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Iron in PDB 2av0: F97L with Co Bound

Protein crystallography data

The structure of F97L with Co Bound, PDB code: 2av0 was solved by J.E.Knapp, M.A.Bonham, Q.H.Gibson, J.C.Nichols, W.E.Royer Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.43 / 1.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.250, 43.980, 83.500, 90.00, 122.03, 90.00
R / Rfree (%) 18.9 / 20.6

Iron Binding Sites:

The binding sites of Iron atom in the F97L with Co Bound (pdb code 2av0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the F97L with Co Bound, PDB code: 2av0:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2av0

Go back to Iron Binding Sites List in 2av0
Iron binding site 1 out of 2 in the F97L with Co Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of F97L with Co Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe147

b:14.1
occ:1.00
FE A:HEM147 0.0 14.1 1.0
C A:CMO148 1.9 13.8 1.0
NB A:HEM147 2.0 12.8 1.0
NC A:HEM147 2.0 13.6 1.0
ND A:HEM147 2.0 14.8 1.0
NA A:HEM147 2.0 13.5 1.0
NE2 A:HIS101 2.0 14.0 1.0
C4B A:HEM147 3.0 13.4 1.0
C1C A:HEM147 3.1 13.1 1.0
CE1 A:HIS101 3.1 13.6 1.0
C4D A:HEM147 3.1 15.9 1.0
C1B A:HEM147 3.1 13.7 1.0
CD2 A:HIS101 3.1 14.4 1.0
C1A A:HEM147 3.1 15.2 1.0
C4C A:HEM147 3.1 14.7 1.0
O A:CMO148 3.1 18.0 1.0
C4A A:HEM147 3.1 13.7 1.0
C1D A:HEM147 3.1 15.6 1.0
CHC A:HEM147 3.4 13.6 1.0
CHA A:HEM147 3.4 15.1 1.0
CHD A:HEM147 3.5 15.0 1.0
CHB A:HEM147 3.5 12.8 1.0
ND1 A:HIS101 4.2 14.4 1.0
CG A:HIS101 4.2 14.3 1.0
C2C A:HEM147 4.3 14.2 1.0
C2B A:HEM147 4.3 13.1 1.0
C3B A:HEM147 4.3 13.3 1.0
C2D A:HEM147 4.3 16.2 1.0
C3A A:HEM147 4.3 13.5 1.0
C3D A:HEM147 4.3 17.5 1.0
C2A A:HEM147 4.3 14.0 1.0
C3C A:HEM147 4.3 14.9 1.0
CE1 A:HIS69 4.8 16.5 1.0
CD1 A:LEU73 4.9 18.5 1.0
CE2 A:PHE111 4.9 15.5 1.0

Iron binding site 2 out of 2 in 2av0

Go back to Iron Binding Sites List in 2av0
Iron binding site 2 out of 2 in the F97L with Co Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of F97L with Co Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:13.6
occ:1.00
FE B:HEM147 0.0 13.6 1.0
C B:CMO148 1.9 13.9 1.0
ND B:HEM147 2.0 13.7 1.0
NA B:HEM147 2.0 13.2 1.0
NC B:HEM147 2.0 13.9 1.0
NB B:HEM147 2.0 12.4 1.0
NE2 B:HIS101 2.1 12.4 1.0
C1A B:HEM147 3.0 14.0 1.0
C4D B:HEM147 3.0 13.8 1.0
O B:CMO148 3.1 16.2 1.0
C1D B:HEM147 3.1 13.9 1.0
C4B B:HEM147 3.1 12.7 1.0
C4A B:HEM147 3.1 12.6 1.0
C1C B:HEM147 3.1 13.7 1.0
C4C B:HEM147 3.1 14.3 1.0
CE1 B:HIS101 3.1 13.2 1.0
C1B B:HEM147 3.1 12.3 1.0
CD2 B:HIS101 3.1 11.6 1.0
CHA B:HEM147 3.4 13.3 1.0
CHC B:HEM147 3.4 13.9 1.0
CHD B:HEM147 3.4 14.1 1.0
CHB B:HEM147 3.4 12.8 1.0
ND1 B:HIS101 4.2 13.6 1.0
C2A B:HEM147 4.3 14.6 1.0
C3D B:HEM147 4.3 14.3 1.0
CG B:HIS101 4.3 13.9 1.0
C2D B:HEM147 4.3 14.0 1.0
C3A B:HEM147 4.3 13.6 1.0
C2C B:HEM147 4.3 14.2 1.0
C3C B:HEM147 4.3 13.8 1.0
C3B B:HEM147 4.3 12.6 1.0
C2B B:HEM147 4.3 13.1 1.0
CE1 B:HIS69 4.8 15.0 1.0
CD1 B:LEU73 4.9 15.7 1.0
CE1 B:PHE111 5.0 14.9 1.0

Reference:

J.E.Knapp, M.A.Bonham, Q.H.Gibson, J.C.Nichols, W.E.Royer Jr.. Residue F4 Plays A Key Role in Modulating Oxygen Affinity and Cooperativity in Scapharca Dimeric Hemoglobin Biochemistry V. 44 14419 2005.
ISSN: ISSN 0006-2960
PubMed: 16262242
DOI: 10.1021/BI051052+
Page generated: Sat Aug 3 19:26:05 2024

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