Iron »
PDB 3vtj-3wg7 »
3wcu »
Iron in PDB 3wcu: The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Protein crystallography data
The structure of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form, PDB code: 3wcu
was solved by
N.Numoto,
T.Nakagawa,
R.Ohara,
T.Hasegawa,
A.Kita,
T.Yoshida,
T.Maruyama,
K.Imai,
Y.Fukumori,
K.Miki,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 42.45 / 2.90 |
| Space group | P 63 |
| Cell size a, b, c (Å), α, β, γ (°) | 108.872, 108.872, 195.157, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 24.6 / 29.2 |
Other elements in 3wcu:
The structure of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form also contains other interesting chemical elements:
| Calcium | (Ca) | 2 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
(pdb code 3wcu). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form, PDB code: 3wcu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Iron where determined in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form, PDB code: 3wcu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Iron binding site 1 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 1 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 2 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 2 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 3 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 3 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 4 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 4 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 5 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 5 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 6 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 6 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 7 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 7 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Iron binding site 8 out of 8 in 3wcu
Go back to
Iron Binding Sites List in 3wcu
Iron binding site 8 out
of 8 in the The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Structure of A Deoxygenated 400 kDa Hemoglobin Provides A More Accurate Description of the Cooperative Mechanism of Giant Hemoglobins: Deoxygenated Form within 5.0Å range:
|
Reference:
N.Numoto,
T.Nakagawa,
R.Ohara,
T.Hasegawa,
A.Kita,
T.Yoshida,
T.Maruyama,
K.Imai,
Y.Fukumori,
K.Miki.
The Structure of A Deoxygenated 400 kDa Haemoglobin Reveals Ternary- and Quaternary-Structural Changes of Giant Haemoglobins Acta Crystallogr.,Sect.D V. 70 1823 2014.
ISSN: ISSN 0907-4449
PubMed: 25004960
DOI: 10.1107/S1399004714008475
Page generated: Sun Aug 4 22:35:18 2024
ISSN: ISSN 0907-4449
PubMed: 25004960
DOI: 10.1107/S1399004714008475
Last articles
Zn in 9JPJZn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
