Iron in PDB 1ye9: Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
Enzymatic activity of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
All present enzymatic activity of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli:
1.11.1.6;
Protein crystallography data
The structure of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli, PDB code: 1ye9
was solved by
P.C.Loewen,
P.Chelikani,
X.Carpena,
I.Fita,
R.Perez-Luque,
L.J.Donald,
J.Switala,
H.W.Duckworth,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
2.80
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.011,
152.888,
135.287,
90.00,
97.54,
90.00
|
|
R / Rfree (%)
|
21.7 /
26.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
(pdb code 1ye9). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli, PDB code: 1ye9:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 1 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe760
b:24.1
occ:1.00
|
FE
|
E:HDD760
|
0.0
|
24.1
|
1.0
|
|
ND
|
E:HDD760
|
1.9
|
26.1
|
1.0
|
|
OH
|
E:TYR415
|
1.9
|
23.9
|
1.0
|
|
NC
|
E:HDD760
|
2.1
|
20.4
|
1.0
|
|
NB
|
E:HDD760
|
2.1
|
24.7
|
1.0
|
|
NA
|
E:HDD760
|
2.1
|
15.8
|
1.0
|
|
C1D
|
E:HDD760
|
2.8
|
23.3
|
1.0
|
|
CHD
|
E:HDD760
|
2.9
|
25.7
|
1.0
|
|
C4D
|
E:HDD760
|
2.9
|
28.1
|
1.0
|
|
CHA
|
E:HDD760
|
2.9
|
23.6
|
1.0
|
|
CZ
|
E:TYR415
|
3.0
|
31.9
|
1.0
|
|
C4C
|
E:HDD760
|
3.0
|
24.2
|
1.0
|
|
C1A
|
E:HDD760
|
3.0
|
14.6
|
1.0
|
|
C4B
|
E:HDD760
|
3.0
|
34.1
|
1.0
|
|
CHC
|
E:HDD760
|
3.1
|
29.9
|
1.0
|
|
C1C
|
E:HDD760
|
3.1
|
28.0
|
1.0
|
|
C1B
|
E:HDD760
|
3.1
|
23.6
|
1.0
|
|
C4A
|
E:HDD760
|
3.1
|
21.0
|
1.0
|
|
CHB
|
E:HDD760
|
3.5
|
23.1
|
1.0
|
|
CE1
|
E:TYR415
|
3.6
|
31.5
|
1.0
|
|
CE2
|
E:TYR415
|
3.9
|
35.6
|
1.0
|
|
NE
|
E:ARG411
|
4.1
|
31.3
|
1.0
|
|
C2D
|
E:HDD760
|
4.1
|
21.8
|
1.0
|
|
C3C
|
E:HDD760
|
4.2
|
24.4
|
1.0
|
|
C3D
|
E:HDD760
|
4.3
|
25.2
|
1.0
|
|
C3B
|
E:HDD760
|
4.3
|
38.3
|
1.0
|
|
NH2
|
E:ARG411
|
4.3
|
37.4
|
1.0
|
|
C2A
|
E:HDD760
|
4.3
|
19.2
|
1.0
|
|
C2B
|
E:HDD760
|
4.3
|
34.4
|
1.0
|
|
C2C
|
E:HDD760
