Iron in PDB 3vxj: Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol

All present enzymatic activity of Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol:
1.11.1.19;

The structure of Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol, PDB code: 3vxj was solved by Y.Sugano, T.Yoshida, H.Tsuge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.17 / 1.39
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.167, 96.344, 49.778, 90.00, 106.71, 90.00
R / Rfree (%)	18 / 19.5

The binding sites of Iron atom in the Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol (pdb code 3vxj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol, PDB code: 3vxj:

Iron binding site 1 out of 1 in the Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:7.0 occ:1.00 FE A:HEM501 0.0 7.0 1.0 O A:HOH863 2.0 13.2 1.0 NB A:HEM501 2.0 6.5 1.0 NC A:HEM501 2.0 5.6 1.0 NA A:HEM501 2.0 6.3 1.0 ND A:HEM501 2.0 6.2 1.0 NE2 A:HIS308 2.2 6.5 1.0 C4C A:HEM501 3.0 5.8 1.0 C4A A:HEM501 3.0 6.6 1.0 C1B A:HEM501 3.1 6.2 1.0 C1C A:HEM501 3.1 5.5 1.0 C1D A:HEM501 3.1 5.3 1.0 C4B A:HEM501 3.1 5.7 1.0 C1A A:HEM501 3.1 6.2 1.0 C4D A:HEM501 3.1 6.1 1.0 CE1 A:HIS308 3.1 6.4 1.0 CD2 A:HIS308 3.2 5.0 1.0 CHB A:HEM501 3.4 7.5 1.0 CHD A:HEM501 3.4 6.0 1.0 CHC A:HEM501 3.4 5.9 1.0 CHA A:HEM501 3.4 6.3 1.0 ND1 A:HIS308 4.2 7.7 1.0 C3A A:HEM501 4.3 6.5 1.0 C2C A:HEM501 4.3 6.2 1.0 C3C A:HEM501 4.3 6.5 1.0 C2B A:HEM501 4.3 6.4 1.0 NH1 A:ARG329 4.3 8.0 1.0 C2A A:HEM501 4.3 6.5 1.0 C3B A:HEM501 4.3 7.2 1.0 C2D A:HEM501 4.3 6.4 1.0 C3D A:HEM501 4.3 6.3 1.0 CG A:HIS308 4.3 6.1 1.0 O A:HOH862 4.4 4.6 1.0 CD A:ARG329 4.8 8.1 1.0 CE1 A:PHE356 4.8 9.5 1.0

Y.Sugano, T.Yoshida, H.Tsuge. Dye-Decolorizing Peroxidase (Dyp) Complex with 2,6-Dimethoxyphenol To Be Published.