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Iron in PDB 3vtn: The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad

Protein crystallography data

The structure of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad, PDB code: 3vtn was solved by K.Harada, E.Yamashita, A.Nakagawa, S.Takeda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.06 / 1.75
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 47.171, 47.171, 72.114, 90.00, 90.00, 120.00
R / Rfree (%) 27.3 / 30.4

Other elements in 3vtn:

The structure of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad also contains other interesting chemical elements:

Platinum (Pt) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad (pdb code 3vtn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad, PDB code: 3vtn:

Iron binding site 1 out of 1 in 3vtn

Go back to Iron Binding Sites List in 3vtn
Iron binding site 1 out of 1 in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike - Pt Derivative For Mad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:25.0
occ:0.33
NE2 A:HIS183 2.0 57.8 1.0
CD2 A:HIS183 2.8 57.8 1.0
CE1 A:HIS183 2.9 57.8 1.0
CG A:HIS183 3.8 57.2 1.0
ND1 A:HIS183 3.8 57.5 1.0
O A:HIS183 4.5 57.3 1.0

Reference:

K.Harada, E.Yamashita, A.Nakagawa, T.Miyafusa, K.Tsumoto, T.Ueno, Y.Toyama, S.Takeda. Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike and Functions of Bound Calcium Ion Biochim.Biophys.Acta V.1834 284 2013.
ISSN: ISSN 0006-3002
PubMed: 22922659
DOI: 10.1016/J.BBAPAP.2012.08.015
Page generated: Sun Dec 13 15:25:19 2020

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