|
4.4
|
28.1
|
1.0
|
|
NE2
|
A:HIS128
|
4.4
|
38.1
|
1.0
|
|
C3A
|
E:HDD760
|
4.4
|
10.8
|
1.0
|
|
CD2
|
A:HIS128
|
4.5
|
38.1
|
1.0
|
|
CG2
|
A:VAL127
|
4.6
|
33.6
|
1.0
|
|
CZ
|
E:ARG411
|
4.7
|
33.7
|
1.0
|
|
O
|
A:HOH320
|
4.7
|
37.9
|
1.0
|
|
CZ
|
A:PHE214
|
4.8
|
39.8
|
1.0
|
|
O1D
|
E:HDD760
|
4.9
|
29.7
|
1.0
|
|
CD1
|
E:TYR415
|
4.9
|
30.7
|
1.0
|
|
CMD
|
E:HDD760
|
4.9
|
12.7
|
1.0
|
|
OND
|
E:HDD760
|
5.0
|
20.7
|
1.0
|
|
Iron binding site 2 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 2 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe760
b:24.9
occ:1.00
|
FE
|
F:HDD760
|
0.0
|
24.9
|
1.0
|
|
ND
|
F:HDD760
|
1.9
|
20.7
|
1.0
|
|
NB
|
F:HDD760
|
2.1
|
22.1
|
1.0
|
|
NC
|
F:HDD760
|
2.1
|
22.5
|
1.0
|
|
NA
|
F:HDD760
|
2.1
|
14.7
|
1.0
|
|
OH
|
F:TYR415
|
2.2
|
22.4
|
1.0
|
|
C4D
|
F:HDD760
|
2.9
|
30.7
|
1.0
|
|
C1D
|
F:HDD760
|
2.9
|
22.9
|
1.0
|
|
CZ
|
F:TYR415
|
3.0
|
30.5
|
1.0
|
|
CHA
|
F:HDD760
|
3.0
|
25.1
|
1.0
|
|
C4B
|
F:HDD760
|
3.0
|
31.5
|
1.0
|
|
CHC
|
F:HDD760
|
3.0
|
31.5
|
1.0
|
|
CHD
|
F:HDD760
|
3.0
|
23.4
|
1.0
|
|
C1A
|
F:HDD760
|
3.1
|
26.6
|
1.0
|
|
C1B
|
F:HDD760
|
3.1
|
27.4
|
1.0
|
|
C1C
|
F:HDD760
|
3.1
|
30.3
|
1.0
|
|
C4C
|
F:HDD760
|
3.1
|
27.4
|
1.0
|
|
C4A
|
F:HDD760
|
3.1
|
12.3
|
1.0
|
|
CE1
|
F:TYR415
|
3.5
|
31.5
|
1.0
|
|
CHB
|
F:HDD760
|
3.6
|
14.9
|
1.0
|
|
CE2
|
F:TYR415
|
3.9
|
34.9
|
1.0
|
|
NE
|
F:ARG411
|
4.1
|
31.7
|
1.0
|
|
NH2
|
F:ARG411
|
4.2
|
36.0
|
1.0
|
|
C3B
|
F:HDD760
|
4.2
|
31.0
|
1.0
|
|
C2B
|
F:HDD760
|
4.3
|
27.3
|
1.0
|
|
C2D
|
F:HDD760
|
4.3
|
27.0
|
1.0
|
|
C3D
|
F:HDD760
|
4.3
|
32.7
|
1.0
|
|
C3C
|
F:HDD760
|
4.3
|
19.6
|
1.0
|
|
C2C
|
F:HDD760
|
4.3
|
20.2
|
1.0
|
|
C2A
|
F:HDD760
|
4.4
|
18.0
|
1.0
|
|
C3A
|
F:HDD760
|
4.4
|
14.7
|
1.0
|
|
CG2
|
B:VAL127
|
4.4
|
32.5
|
1.0
|
|
CD2
|
B:HIS128
|
4.5
|
38.4
|
1.0
|
|
NE2
|
B:HIS128
|
4.5
|
37.7
|
1.0
|
|
CZ
|
B:PHE214
|
4.6
|
38.9
|
1.0
|
|
CZ
|
F:ARG411
|
4.6
|
33.7
|
1.0
|
|
CD1
|
F:TYR415
|
4.7
|
30.5
|
1.0
|
|
CE1
|
B:PHE214
|
4.8
|
38.1
|
1.0
|
|
