Iron in PDB 4b7d: Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group

The structure of Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group, PDB code: 4b7d was solved by L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	93.37 / 1.89
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	36.766, 58.042, 96.415, 79.96, 79.52, 88.73
R / Rfree (%)	19.971 / 25.747

The binding sites of Iron atom in the Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group (pdb code 4b7d). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group, PDB code: 4b7d:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1407 b:20.1 occ:1.00 FE A:HEM1407 0.0 20.1 1.0 NB A:HEM1407 2.1 16.9 1.0 NA A:HEM1407 2.1 16.6 1.0 NC A:HEM1407 2.1 21.0 1.0 ND A:HEM1407 2.1 18.6 1.0 SG A:CYS354 2.3 18.5 1.0 C4B A:HEM1407 3.1 18.6 1.0 C4A A:HEM1407 3.1 14.1 1.0 C1B A:HEM1407 3.1 18.1 1.0 C1A A:HEM1407 3.1 15.7 1.0 C4C A:HEM1407 3.1 21.7 1.0 C1D A:HEM1407 3.1 20.5 1.0 C4D A:HEM1407 3.1 21.8 1.0 C1C A:HEM1407 3.1 20.1 1.0 CHA A:HEM1407 3.4 19.2 1.0 CHB A:HEM1407 3.4 13.1 1.0 CHC A:HEM1407 3.4 17.9 1.0 CHD A:HEM1407 3.4 17.6 1.0 CB A:CYS354 3.5 21.6 1.0 CA A:CYS354 4.0 22.6 1.0 C6 A:QLE1408 4.0 29.9 1.0 CB A:ALA243 4.2 33.2 1.0 C3B A:HEM1407 4.3 14.3 1.0 C2B A:HEM1407 4.3 17.5 1.0 C2A A:HEM1407 4.3 16.3 1.0 C3A A:HEM1407 4.3 15.7 1.0 C3C A:HEM1407 4.3 19.2 1.0 C2C A:HEM1407 4.4 19.2 1.0 C2D A:HEM1407 4.4 15.9 1.0 C3D A:HEM1407 4.4 19.6 1.0 N A:GLY356 4.6 18.2 1.0 C7 A:QLE1408 4.7 36.8 1.0 C A:CYS354 4.7 24.3 1.0 N A:ILE355 4.8 23.9 1.0

Iron binding site 2 out of 2 in the Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Pikc Bound to the 10-Dml Analog with the 3-(N,N-Dimethylamino) Propanoate Anchoring Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1407 b:18.3 occ:1.00 FE B:HEM1407 0.0 18.3 1.0 NC B:HEM1407 2.1 18.4 1.0 NA B:HEM1407 2.1 18.6 1.0 NB B:HEM1407 2.1 16.9 1.0 ND B:HEM1407 2.1 18.4 1.0 SG B:CYS354 2.2 18.8 1.0 C1C B:HEM1407 3.1 17.0 1.0 C4C B:HEM1407 3.1 16.1 1.0 C4B B:HEM1407 3.1 18.0 1.0 C4D B:HEM1407 3.1 20.5 1.0 C1D B:HEM1407 3.1 19.8 1.0 C1A B:HEM1407 3.1 15.5 1.0 C4A B:HEM1407 3.1 17.8 1.0 C1B B:HEM1407 3.1 17.7 1.0 CHC B:HEM1407 3.4 12.5 1.0 CHD B:HEM1407 3.4 15.2 1.0 CHA B:HEM1407 3.4 17.1 1.0 CHB B:HEM1407 3.4 11.6 1.0 CB B:CYS354 3.5 19.7 1.0 CA B:CYS354 4.0 20.5 1.0 C6 B:QLE1408 4.1 25.2 1.0 C3C B:HEM1407 4.3 19.3 1.0 CB B:ALA243 4.3 28.2 1.0 C2C B:HEM1407 4.3 19.0 1.0 C3B B:HEM1407 4.3 17.3 1.0 C2A B:HEM1407 4.3 12.8 1.0 C3A B:HEM1407 4.3 11.5 1.0 C3D B:HEM1407 4.3 17.6 1.0 C2D B:HEM1407 4.4 15.9 1.0 C2B B:HEM1407 4.4 18.4 1.0 C7 B:QLE1408 4.7 29.2 1.0 N B:GLY356 4.7 21.7 1.0 C B:CYS354 4.8 20.8 1.0 N B:ILE355 4.8 20.6 1.0

L.M.Podust, L.M.Podust. N/A N/A.