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Iron in PDB 1ycc: High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C

Protein crystallography data

The structure of High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C, PDB code: 1ycc was solved by G.V.Louie, G.D.Brayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.23
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 36.460, 36.460, 136.860, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C (pdb code 1ycc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C, PDB code: 1ycc:

Iron binding site 1 out of 1 in 1ycc

Go back to Iron Binding Sites List in 1ycc
Iron binding site 1 out of 1 in the High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe118

b:5.9
occ:1.00
FE A:HEM118 0.0 5.9 1.0
NA A:HEM118 2.0 4.2 1.0
NE2 A:HIS18 2.0 3.8 1.0
NC A:HEM118 2.0 3.4 1.0
NB A:HEM118 2.0 2.1 1.0
ND A:HEM118 2.0 5.5 1.0
SD A:MET80 2.4 5.6 1.0
CE1 A:HIS18 3.0 2.0 1.0
C4B A:HEM118 3.0 3.2 1.0
C4D A:HEM118 3.0 5.9 1.0
C1B A:HEM118 3.0 3.2 1.0
CD2 A:HIS18 3.0 2.0 1.0
C1A A:HEM118 3.0 6.0 1.0
C1C A:HEM118 3.0 2.8 1.0
C1D A:HEM118 3.0 4.2 1.0
C4C A:HEM118 3.1 4.1 1.0
C4A A:HEM118 3.1 6.0 1.0
CHD A:HEM118 3.3 3.7 1.0
CE A:MET80 3.3 4.0 1.0
CHC A:HEM118 3.3 3.4 1.0
CHB A:HEM118 3.4 4.2 1.0
CHA A:HEM118 3.4 5.9 1.0
CG A:MET80 3.5 5.0 1.0
ND1 A:HIS18 4.1 3.0 1.0
CG A:HIS18 4.2 3.6 1.0
C2D A:HEM118 4.2 4.1 1.0
C2B A:HEM118 4.2 3.6 1.0
C3D A:HEM118 4.2 5.1 1.0
C3A A:HEM118 4.3 3.9 1.0
CB A:MET80 4.3 6.1 1.0
C3B A:HEM118 4.3 2.6 1.0
C3C A:HEM118 4.3 3.1 1.0
C2A A:HEM118 4.3 6.5 1.0
C2C A:HEM118 4.3 3.4 1.0
OH A:TYR67 4.9 13.0 1.0

Reference:

G.V.Louie, G.D.Brayer. High-Resolution Refinement of Yeast Iso-1-Cytochrome C and Comparisons with Other Eukaryotic Cytochromes C. J.Mol.Biol. V. 214 527 1990.
ISSN: ISSN 0022-2836
PubMed: 2166169
DOI: 10.1016/0022-2836(90)90197-T
Page generated: Sun Dec 13 14:37:09 2020

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