Iron binding site 3 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 3 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe760
b:32.2
occ:1.00
|
FE
|
G:HDD760
|
0.0
|
32.2
|
1.0
|
|
ND
|
G:HDD760
|
1.9
|
38.0
|
1.0
|
|
OH
|
G:TYR415
|
2.0
|
22.5
|
1.0
|
|
NB
|
G:HDD760
|
2.1
|
34.6
|
1.0
|
|
NC
|
G:HDD760
|
2.1
|
35.3
|
1.0
|
|
NA
|
G:HDD760
|
2.1
|
35.8
|
1.0
|
|
C4D
|
G:HDD760
|
2.9
|
37.2
|
1.0
|
|
C1D
|
G:HDD760
|
3.0
|
34.1
|
1.0
|
|
CHA
|
G:HDD760
|
3.0
|
35.9
|
1.0
|
|
CZ
|
G:TYR415
|
3.0
|
30.0
|
1.0
|
|
C4B
|
G:HDD760
|
3.0
|
41.6
|
1.0
|
|
C1A
|
G:HDD760
|
3.0
|
33.5
|
1.0
|
|
C4C
|
G:HDD760
|
3.1
|
29.9
|
1.0
|
|
CHC
|
G:HDD760
|
3.1
|
37.4
|
1.0
|
|
C1C
|
G:HDD760
|
3.1
|
35.6
|
1.0
|
|
CHD
|
G:HDD760
|
3.1
|
27.0
|
1.0
|
|
C1B
|
G:HDD760
|
3.1
|
37.4
|
1.0
|
|
C4A
|
G:HDD760
|
3.1
|
32.8
|
1.0
|
|
CHB
|
G:HDD760
|
3.5
|
33.8
|
1.0
|
|
CE1
|
G:TYR415
|
3.6
|
31.0
|
1.0
|
|
NE
|
G:ARG411
|
4.0
|
31.4
|
1.0
|
|
CE2
|
G:TYR415
|
4.0
|
35.6
|
1.0
|
|
C3C
|
G:HDD760
|
4.2
|
30.2
|
1.0
|
|
C2D
|
G:HDD760
|
4.3
|
37.1
|
1.0
|
|
C3B
|
G:HDD760
|
4.3
|
43.5
|
1.0
|
|
C3D
|
G:HDD760
|
4.3
|
40.0
|
1.0
|
|
C2B
|
G:HDD760
|
4.3
|
42.7
|
1.0
|
|
C2C
|
G:HDD760
|
4.3
|
32.7
|
1.0
|
|
C2A
|
G:HDD760
|
4.3
|
29.9
|
1.0
|
|
C3A
|
G:HDD760
|
4.4
|
32.6
|
1.0
|
|
CZ
|
C:PHE214
|
4.4
|
40.4
|
1.0
|
|
NH2
|
G:ARG411
|
4.5
|
36.5
|
1.0
|
|
CZ
|
G:ARG411
|
4.7
|
34.2
|
1.0
|
|
NE2
|
C:HIS128
|
4.7
|
37.6
|
1.0
|
|
CD2
|
C:HIS128
|
4.8
|
39.0
|
1.0
|
|
CG2
|
C:VAL127
|
4.8
|
32.4
|
1.0
|
|
CD
|
G:ARG411
|
4.8
|
28.6
|
1.0
|
|
CG
|
G:ARG411
|
4.8
|
30.8
|
1.0
|
|
OND
|
G:HDD760
|
4.9
|
40.7
|
1.0
|
|
CE1
|
C:PHE214
|
4.9
|
39.0
|
1.0
|
|
CD1
|
G:TYR415
|
4.9
|
30.8
|
1.0
|
|
Iron binding site 4 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 4 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe760
b:35.9
occ:1.00
|
FE
|
H:HDD760
|
0.0
|
35.9
|
1.0
|
|
OH
|
H:TYR415
|
1.7
|
21.3
|
1.0
|
|
ND
|
H:HDD760
|
1.9
|
38.4
|
1.0
|
|
NC
|
H:HDD760
|
2.1
|
44.8
|
1.0
|
|
NB
|
H:HDD760
|
2.1
|
45.3
|
1.0
|
|
NA
|
H:HDD760
|
2.1
