP173 3.1 28.8 1.0 CE1 C:HIS177 3.1 28.4 1.0 CE1 C:HIS81 3.1 30.4 1.0 CD2 C:HIS27 3.2 29.6 1.0 CD2 C:HIS81 3.2 31.8 1.0 OD1 C:ASP173 3.6 28.3 1.0 ND1 C:HIS27 4.2 29.3 1.0 ND1 C:HIS177 4.2 28.5 1.0 CG C:HIS177 4.2 28.1 1.0 ND1 C:HIS81 4.3 31.1 1.0 CG C:HIS27 4.3 28.7 1.0 CB C:ASP173 4.3 28.0 1.0 CG C:HIS81 4.3 29.3 1.0 CZ2 C:TRP134 4.5 29.5 1.0 CB C:TRP175 4.6 26.5 1.0 NE2 C:GLN152 4.6 29.1 1.0 CG C:TRP175 4.8 26.2 1.0 CB C:ALA178 4.9 26.5 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe229 b:23.4 occ:0.70 O D:HOH234 2.0 23.8 1.0 OD2 D:ASP173 2.0 31.1 1.0 NE2 D:HIS177 2.2 28.9 1.0 NE2 D:HIS81 2.2 33.8 1.0 NE2 D:HIS27 2.2 29.4 1.0 CE1 D:HIS81 3.0 34.3 1.0 CG D:ASP173 3.1 29.9 1.0 CD2 D:HIS177 3.1 29.8 1.0 CE1 D:HIS27 3.1 29.9 1.0 CE1 D:HIS177 3.2 30.3 1.0 CD2 D:HIS27 3.2 29.5 1.0 CD2 D:HIS81 3.3 33.9 1.0 OD1 D:ASP173 3.5 29.7 1.0 ND1 D:HIS81 4.2 33.7 1.0 ND1 D:HIS27 4.3 28.4 1.0 ND1 D:HIS177 4.3 29.9 1.0 CG D:HIS177 4.3 29.1 1.0 CG D:HIS27 4.3 29.1 1.0 CB D:ASP173 4.3 28.1 1.0 CG D:HIS81 4.4 31.9 1.0 CZ2 D:TRP134 4.4 29.0 1.0 CB D:TRP175 4.5 27.4 1.0 NE2 D:GLN152 4.6 28.2 1.0 CG D:TRP175 4.7 27.1 1.0 CD1 D:TRP175 4.9 27.7 1.0 CB D:ALA178 5.0 27.7 1.0

S.Chan, S.Tanaka, M.R.Sawaya, L.J.Perry. Crystal Structure of Manganese Superoxide Dismutase From Deinococcus Radiodurans To Be Published.