Iron in PDB 3wc8: Dimeric Horse Cytochrome C Obtained By Refolding with Desalting Method

The structure of Dimeric Horse Cytochrome C Obtained By Refolding with Desalting Method, PDB code: 3wc8 was solved by P.P.Parui, M.S.Deshpande, S.Nagao, H.Kamikubo, H.Komori, Y.Higuchi, M.Kataoka, S.Hirota, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.54 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	60.815, 93.476, 36.241, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 20.8

The binding sites of Iron atom in the Dimeric Horse Cytochrome C Obtained By Refolding with Desalting Method (pdb code 3wc8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Dimeric Horse Cytochrome C Obtained By Refolding with Desalting Method, PDB code: 3wc8:

Iron binding site 1 out of 1 in the Dimeric Horse Cytochrome C Obtained By Refolding with Desalting Method


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dimeric Horse Cytochrome C Obtained By Refolding with Desalting Method within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:11.1 occ:1.00 FE A:HEM201 0.0 11.1 1.0 NE2 A:HIS18 1.9 12.3 1.0 NA A:HEM201 2.0 9.5 1.0 NC A:HEM201 2.0 11.5 1.0 NB A:HEM201 2.0 10.0 1.0 ND A:HEM201 2.0 11.2 1.0 O A:HOH301 2.1 14.7 1.0 CE1 A:HIS18 2.9 10.8 1.0 CD2 A:HIS18 3.0 9.9 1.0 C1B A:HEM201 3.0 11.5 1.0 C4C A:HEM201 3.0 9.8 1.0 C4A A:HEM201 3.0 12.9 1.0 C1A A:HEM201 3.0 11.8 1.0 C1C A:HEM201 3.0 9.7 1.0 C1D A:HEM201 3.1 13.5 1.0 C4D A:HEM201 3.1 12.4 1.0 C4B A:HEM201 3.1 8.5 1.0 CHD A:HEM201 3.4 12.5 1.0 CHB A:HEM201 3.4 9.4 1.0 CHC A:HEM201 3.4 9.2 1.0 CHA A:HEM201 3.4 8.3 1.0 ND1 A:HIS18 4.0 12.7 1.0 CG A:HIS18 4.1 10.3 1.0 C2B A:HEM201 4.2 10.0 1.0 C3A A:HEM201 4.3 12.7 1.0 C2A A:HEM201 4.3 10.8 1.0 O A:HOH329 4.3 24.5 1.0 C3B A:HEM201 4.3 10.2 1.0 C2C A:HEM201 4.3 10.1 1.0 C2D A:HEM201 4.3 11.8 1.0 C3C A:HEM201 4.3 9.6 1.0 C3D A:HEM201 4.3 9.6 1.0 OH A:TYR67 4.5 13.9 1.0 CE A:MET80 4.9 20.8 1.0

P.P.Parui, M.S.Deshpande, S.Nagao, H.Kamikubo, H.Komori, Y.Higuchi, M.Kataoka, S.Hirota. Formation of Oligomeric Cytochrome C During Folding By Intermolecular Hydrophobic Interaction Between N- and C-Terminal Alpha-Helices Biochemistry V. 52 8732 2013.
ISSN: ISSN 0006-2960
PubMed: 24206001
DOI: 10.1021/BI400986G