|
40.9
|
1.0
|
|
CZ
|
H:TYR415
|
2.8
|
31.0
|
1.0
|
|
C4D
|
H:HDD760
|
2.9
|
40.6
|
1.0
|
|
C1D
|
H:HDD760
|
2.9
|
39.9
|
1.0
|
|
CHA
|
H:HDD760
|
2.9
|
44.4
|
1.0
|
|
C1A
|
H:HDD760
|
3.0
|
43.8
|
1.0
|
|
C1C
|
H:HDD760
|
3.0
|
44.4
|
1.0
|
|
C4B
|
H:HDD760
|
3.0
|
47.9
|
1.0
|
|
CHC
|
H:HDD760
|
3.0
|
48.8
|
1.0
|
|
C4C
|
H:HDD760
|
3.1
|
44.0
|
1.0
|
|
CHD
|
H:HDD760
|
3.1
|
41.1
|
1.0
|
|
C1B
|
H:HDD760
|
3.2
|
47.8
|
1.0
|
|
C4A
|
H:HDD760
|
3.2
|
35.1
|
1.0
|
|
CE1
|
H:TYR415
|
3.4
|
31.8
|
1.0
|
|
CHB
|
H:HDD760
|
3.6
|
38.7
|
1.0
|
|
CE2
|
H:TYR415
|
3.8
|
35.1
|
1.0
|
|
NE
|
H:ARG411
|
4.1
|
32.2
|
1.0
|
|
NH2
|
H:ARG411
|
4.2
|
36.5
|
1.0
|
|
C3C
|
H:HDD760
|
4.2
|
41.4
|
1.0
|
|
C2D
|
H:HDD760
|
4.3
|
41.2
|
1.0
|
|
C2C
|
H:HDD760
|
4.3
|
43.9
|
1.0
|
|
C3D
|
H:HDD760
|
4.3
|
38.0
|
1.0
|
|
C3B
|
H:HDD760
|
4.3
|
47.8
|
1.0
|
|
C2A
|
H:HDD760
|
4.3
|
43.0
|
1.0
|
|
C2B
|
H:HDD760
|
4.4
|
49.8
|
1.0
|
|
C3A
|
H:HDD760
|
4.5
|
45.0
|
1.0
|
|
NE2
|
D:HIS128
|
4.5
|
36.8
|
1.0
|
|
CD2
|
D:HIS128
|
4.5
|
38.6
|
1.0
|
|
CG2
|
D:VAL127
|
4.5
|
33.0
|
1.0
|
|
CZ
|
H:ARG411
|
4.6
|
33.8
|
1.0
|
|
CZ
|
D:PHE214
|
4.6
|
38.8
|
1.0
|
|
CD1
|
H:TYR415
|
4.7
|
30.8
|
1.0
|
|
CE1
|
D:PHE214
|
4.9
|
38.6
|
1.0
|
|
Iron binding site 5 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 5 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe760
b:44.2
occ:1.00
|
FE
|
M:HDD760
|
0.0
|
44.2
|
1.0
|
|
OH
|
M:TYR415
|
1.7
|
23.8
|
1.0
|
|
ND
|
M:HDD760
|
1.9
|
51.0
|
1.0
|
|
NA
|
M:HDD760
|
2.1
|
50.1
|
1.0
|
|
NC
|
M:HDD760
|
2.1
|
50.5
|
1.0
|
|
NB
|
M:HDD760
|
2.1
|
59.6
|
1.0
|
|
CZ
|
M:TYR415
|
2.9
|
31.6
|
1.0
|
|
C4D
|
M:HDD760
|
2.9
|
50.4
|
1.0
|
|
C1D
|
M:HDD760
|
2.9
|
49.3
|
1.0
|
|
CHA
|
M:HDD760
|
2.9
|
49.8
|
1.0
|
|
C1A
|
M:HDD760
|
3.0
|
49.0
|
1.0
|
|
CHD
|
M:HDD760
|
3.0
|
46.5
|
1.0
|
|
C4C
|
M:HDD760
|
3.0
|
53.5
|
1.0
|
|
C1C
|
M:HDD760
|
3.1
|
56.4
|
1.0
|
|
C4B
|
M:HDD760
|
3.1
|
61.7
|
1.0
|
|
CHC
|
M:HDD760
|
3.1
|
58.6
|
1.0
|
|
C4A
|
M:HDD760
|
3.1
|
48.5
|
1.0
|
|
C1B
|
M:HDD760
|
3.2
|
62.3
|
1.0
|
|
CE1
|
M:TYR415
|
3.5
|
32.2
|
1.0
|
|
CHB
|
M:HDD760
|
3.5
|
56.8
|
1.0
|
|
CE2
|
M:TYR415
|
3.9
|
35.4
|
1.0
|
|
C3D
|
M:HDD760
|
4.3
|
53.0
|
1.0
|
|
C2D
|
M:HDD760
|
4.3
|
51.0
|
1.0
|
|
NE
|
M:ARG411
|
4.3
|
32.1
|
1.0
|
|
C3C
|
M:HDD760
|
4.3
|
59.7
|
1.0
|
|
C2A
|
M:HDD760
|
4.3
|
40.0
|
1.0
|
|
C2C
|
M:HDD760
|
4.3
|
57.5
|
1.0
|
|
C3B
|
M:HDD760
|
4.4
|
64.0
|
1.0
|
|
C3A
|
M:HDD760
|
4.4
|
40.7
|
1.0
|
|
C2B
|
M:HDD760
|
4.4
|
66.5
|
1.0
|
|
NE2
|
I:HIS128
|
4.4
|
37.3
|
1.0
|
|
CD2
|
I:HIS128
|
4.4
|
39.1
|
1.0
|
|
CG2
|
I:VAL127
|
4.5
|
33.4
|
1.0
|
|
CZ
|
I:PHE214
|
4.6
|
39.9
|
1.0
|
|
NH2
|
M:ARG411
|
4.8
|
37.5
|
1.0
|
|
CZ
|
M:ARG411
|
4.8
|
35.3
|
1.0
|
|
CD1
|
M:TYR415
|
4.8
|
31.4
|
1.0
|
|
CE1
|
I:PHE214
|
4.9
|
38.8
|
1.0
|
|
CD
|
M:ARG411
|
4.9
|
29.1
|
1.0
|
|
Iron binding site 6 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 6 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe760
b:38.8
occ:1.00
|
FE
|
N:HDD760
|
0.0
|
38.8
|
1.0
|
|
ND
|
N:HDD760
|
1.9
|
42.8
|
1.0
|
|
OH
|
N:TYR415
|
2.0
|
23.7
|
1.0
|
|
NB
|
N:HDD760
|
2.1
|
33.6
|
1.0
|
|
NC
|
N:HDD760
|
2.1
|
37.9
|
1.0
|
|
NA
|
N:HDD760
|
2.1
|
40.7
|
1.0
|
|
C1D
|
N:HDD760
|
2.8
|
46.1
|
1.0
|
|
C4D
|
N:HDD760
|
2.9
|
42.4
|
1.0
|
|
CHD
|
N:HDD760
|
2.9
|
44.2
|
1.0
|
|
CZ
|
N:TYR415
|
3.0
|
31.2
|
1.0
|
|
CHA
|
N:HDD760
|
3.0
|
34.2
|
1.0
|
|
C4C
|
N:HDD760
|
3.0
|
38.5
|
1.0
|
|
C4B
|
N:HDD760
|
3.0
|
40.0
|
1.0
|
|
C1A
|
N:HDD760
|
3.1
|
37.1
|
1.0
|
|
C1C
|
N:HDD760
|
3.1
|
37.1
|
1.0
|
|
CHC
|
N:HDD760
|
3.1
|
36.6
|
1.0
|
|
C4A
|
N:HDD760
|
3.1
|
37.4
|
1.0
|
|
C1B
|
N:HDD760
|
3.1
|
34.5
|
1.0
|
|
CE1
|
N:TYR415
|
3.5
|
32.0
|
1.0
|
|
CHB
|
N:HDD760
|
3.5
|
39.1
|
1.0
|
|
NE
|
N:ARG411
|
3.9
|
30.6
|
1.0
|
|
CE2
|
N:TYR415
|
4.1
|
34.9
|
1.0
|
|
NH2
|
N:ARG411
|
4.1
|
37.1
|
1.0
|
|
C2D
|
N:HDD760
|
4.2
|
47.6
|
1.0
|
|
C3D
|
N:HDD760
|
4.2
|
43.2
|
1.0
|
|
C3C
|
N:HDD760
|
4.2
|
37.5
|
1.0
|
|
C3B
|
N:HDD760
|
4.3
|
40.7
|
1.0
|
|
C2C
|
N:HDD760
|
4.3
|
41.7
|
1.0
|
|
C2A
|
N:HDD760
|
4.3
|
37.1
|
1.0
|
|
C2B
|
N:HDD760
|
4.3
|
37.2
|
1.0
|
|
C3A
|
N:HDD760
|
4.4
|
32.5
|
1.0
|
|
NE2
|
J:HIS128
|
4.5
|
38.0
|
1.0
|
|
CZ
|
N:ARG411
|
4.5
|
34.7
|
1.0
|
|
CD2
|
J:HIS128
|
4.5
|
39.3
|
1.0
|
|
CG2
|
J:VAL127
|
4.7
|
34.0
|
1.0
|
|
CZ
|
J:PHE214
|
4.7
|
39.5
|
1.0
|
|
CD1
|
N:TYR415
|
4.8
|
30.5
|
1.0
|
|
O1D
|
N:HDD760
|
4.9
|
44.0
|
1.0
|
|
CD
|
N:ARG411
|
5.0
|
28.9
|
1.0
|
|
Iron binding site 7 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 7 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe760
b:53.5
occ:1.00
|
FE
|
O:HDD760
|
0.0
|
53.5
|
1.0
|
|
OH
|
O:TYR415
|
1.8
|
23.0
|
1.0
|
|
ND
|
O:HDD760
|
1.9
|
53.8
|
1.0
|
|
NC
|
O:HDD760
|
2.1
|
45.6
|
1.0
|
|
NA
|
O:HDD760
|
2.1
|
52.8
|
1.0
|
|
NB
|
O:HDD760
|
2.1
|
57.4
|
1.0
|
|
C4D
|
O:HDD760
|
2.9
|
53.8
|
1.0
|
|
CZ
|
O:TYR415
|
2.9
|
31.9
|
1.0
|
|
C1D
|
O:HDD760
|
2.9
|
55.1
|
1.0
|
|
CHA
|
O:HDD760
|
2.9
|
53.5
|
1.0
|
|
CHD
|
O:HDD760
|
3.0
|
48.9
|
1.0
|
|
C1A
|
O:HDD760
|
3.0
|
55.6
|
1.0
|
|
C4B
|
O:HDD760
|
3.0
|
52.5
|
1.0
|
|
C4C
|
O:HDD760
|
3.1
|
47.3
|
1.0
|
|
CHC
|
O:HDD760
|
3.1
|
45.9
|
1.0
|
|
C1C
|
O:HDD760
|
3.1
|
45.4
|
1.0
|
|
C1B
|
O:HDD760
|
3.2
|
60.4
|
1.0
|
|
C4A
|
O:HDD760
|
3.2
|
54.5
|
1.0
|
|
CE1
|
O:TYR415
|
3.4
|
31.8
|
1.0
|
|
CHB
|
O:HDD760
|
3.6
|
57.8
|
1.0
|
|
CE2
|
O:TYR415
|
4.0
|
35.5
|
1.0
|
|
NE
|
O:ARG411
|
4.1
|
33.1
|
1.0
|
|
NE2
|
K:HIS128
|
4.1
|
37.3
|
1.0
|
|
CD2
|
K:HIS128
|
4.2
|
39.2
|
1.0
|
|
C2D
|
O:HDD760
|
4.2
|
59.0
|
1.0
|
|
C3D
|
O:HDD760
|
4.2
|
57.6
|
1.0
|
|
NH2
|
O:ARG411
|
4.3
|
36.5
|
1.0
|
|
C3B
|
O:HDD760
|
4.3
|
57.0
|
1.0
|
|
C3C
|
O:HDD760
|
4.3
|
42.6
|
1.0
|
|
C2C
|
O:HDD760
|
4.3
|
44.4
|
1.0
|
|
C2B
|
O:HDD760
|
4.4
|
60.1
|
1.0
|
|
C2A
|
O:HDD760
|
4.4
|
51.1
|
1.0
|
|
C3A
|
O:HDD760
|
4.4
|
54.1
|
1.0
|
|
CG2
|
K:VAL127
|
4.6
|
33.2
|
1.0
|
|
CZ
|
O:ARG411
|
4.7
|
35.7
|
1.0
|
|
CZ
|
K:PHE214
|
4.7
|
39.8
|
1.0
|
|
CD1
|
O:TYR415
|
4.8
|
30.3
|
1.0
|
|
OND
|
O:HDD760
|
5.0
|
61.5
|
1.0
|
|
Iron binding site 8 out
of 8 in 1ye9
Go back to
Iron Binding Sites List in 1ye9
Iron binding site 8 out
of 8 in the Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Proteolytically Truncated Catalase Hpii From E. Coli within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe760
b:30.6
occ:1.00
|
FE
|
P:HDD760
|
0.0
|
30.6
|
1.0
|
|
ND
|
P:HDD760
|
2.0
|
19.1
|
1.0
|
|
OH
|
P:TYR415
|
2.1
|
24.1
|
1.0
|
|
NA
|
P:HDD760
|
2.1
|
17.0
|
1.0
|
|
NB
|
P:HDD760
|
2.1
|
21.7
|
1.0
|
|
NC
|
P:HDD760
|
2.1
|
24.5
|
1.0
|
|
C1D
|
P:HDD760
|
3.0
|
23.2
|
1.0
|
|
C1A
|
P:HDD760
|
3.0
|
19.1
|
1.0
|
|
CZ
|
P:TYR415
|
3.0
|
31.4
|
1.0
|
|
C4D
|
P:HDD760
|
3.0
|
24.4
|
1.0
|
|
CHD
|
P:HDD760
|
3.0
|
21.8
|
1.0
|
|
CHA
|
P:HDD760
|
3.0
|
28.3
|
1.0
|
|
C4C
|
P:HDD760
|
3.0
|
29.2
|
1.0
|
|
C4B
|
P:HDD760
|
3.1
|
33.7
|
1.0
|
|
C4A
|
P:HDD760
|
3.1
|
24.4
|
1.0
|
|
C1C
|
P:HDD760
|
3.1
|
26.5
|
1.0
|
|
CHC
|
P:HDD760
|
3.1
|
23.5
|
1.0
|
|
C1B
|
P:HDD760
|
3.1
|
28.7
|
1.0
|
|
CE1
|
P:TYR415
|
3.5
|
32.4
|
1.0
|
|
CHB
|
P:HDD760
|
3.5
|
26.9
|
1.0
|
|
CE2
|
P:TYR415
|
4.0
|
35.5
|
1.0
|
|
NE
|
P:ARG411
|
4.1
|
31.7
|
1.0
|
|
C2A
|
P:HDD760
|
4.2
|
21.0
|
1.0
|
|
C3C
|
P:HDD760
|
4.2
|
29.4
|
1.0
|
|
C3B
|
P:HDD760
|
4.3
|
31.9
|
1.0
|
|
C3A
|
P:HDD760
|
4.3
|
25.6
|
1.0
|
|
C2D
|
P:HDD760
|
4.3
|
28.6
|
1.0
|
|
C3D
|
P:HDD760
|
4.3
|
30.9
|
1.0
|
|
C2C
|
P:HDD760
|
4.4
|
32.2
|
1.0
|
|
C2B
|
P:HDD760
|
4.4
|
31.9
|
1.0
|
|
NH2
|
P:ARG411
|
4.4
|
36.6
|
1.0
|
|
CZ
|
L:PHE214
|
4.5
|
40.2
|
1.0
|
|
NE2
|
L:HIS128
|
4.6
|
37.0
|
1.0
|
|
CZ
|
P:ARG411
|
4.7
|
33.9
|
1.0
|
|
CD2
|
L:HIS128
|
4.8
|
38.4
|
1.0
|
|
CD1
|
P:TYR415
|
4.8
|
31.9
|
1.0
|
|
CG2
|
L:VAL127
|
4.8
|
33.5
|
1.0
|
|
CE1
|
L:PHE214
|
4.9
|
39.0
|
1.0
|
|
CG
|
P:ARG411
|
5.0
|
31.0
|
1.0
|
|
Reference:
P.Chelikani,
X.Carpena,
R.Perez-Luque,
L.J.Donald,
H.W.Duckworth,
J.Switala,
I.Fita,
P.C.Loewen.
Characterization of A Large Subunit Catalase Truncated By Proteolytic Cleavage(,) Biochemistry V. 44 5597 2005.
ISSN: ISSN 0006-2960
PubMed: 15823018
DOI: 10.1021/BI047277M
Page generated: Sun Dec 13 14:37:19 2020
|
